mRNA_M-pyrifera_M_contig70800.16902.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70800.16902.1
Unique NamemRNA_M-pyrifera_M_contig70800.16902.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70800.16902.1 vs. uniprot
Match: W7TVK2_9STRA (Microsomal signal peptidase 23 kd n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVK2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.830e-19
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   22 ADLSDLFDWNAKQVFVFVTAEYSGRDGVNATAVVWDEIVRRKEDAVFHLRNEPIAYPLVDTDDSIPLTSLPISLQLHWDVMPLAGGL 282
            ADLS  FDWN KQ+FVF+  EY  +  V +  VVWD I+ RKEDAV +L+ E + YPL   D ++ L +  I+L+L WD MPL G L
Sbjct:  102 ADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLNLKAEFLDYPL--RDPAVELRNKNITLRLVWDHMPLTGTL 186          
BLAST of mRNA_M-pyrifera_M_contig70800.16902.1 vs. uniprot
Match: A0A642UYY2_DIURU (Signal peptidase subunit 3 n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642UYY2_DIURU)

HSP 1 Score: 86.7 bits (213), Expect = 1.070e-18
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1
Query:   22 ADLSDLFDWNAKQVFVFVTAEYSGRDGVNATAVVWDEIVRRKEDAVFHLRNEPIAYPLVDTDDSIPLTSLPISLQLHWDVMPLAGGLSLGAKSTLPASEFRAPKE 336
            +DL+ LF+WN KQVF+++TA Y+  DG  +    WD+I+R KEDA   L+N    Y + D  DS   T  P  ++L W++ P  G L  G  +T    EF  PK+
Sbjct:   81 SDLTPLFNWNTKQVFIYLTASYNSTDGGESKVTYWDKILRTKEDATLKLKNAKSKYSVWDVQDSFDGT--PAVVKLEWNIQPWIGPLIYGETTTTATFEFAQPKD 183          
BLAST of mRNA_M-pyrifera_M_contig70800.16902.1 vs. uniprot
Match: A0A4D9CWF7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWF7_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.870e-18
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   22 ADLSDLFDWNAKQVFVFVTAEYSGRDGVNATAVVWDEIVRRKEDAVFHLRNEPIAYPLVDTDDSIPLTSLPISLQLHWDVMPLAGGL 282
            ADLS  FDWN KQ+FVF+  EY  +  V +  VVWD I+ RKEDAV  L  E + YPL   D ++ L +  I+L+L WD MPL G L
Sbjct:  113 ADLSPAFDWNIKQLFVFLVVEYESKKNVLSQVVVWDRIIERKEDAVLDLEAEFLDYPL--RDPAVELRNKNITLRLVWDHMPLTGTL 197          
BLAST of mRNA_M-pyrifera_M_contig70800.16902.1 vs. uniprot
Match: C4Y215_CLAL4 (Signal peptidase subunit 3 n=2 Tax=Clavispora lusitaniae TaxID=36911 RepID=C4Y215_CLAL4)

HSP 1 Score: 83.2 bits (204), Expect = 1.310e-17
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    7 VFCCVADLSDLFDWNAKQVFVFVTAEYSGRDGVNATAVV-WDEIVRRKEDAVFHLRNEPIAYPLVDTDDSIPLTSLPISLQLHWDVMPLAGGLSLGAKSTLPASEFRAPKE 336
            VF   ADL+ LF+WN KQVF+++TAEY G+   ++  V  WD+I+   EDAV HLRN+   Y + D + S    S   +L+L W++ P  G L  G   T    +F + K+
Sbjct:   76 VFDLDADLTPLFNWNTKQVFIYLTAEYDGKTPESSNKVTYWDKIITSPEDAVLHLRNQKSKYSVWDVEKSF--RSRNATLKLEWNIQPWVGPLLFGETETASTFQFASSKK 184          
BLAST of mRNA_M-pyrifera_M_contig70800.16902.1 vs. uniprot
Match: A0A512UD52_9ASCO (Signal peptidase subunit 3 n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512UD52_9ASCO)

HSP 1 Score: 83.2 bits (204), Expect = 1.340e-17
Identity = 42/109 (38.53%), Postives = 61/109 (55.96%), Query Frame = 1
Query:   10 FCCVADLSDLFDWNAKQVFVFVTAEYSGRDGVNATAVVWDEIVRRKEDAVFHLRNEPIAYPLVDTDDSIPLTSLPISLQLHWDVMPLAGGLSLGAKSTLPASEFRAPKE 336
            F   ADL+ LF+WN KQVFV++TAEY G++G +     WD+I+  K+ AVF L+N    Y + D + S      P +L L W++ P  G L  G   T+   +F   K+
Sbjct:   77 FDLAADLTPLFNWNTKQVFVYLTAEYEGKNGGSNKVTFWDKIITSKDGAVFDLKNARSKYSVWDLEKSF--RERPANLTLEWNLQPWVGPLIFGKTETVSTFQFAGTKK 183          
BLAST of mRNA_M-pyrifera_M_contig70800.16902.1 vs. uniprot
Match: A0A8H7PJF0_MORIS (Signal peptidase subunit 3 n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PJF0_MORIS)

HSP 1 Score: 81.3 bits (199), Expect = 6.820e-17
Identity = 42/97 (43.30%), Postives = 52/97 (53.61%), Query Frame = 1
Query:   22 ADLSDLFDWNAKQVFVFVTAEYSGRDGVNATAVVWDEIVRRKEDAVFHLRNEPIAYPLVDTDDSIPLTSLPISLQLHWDVMPLAGGLSLGAKSTLPA 312
            ADLSDLF+WN KQ+FV V AEY  +       V+WD+I+R KE A   LRN P  Y L+D             L LHWDV P  G   +G+ +   A
Sbjct:   78 ADLSDLFNWNTKQLFVSVVAEYETKTHNKNQVVIWDKIIRNKESAKISLRNVPNKYALIDFSQK--WRKQQAKLSLHWDVTPWVGTFQMGSSNASTA 172          
BLAST of mRNA_M-pyrifera_M_contig70800.16902.1 vs. uniprot
Match: A0A286U691_9AGAM (Signal peptidase subunit 3 n=1 Tax=Pyrrhoderma noxium TaxID=2282107 RepID=A0A286U691_9AGAM)

HSP 1 Score: 80.5 bits (197), Expect = 1.190e-16
Identity = 44/97 (45.36%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 FAVFCCVADLSDLFDWNAKQVFVFVTAEYSGRDGVNATAVVWDEIVRRKEDAVFHLRNEPIAYPLVDTDDSIPLTSLPISLQLHWDVMPLAGGLSLG 291
            FA F   ADL+ LF+WN KQ+FV+V AEY+  DG     V+WD IVRRKEDA   + N    YPL D   +    S P +  L +++MP  G L+ G
Sbjct:   65 FARFNVSADLTSLFNWNTKQLFVYVQAEYTSADGTQNEIVIWDRIVRRKEDAFIKVSNGRPKYPLRDMARTFKNAS-PANYTLKYNLMPHVGVLTYG 160          
BLAST of mRNA_M-pyrifera_M_contig70800.16902.1 vs. uniprot
Match: A0A0J9X9T1_GEOCN (Signal peptidase subunit 3 n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X9T1_GEOCN)

HSP 1 Score: 80.5 bits (197), Expect = 1.440e-16
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1
Query:   22 ADLSDLFDWNAKQVFVFVTAEYSG---RDGVNATAVVWDEIVRRKEDAVFHLRNEPIAYPLVDTDDSIPLTSLPISLQLHWDVMPLAGGLSLGAKSTL--PASEF 321
            ADL+ LF+WN KQVFV++TAEY G   R  ++     WD+I+  KEDA+ HLRN+  AY + D   S    +   +L+L W++ P  G L  G    +  P  +F
Sbjct:   80 ADLTPLFNWNTKQVFVYLTAEYDGGAKRTDISNKVTFWDKIILTKEDAILHLRNQRSAYSVYDVQKSFNENNA--TLKLGWNIQPWVGALIFGESEVVGEPTLQF 182          
BLAST of mRNA_M-pyrifera_M_contig70800.16902.1 vs. uniprot
Match: W6MIN4_9ASCO (Signal peptidase subunit 3 n=1 Tax=Kuraishia capsulata CBS 1993 TaxID=1382522 RepID=W6MIN4_9ASCO)

HSP 1 Score: 80.1 bits (196), Expect = 2.070e-16
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   10 FCCVADLSDLFDWNAKQVFVFVTAEYSGRDGVNATAVV-WDEIVRRKEDAVFHLRNEPIAYPLVDTDDSIPLTSLPISLQLHWDVMPLAGGLSLG 291
            F   AD+SDLF+WN KQVFV++TAEY G+  + A  V  W++I+ +KEDAV +L+ E  ++ + D +DS    +   SL+L W++ P  G L  G
Sbjct:   76 FDLTADISDLFNWNTKQVFVYLTAEYEGQPSIPANKVTFWNKIITKKEDAVLNLQKERSSFSVWDVEDSFRQRNA--SLKLEWNIQPHVGLLLWG 168          
BLAST of mRNA_M-pyrifera_M_contig70800.16902.1 vs. uniprot
Match: A0A4P6XPL8_9ASCO (Signal peptidase subunit 3 n=1 Tax=Metschnikowia aff. pulcherrima TaxID=2163413 RepID=A0A4P6XPL8_9ASCO)

HSP 1 Score: 80.1 bits (196), Expect = 2.300e-16
Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = 1
Query:   10 FCCVADLSDLFDWNAKQVFVFVTAEYSGRDGVNATAVVWDEIVRRKEDAVFHLRNEPIAYPLVDTDDSIPLTSLPISLQLHWDVMPLAGGLSLGAKSTLPASEF 321
            F   ADL+ LF+WN KQVFV++TAEY G +        WD+I+  K+DAVF L+N    Y + D + S      P  L+L W+V P  G L  G      A +F
Sbjct:   77 FDLAADLTPLFNWNTKQVFVYLTAEYDGANTAMNKVTFWDKIITSKDDAVFDLKNVRSKYSVWDVESSF--RERPAKLKLEWNVQPWVGPLVFGETDAESAFKF 178          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70800.16902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TVK2_9STRA5.830e-1950.57Microsomal signal peptidase 23 kd n=1 Tax=Nannochl... [more]
A0A642UYY2_DIURU1.070e-1840.00Signal peptidase subunit 3 n=1 Tax=Diutina rugosa ... [more]
A0A4D9CWF7_9STRA2.870e-1850.57Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
C4Y215_CLAL41.310e-1739.64Signal peptidase subunit 3 n=2 Tax=Clavispora lusi... [more]
A0A512UD52_9ASCO1.340e-1738.53Signal peptidase subunit 3 n=1 Tax=Metschnikowia s... [more]
A0A8H7PJF0_MORIS6.820e-1743.30Signal peptidase subunit 3 n=1 Tax=Mortierella isa... [more]
A0A286U691_9AGAM1.190e-1645.36Signal peptidase subunit 3 n=1 Tax=Pyrrhoderma nox... [more]
A0A0J9X9T1_GEOCN1.440e-1640.00Signal peptidase subunit 3 n=1 Tax=Geotrichum cand... [more]
W6MIN4_9ASCO2.070e-1643.16Signal peptidase subunit 3 n=1 Tax=Kuraishia capsu... [more]
A0A4P6XPL8_9ASCO2.300e-1640.38Signal peptidase subunit 3 n=1 Tax=Metschnikowia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70800contigM-pyrifera_M_contig70800:70..405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score82.4
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog160860.XP_007336811.1
Preferred nameSPC3
KEGG koko:K12948
KEGG Pathwayko03060,map03060
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0016787,GO:0019538,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1902494,GO:1905368
EggNOG free text desc.Signal peptidase
EggNOG OGs2293Y@155619,39AIP@33154,3H4UA@355688,3NYT4@4751,3V1UT@5204,KOG3372@1,KOG3372@2759
COG Functional cat.U
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.8942256-CDS-M-pyrifera_M_contig70800:69..4051622816601.8942256-CDS-M-pyrifera_M_contig70800:69..405Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70800 70..405 +
1692278071.0846543-CDS-M-pyrifera_M_contig70800:69..4051692278071.0846543-CDS-M-pyrifera_M_contig70800:69..405Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70800 70..405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70800.16902.1prot_M-pyrifera_M_contig70800.16902.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70800 70..405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70800.16902.1

>prot_M-pyrifera_M_contig70800.16902.1 ID=prot_M-pyrifera_M_contig70800.16902.1|Name=mRNA_M-pyrifera_M_contig70800.16902.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
FAVFCCVADLSDLFDWNAKQVFVFVTAEYSGRDGVNATAVVWDEIVRRKE
DAVFHLRNEPIAYPLVDTDDSIPLTSLPISLQLHWDVMPLAGGLSLGAKS
TLPASEFRAPKE
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mRNA from alignment at M-pyrifera_M_contig70800:70..405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70800.16902.1 ID=mRNA_M-pyrifera_M_contig70800.16902.1|Name=mRNA_M-pyrifera_M_contig70800.16902.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig70800:70..405+ (Macrocystis pyrifera P11B4 male)
TTTGCTGTTTTCTGTTGTGTTGCAGACTTGAGCGACCTGTTCGATTGGAA TGCGAAGCAGGTATTTGTGTTTGTGACAGCGGAGTATAGTGGTCGGGATG GAGTGAACGCAACTGCAGTGGTTTGGGATGAGATTGTGCGTCGCAAGGAA GATGCAGTGTTTCATCTGCGGAACGAGCCGATCGCGTACCCCTTGGTGGA TACGGACGACTCCATCCCGTTGACTTCTCTGCCCATCTCCCTCCAACTGC ACTGGGATGTCATGCCTCTCGCCGGAGGTCTTTCCCTAGGAGCCAAATCC ACCCTCCCAGCCTCTGAATTCAGAGCCCCAAAGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70800:70..405+

>mRNA_M-pyrifera_M_contig70800.16902.1 ID=mRNA_M-pyrifera_M_contig70800.16902.1|Name=mRNA_M-pyrifera_M_contig70800.16902.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig70800:70..405+ (Macrocystis pyrifera P11B4 male)
TTTGCTGTTTTCTGTTGTGTTGCAGACTTGAGCGACCTGTTCGATTGGAA
TGCGAAGCAGGTATTTGTGTTTGTGACAGCGGAGTATAGTGGTCGGGATG
GAGTGAACGCAACTGCAGTGGTTTGGGATGAGATTGTGCGTCGCAAGGAA
GATGCAGTGTTTCATCTGCGGAACGAGCCGATCGCGTACCCCTTGGTGGA
TACGGACGACTCCATCCCGTTGACTTCTCTGCCCATCTCCCTCCAACTGC
ACTGGGATGTCATGCCTCTCGCCGGAGGTCTTTCCCTAGGAGCCAAATCC
ACCCTCCCAGCCTCTGAATTCAGAGCCCCAAAGGAATTTGCTGTTTTCTG
TTGTGTTGCAGACTTGAGCGACCTGTTCGATTGGAATGCGAAGCAGGTAT
TTGTGTTTGTGACAGCGGAGTATAGTGGTCGGGATGGAGTGAACGCAACT
GCAGTGGTTTGGGATGAGATTGTGCGTCGCAAGGAAGATGCAGTGTTTCA
TCTGCGGAACGAGCCGATCGCGTACCCCTTGGTGGATACGGACGACTCCA
TCCCGTTGACTTCTCTGCCCATCTCCCTCCAACTGCACTGGGATGTCATG
CCTCTCGCCGGAGGTCTTTCCCTAGGAGCCAAATCCACCCTCCCAGCCTC
TGAATTCAGAGCCCCAAAGGAA
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