mRNA_M-pyrifera_M_contig7080.16901.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7080.16901.1
Unique NamemRNA_M-pyrifera_M_contig7080.16901.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7080.16901.1 vs. uniprot
Match: A0A6H5L6L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6L5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 7.370e-8
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 FLRNSSVARASFLGYLLLLHLWAFAVLGFHHSNME 105
            FLRNSSVARA+FL YLLLLHLW FAV+G H S + 
Sbjct:  900 FLRNSSVARAAFLAYLLLLHLWTFAVVGLHSSTLN 934
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BLAST of mRNA_M-pyrifera_M_contig7080.16901.1 vs. uniprot
Match: D8LSA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSA0_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 4.320e-6
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 FLRNSSVARASFLGYLLLLHLWAFAVLGFHHSNME 105
            FLRNSSVARA+FL YLLLLHL AFA++G H S + 
Sbjct:  861 FLRNSSVARAAFLAYLLLLHLSAFALVGLHSSTLN 895
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BLAST of mRNA_M-pyrifera_M_contig7080.16901.1 vs. uniprot
Match: A0A024UK16_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UK16_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 3.890e-5
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 FLRNSSVARASFLGYLLLLHLWAFAVLGFHHSNMEQPI 114
            FLR    AR + LGYL+LLHLWAF +LGFH S++ + +
Sbjct:  546 FLRAYPEARLALLGYLVLLHLWAFVILGFHTSHLNEEV 583
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BLAST of mRNA_M-pyrifera_M_contig7080.16901.1 vs. uniprot
Match: A0A397D1J3_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D1J3_9STRA)

HSP 1 Score: 46.6 bits (109), Expect = 9.950e-5
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:    1 FLRNSSVARASFLGYLLLLHLWAFAVLGFHHSNMEQPI 114
            FLR    AR   LGYL+LLHLWAF +LGFH S++   +
Sbjct:  758 FLRAYPEARLGLLGYLVLLHLWAFVILGFHTSHLSDEV 795
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BLAST of mRNA_M-pyrifera_M_contig7080.16901.1 vs. uniprot
Match: W4H6P5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H6P5_9STRA)

HSP 1 Score: 46.6 bits (109), Expect = 9.980e-5
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:    1 FLRNSSVARASFLGYLLLLHLWAFAVLGFHHSNMEQPI 114
            FLR    AR   LGYL+LLHLWAF +LGFH S++   +
Sbjct:  519 FLRAYPEARLGLLGYLVLLHLWAFVILGFHTSHLSDEV 556
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7080.16901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L6L5_9PHAE7.370e-874.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSA0_ECTSI4.320e-671.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A024UK16_9STRA3.890e-555.26Uncharacterized protein n=4 Tax=Aphanomyces invada... [more]
A0A397D1J3_9STRA9.950e-555.26Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
W4H6P5_9STRA9.980e-555.26Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7080contigM-pyrifera_M_contig7080:332..445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004300.2
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.863316-CDS-M-pyrifera_M_contig7080:331..4451622816601.863316-CDS-M-pyrifera_M_contig7080:331..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7080 332..445 -
1692278071.0703425-CDS-M-pyrifera_M_contig7080:331..4451692278071.0703425-CDS-M-pyrifera_M_contig7080:331..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7080 332..445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7080.16901.1prot_M-pyrifera_M_contig7080.16901.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7080 332..445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7080.16901.1

>prot_M-pyrifera_M_contig7080.16901.1 ID=prot_M-pyrifera_M_contig7080.16901.1|Name=mRNA_M-pyrifera_M_contig7080.16901.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
FLRNSSVARASFLGYLLLLHLWAFAVLGFHHSNMEQPI
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mRNA from alignment at M-pyrifera_M_contig7080:332..445-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7080.16901.1 ID=mRNA_M-pyrifera_M_contig7080.16901.1|Name=mRNA_M-pyrifera_M_contig7080.16901.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=114bp|location=Sequence derived from alignment at M-pyrifera_M_contig7080:332..445- (Macrocystis pyrifera P11B4 male)
TTTCTCCGCAACTCTTCCGTGGCCCGCGCGTCATTCCTGGGGTACCTGCT
GCTTCTTCACCTCTGGGCGTTCGCCGTCCTAGGCTTCCACCACTCCAACA
TGGAGCAACCTATA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7080:332..445-

>mRNA_M-pyrifera_M_contig7080.16901.1 ID=mRNA_M-pyrifera_M_contig7080.16901.1|Name=mRNA_M-pyrifera_M_contig7080.16901.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig7080:332..445- (Macrocystis pyrifera P11B4 male)
TTTCTCCGCAACTCTTCCGTGGCCCGCGCGTCATTCCTGGGGTACCTGCT
GCTTCTTCACCTCTGGGCGTTCGCCGTCCTAGGCTTCCACCACTCCAACA
TGGAGCAACCTATATTTCTCCGCAACTCTTCCGTGGCCCGCGCGTCATTC
CTGGGGTACCTGCTGCTTCTTCACCTCTGGGCGTTCGCCGTCCTAGGCTT
CCACCACTCCAACATGGAGCAACCTATA
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