mRNA_M-pyrifera_M_contig70753.16888.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70753.16888.1
Unique NamemRNA_M-pyrifera_M_contig70753.16888.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70753.16888.1 vs. uniprot
Match: D7G453_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G453_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 5.020e-19
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 RHLSFCPTEDPVRGRDTLPWRMMIESGRECGTVPEVL 111
            RHL FCPTEDP+RGRDTLPWRMMIESGRECGT+PEV+
Sbjct:  140 RHLGFCPTEDPIRGRDTLPWRMMIESGRECGTIPEVM 176
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70753.16888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G453_ECTSI5.020e-1989.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70753contigM-pyrifera_M_contig70753:936..1046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_002210.1
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.096771-CDS-M-pyrifera_M_contig70753:935..10461622816601.096771-CDS-M-pyrifera_M_contig70753:935..1046Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70753 936..1046 -
1692278070.67714-CDS-M-pyrifera_M_contig70753:935..10461692278070.67714-CDS-M-pyrifera_M_contig70753:935..1046Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70753 936..1046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70753.16888.1prot_M-pyrifera_M_contig70753.16888.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70753 936..1046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70753.16888.1

>prot_M-pyrifera_M_contig70753.16888.1 ID=prot_M-pyrifera_M_contig70753.16888.1|Name=mRNA_M-pyrifera_M_contig70753.16888.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=37bp
RHLSFCPTEDPVRGRDTLPWRMMIESGRECGTVPEVL
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mRNA from alignment at M-pyrifera_M_contig70753:936..1046-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70753.16888.1 ID=mRNA_M-pyrifera_M_contig70753.16888.1|Name=mRNA_M-pyrifera_M_contig70753.16888.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=111bp|location=Sequence derived from alignment at M-pyrifera_M_contig70753:936..1046- (Macrocystis pyrifera P11B4 male)
AGACACCTGTCCTTCTGCCCGACTGAGGACCCAGTCCGAGGCAGGGACAC
GCTTCCCTGGAGGATGATGATCGAGTCCGGCAGGGAGTGTGGCACCGTCC
CCGAGGTATTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70753:936..1046-

>mRNA_M-pyrifera_M_contig70753.16888.1 ID=mRNA_M-pyrifera_M_contig70753.16888.1|Name=mRNA_M-pyrifera_M_contig70753.16888.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig70753:936..1046- (Macrocystis pyrifera P11B4 male)
AGACACCTGTCCTTCTGCCCGACTGAGGACCCAGTCCGAGGCAGGGACAC
GCTTCCCTGGAGGATGATGATCGAGTCCGGCAGGGAGTGTGGCACCGTCC
CCGAGGTATTGAGACACCTGTCCTTCTGCCCGACTGAGGACCCAGTCCGA
GGCAGGGACACGCTTCCCTGGAGGATGATGATCGAGTCCGGCAGGGAGTG
TGGCACCGTCCCCGAGGTATTG
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