mRNA_M-pyrifera_M_contig70680.16872.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70680.16872.1
Unique NamemRNA_M-pyrifera_M_contig70680.16872.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70680.16872.1 vs. uniprot
Match: D7FT58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT58_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 5.140e-10
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 LSSFLEAEKTVRRSRFLTKLSATLRTRAHLVLPAMANFWRVDF--SSKALCEDVERSR 168
            L  FLEAEKT RR R L +L+  LRTR HLVLPA+ANFWRVD   SSK + E V+ ++
Sbjct:   57 LCKFLEAEKTRRRHRVLGELATVLRTRTHLVLPAIANFWRVDLYQSSKGMEERVDAAK 114
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BLAST of mRNA_M-pyrifera_M_contig70680.16872.1 vs. uniprot
Match: A0A6H5KR02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR02_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 6.320e-9
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 LSSFLEAEKTVRRSRFLTKLSATLRTRAHLVLPAMANFWRVDF--SSKALCEDVERSR 168
            L  FLEAEKT RR R L +L+  LRT  HLVLPA+ANFWRVD   SSK + E V+ ++
Sbjct:  378 LCKFLEAEKTRRRHRVLGELATVLRTWTHLVLPAIANFWRVDLYQSSKGMEERVDAAK 435
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70680.16872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT58_ECTSI5.140e-1060.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR02_9PHAE6.320e-958.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70680contigM-pyrifera_M_contig70680:232..411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816600.2550297-CDS-M-pyrifera_M_contig70680:231..4111622816600.2550297-CDS-M-pyrifera_M_contig70680:231..411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70680 232..411 +
1692278070.2403333-CDS-M-pyrifera_M_contig70680:231..4111692278070.2403333-CDS-M-pyrifera_M_contig70680:231..411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70680 232..411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70680.16872.1prot_M-pyrifera_M_contig70680.16872.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70680 232..411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70680.16872.1

>prot_M-pyrifera_M_contig70680.16872.1 ID=prot_M-pyrifera_M_contig70680.16872.1|Name=mRNA_M-pyrifera_M_contig70680.16872.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
LSSFLEAEKTVRRSRFLTKLSATLRTRAHLVLPAMANFWRVDFSSKALCE
DVERSRVRA*
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mRNA from alignment at M-pyrifera_M_contig70680:232..411+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70680.16872.1 ID=mRNA_M-pyrifera_M_contig70680.16872.1|Name=mRNA_M-pyrifera_M_contig70680.16872.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig70680:232..411+ (Macrocystis pyrifera P11B4 male)
CTCTCTAGCTTTTTGGAGGCCGAGAAGACTGTCAGGAGGAGCCGGTTCCT
GACGAAGCTGAGCGCGACGCTGCGCACCAGGGCGCATCTGGTCCTTCCCG
CCATGGCGAACTTCTGGCGCGTGGATTTCAGCAGCAAGGCGCTTTGTGAG
GACGTTGAGCGGAGCAGGGTGAGGGCTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70680:232..411+

>mRNA_M-pyrifera_M_contig70680.16872.1 ID=mRNA_M-pyrifera_M_contig70680.16872.1|Name=mRNA_M-pyrifera_M_contig70680.16872.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig70680:232..411+ (Macrocystis pyrifera P11B4 male)
CTCTCTAGCTTTTTGGAGGCCGAGAAGACTGTCAGGAGGAGCCGGTTCCT
GACGAAGCTGAGCGCGACGCTGCGCACCAGGGCGCATCTGGTCCTTCCCG
CCATGGCGAACTTCTGGCGCGTGGATTTCAGCAGCAAGGCGCTTTGTGAG
GACGTTGAGCGGAGCAGGGTGAGGGCTTAGCTCTCTAGCTTTTTGGAGGC
CGAGAAGACTGTCAGGAGGAGCCGGTTCCTGACGAAGCTGAGCGCGACGC
TGCGCACCAGGGCGCATCTGGTCCTTCCCGCCATGGCGAACTTCTGGCGC
GTGGATTTCAGCAGCAAGGCGCTTTGTGAGGACGTTGAGCGGAGCAGGGT
GAGGGCTTAG
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