mRNA_M-pyrifera_M_contig70615.16852.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70615.16852.1
Unique NamemRNA_M-pyrifera_M_contig70615.16852.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70615.16852.1 vs. uniprot
Match: A0A7S4MAP8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MAP8_9EUKA)

HSP 1 Score: 160 bits (404), Expect = 6.020e-49
Identity = 72/102 (70.59%), Postives = 87/102 (85.29%), Query Frame = 1
Query:   19 IKRSDFKNFKEFFPYYLEEHSNRTNRRLHVIGTLSAGLMLLYLLLTAQYRLLFLPFVIGYGFAWVGHFFFEKNKPATFKHPFYSFRGDWHMLYMVLSGRIPF 324
            + R+D+K FK+F+PYYLEEHSN+TNRRLHVIGTLSA L L+ +L T Q RLL++P +IGYGFAWVGHFFFEKNKPATFK+P +S RGDW ML  VL+G+I F
Sbjct:    5 VTRTDYKTFKDFYPYYLEEHSNQTNRRLHVIGTLSATLSLILILFTMQLRLLWVPLLIGYGFAWVGHFFFEKNKPATFKYPLFSLRGDWKMLAQVLTGKIAF 106          
BLAST of mRNA_M-pyrifera_M_contig70615.16852.1 vs. uniprot
Match: A0A432WKL3_9GAMM (DUF962 domain-containing protein n=1 Tax=Aliidiomarina sanyensis TaxID=1249555 RepID=A0A432WKL3_9GAMM)

HSP 1 Score: 141 bits (355), Expect = 1.510e-41
Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = 1
Query:   31 DFKNFKEFFPYYLEEHSNRTNRRLHVIGTLSAGLMLLYLLLTAQYRLLFLPFVIGYGFAWVGHFFFEKNKPATFKHPFYSFRGDWHMLYMVLSGRIP 321
            +FK+FKEF+PYYL+EH NRT+RRLHVIG+L    +LLY L++  Y  L    V+GYGFAWVGHFFFEKNKPATFKHP YS  GDW ML  V++GRIP
Sbjct:    4 EFKSFKEFYPYYLQEHKNRTSRRLHVIGSLLVIAILLYALISGAYLWLLAIPVVGYGFAWVGHFFFEKNKPATFKHPLYSLMGDWVMLKDVMTGRIP 100          
BLAST of mRNA_M-pyrifera_M_contig70615.16852.1 vs. uniprot
Match: A0A552WZZ4_9GAMM (DUF962 domain-containing protein n=1 Tax=Aliidiomarina halalkaliphila TaxID=2593535 RepID=A0A552WZZ4_9GAMM)

HSP 1 Score: 139 bits (350), Expect = 9.880e-41
Identity = 63/99 (63.64%), Postives = 78/99 (78.79%), Query Frame = 1
Query:   25 RSDFKNFKEFFPYYLEEHSNRTNRRLHVIGTLSAGLMLLYLLLTAQYRLLFLPFVIGYGFAWVGHFFFEKNKPATFKHPFYSFRGDWHMLYMVLSGRIP 321
            + +F +FKEF+PYYL+EH NRT+RRLHV+GTL    ++LY+L T  +  L+   V+GYGFAWVGHFFFEKNKPATFKHP YS  GDW ML  VL+GR+P
Sbjct:    6 QKEFNSFKEFYPYYLKEHRNRTSRRLHVVGTLLVVAIVLYVLFTGAWVWLWAVPVVGYGFAWVGHFFFEKNKPATFKHPLYSLMGDWVMLKDVLTGRLP 104          
BLAST of mRNA_M-pyrifera_M_contig70615.16852.1 vs. uniprot
Match: L8H8K0_ACACA (Membrane proteinlike, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8K0_ACACA)

HSP 1 Score: 139 bits (349), Expect = 1.840e-40
Identity = 65/106 (61.32%), Postives = 78/106 (73.58%), Query Frame = 1
Query:   10 KAVIKRS-DFKNFKEFFPYYLEEHSNRTNRRLHVIGTLSAGLMLLYLLLTAQYRLLFLPFVIGYGFAWVGHFFFEKNKPATFKHPFYSFRGDWHMLYMVLSGRIPF 324
            K VI    +F +F+EFFP+Y++EHSNRTNRRLH IGT  A L L  L     Y+ LF PFV+GYGFAWVGHFF EKNKPATFKHPFYS  GD+ M Y +++G+  F
Sbjct:    9 KGVISSGKEFNSFEEFFPFYMQEHSNRTNRRLHFIGTSLALLSLAILTFLGLYKFLFAPFVLGYGFAWVGHFFIEKNKPATFKHPFYSLMGDFQMWYNIITGKQKF 114          
BLAST of mRNA_M-pyrifera_M_contig70615.16852.1 vs. uniprot
Match: F4Q9P3_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q9P3_CAVFA)

HSP 1 Score: 137 bits (346), Expect = 3.900e-40
Identity = 61/97 (62.89%), Postives = 78/97 (80.41%), Query Frame = 1
Query:   34 FKNFKEFFPYYLEEHSNRTNRRLHVIGTLSAGLMLLYLLLTAQYRLLFLPFVIGYGFAWVGHFFFEKNKPATFKHPFYSFRGDWHMLYMVLSGRIPF 324
            +K+F+EF+P+YL+EHSNRTNRRLH IGT    L L+Y +LT QY +L +PFV GYGFAWVGHFFF+KN+PATFK+P  S RGD+ +   +LSG+I F
Sbjct:    8 YKSFEEFYPFYLKEHSNRTNRRLHFIGTSLGVLFLIYFILTKQYSMLLVPFVFGYGFAWVGHFFFQKNRPATFKYPGMSLRGDFTLWSQILSGKIKF 104          
BLAST of mRNA_M-pyrifera_M_contig70615.16852.1 vs. uniprot
Match: UPI00188E75F5 (DUF962 domain-containing protein n=1 Tax=Aliidiomarina indica TaxID=2749147 RepID=UPI00188E75F5)

HSP 1 Score: 137 bits (346), Expect = 4.020e-40
Identity = 61/97 (62.89%), Postives = 78/97 (80.41%), Query Frame = 1
Query:   31 DFKNFKEFFPYYLEEHSNRTNRRLHVIGTLSAGLMLLYLLLTAQYRLLFLPFVIGYGFAWVGHFFFEKNKPATFKHPFYSFRGDWHMLYMVLSGRIP 321
            +F +F+EF+PYYL+EH NRT+RRLHV+GTL    +++Y +L++ Y  L+   V+GYGFAWVGHFFFEKNKPATFKHP YS  GDW ML  VL+GR+P
Sbjct:    8 EFNSFREFYPYYLKEHRNRTSRRLHVVGTLLVVAIIVYAILSSAYVWLWAVPVVGYGFAWVGHFFFEKNKPATFKHPIYSLMGDWVMLKDVLTGRLP 104          
BLAST of mRNA_M-pyrifera_M_contig70615.16852.1 vs. uniprot
Match: Q86IC0_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q86IC0_DICDI)

HSP 1 Score: 137 bits (345), Expect = 5.530e-40
Identity = 62/97 (63.92%), Postives = 73/97 (75.26%), Query Frame = 1
Query:   34 FKNFKEFFPYYLEEHSNRTNRRLHVIGTLSAGLMLLYLLLTAQYRLLFLPFVIGYGFAWVGHFFFEKNKPATFKHPFYSFRGDWHMLYMVLSGRIPF 324
            + NFKEF+PYYL+EH+NRTNRRLH +GT    L ++Y LLT QYR L L  V GY FAW GHFF EKNKPATFK+P +SFRGD  M   +LSG+I F
Sbjct:    8 YNNFKEFYPYYLKEHTNRTNRRLHFVGTTLGFLTIVYALLTGQYRYLLLALVFGYSFAWAGHFFIEKNKPATFKYPIWSFRGDMKMYSSILSGKIKF 104          
BLAST of mRNA_M-pyrifera_M_contig70615.16852.1 vs. uniprot
Match: UPI0006450193 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450193)

HSP 1 Score: 136 bits (343), Expect = 1.120e-39
Identity = 58/97 (59.79%), Postives = 80/97 (82.47%), Query Frame = 1
Query:   34 FKNFKEFFPYYLEEHSNRTNRRLHVIGTLSAGLMLLYLLLTAQYRLLFLPFVIGYGFAWVGHFFFEKNKPATFKHPFYSFRGDWHMLYMVLSGRIPF 324
            +++F++F+P+YL+EHSNRTN+RLH +GT  A L L+ + LT  YR L++PF+IGYGFAWVGHFFF+KNKPATFK+P +S RGD+ +   +LSG+I F
Sbjct:    8 YQSFEQFYPFYLKEHSNRTNKRLHFVGTSLAVLALILITLTGNYRYLYVPFLIGYGFAWVGHFFFQKNKPATFKYPLFSLRGDFKLWSQILSGKIKF 104          
BLAST of mRNA_M-pyrifera_M_contig70615.16852.1 vs. uniprot
Match: A0A2W4R3Z1_9PROT (DUF962 domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4R3Z1_9PROT)

HSP 1 Score: 136 bits (343), Expect = 1.260e-39
Identity = 64/97 (65.98%), Postives = 84/97 (86.60%), Query Frame = 1
Query:   34 FKNFKEFFPYYLEEHSNRTNRRLHVIGTLSAGLMLL-YLLLTAQYRLLFLPFVIGYGFAWVGHFFFEKNKPATFKHPFYSFRGDWHMLYMVLSGRIP 321
            F++F++F+P+YL+EHSNRT+RRLHV+GT S G++LL  LLL  ++ LL+LPF+ GYGFAWVGHFFFE N+PATF++PFYS RGD+ ML  VL+GRIP
Sbjct:   12 FESFRDFYPFYLKEHSNRTSRRLHVLGT-SLGVVLLGALLLARRWELLWLPFICGYGFAWVGHFFFEHNRPATFRYPFYSLRGDFTMLRDVLTGRIP 107          
BLAST of mRNA_M-pyrifera_M_contig70615.16852.1 vs. uniprot
Match: A0A152A0K6_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A0K6_9MYCE)

HSP 1 Score: 136 bits (342), Expect = 1.630e-39
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 1
Query:   34 FKNFKEFFPYYLEEHSNRTNRRLHVIGTLSAGLMLLYLLLTAQYRLLFLPFVIGYGFAWVGHFFFEKNKPATFKHPFYSFRGDWHMLYMVLSGRIPF 324
            +  F++F+P+YL+EHSNRTNRRLH +GT  A L ++Y  LT +Y LLF+P + GYGFAWVGHFFF+KNKPATFK+P++S RGD+ M   + SG+I F
Sbjct:    9 YTTFEDFYPFYLKEHSNRTNRRLHFVGTTLALLSIVYFFLTKKYHLLFVPLIFGYGFAWVGHFFFQKNKPATFKYPWFSLRGDFRMYQSIWSGKIKF 105          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70615.16852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MAP8_9EUKA6.020e-4970.59Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A432WKL3_9GAMM1.510e-4167.01DUF962 domain-containing protein n=1 Tax=Aliidioma... [more]
A0A552WZZ4_9GAMM9.880e-4163.64DUF962 domain-containing protein n=1 Tax=Aliidioma... [more]
L8H8K0_ACACA1.840e-4061.32Membrane proteinlike, putative n=1 Tax=Acanthamoeb... [more]
F4Q9P3_CAVFA3.900e-4062.89Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
UPI00188E75F54.020e-4062.89DUF962 domain-containing protein n=1 Tax=Aliidioma... [more]
Q86IC0_DICDI5.530e-4063.92Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
UPI00064501931.120e-3959.79hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A2W4R3Z1_9PROT1.260e-3965.98DUF962 domain-containing protein n=1 Tax=Proteobac... [more]
A0A152A0K6_9MYCE1.630e-3959.79Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70615contigM-pyrifera_M_contig70615:46..433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue2.8e-30
Seed eggNOG ortholog44689.DDB0167183
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Protein of unknown function (DUF962)
EggNOG OGs2S1IP@2759,3XHQ8@554915,COG4323@1
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons2
Model size327
Cds size327
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.08083-CDS-M-pyrifera_M_contig70615:45..2551622816599.08083-CDS-M-pyrifera_M_contig70615:45..255Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70615 46..255 +
1692278069.580543-CDS-M-pyrifera_M_contig70615:45..2551692278069.580543-CDS-M-pyrifera_M_contig70615:45..255Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70615 46..255 +
1622816599.0933256-CDS-M-pyrifera_M_contig70615:316..4331622816599.0933256-CDS-M-pyrifera_M_contig70615:316..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70615 317..433 +
1692278069.6029732-CDS-M-pyrifera_M_contig70615:316..4331692278069.6029732-CDS-M-pyrifera_M_contig70615:316..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70615 317..433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70615.16852.1prot_M-pyrifera_M_contig70615.16852.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70615 46..433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70615.16852.1

>prot_M-pyrifera_M_contig70615.16852.1 ID=prot_M-pyrifera_M_contig70615.16852.1|Name=mRNA_M-pyrifera_M_contig70615.16852.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MVTKAVIKRSDFKNFKEFFPYYLEEHSNRTNRRLHVIGTLSAGLMLLYLL
LTAQYRLLFLPFVIGYGFAWVGHFFFEKNKPATFKHPFYSFRGDWHMLYM
VLSGRIPF*
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mRNA from alignment at M-pyrifera_M_contig70615:46..433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70615.16852.1 ID=mRNA_M-pyrifera_M_contig70615.16852.1|Name=mRNA_M-pyrifera_M_contig70615.16852.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=388bp|location=Sequence derived from alignment at M-pyrifera_M_contig70615:46..433+ (Macrocystis pyrifera P11B4 male)
ATGGTGACGAAGGCGGTTATCAAGAGGAGTGACTTCAAGAACTTCAAGGA GTTCTTCCCGTACTACCTGGAGGAGCACTCGAACAGAACGAACAGAAGGC TGCACGTCATTGGCACGCTTTCTGCTGGCCTCATGCTGCTCTACCTCCTG CTCACAGCGCAGTATAGGCTCTTGTTCCTCCCCTTCGTCATCGGCTACGG CTTTGCATGGGTGCGCTGGTGGATACCCTCGCGCGCTGCCCCCATGCGCG GCAGCTCACTGACCCTCACAGGTGGGACACTTCTTTTTCGAGAAGAACAA GCCAGCCACATTCAAGCACCCCTTCTACAGCTTCCGAGGAGACTGGCACA TGCTCTATATGGTTTTGAGTGGACGCATTCCCTTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70615:46..433+

>mRNA_M-pyrifera_M_contig70615.16852.1 ID=mRNA_M-pyrifera_M_contig70615.16852.1|Name=mRNA_M-pyrifera_M_contig70615.16852.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig70615:46..433+ (Macrocystis pyrifera P11B4 male)
ATGGTGACGAAGGCGGTTATCAAGAGGAGTGACTTCAAGAACTTCAAGGA
GTTCTTCCCGTACTACCTGGAGGAGCACTCGAACAGAACGAACAGAAGGC
TGCACGTCATTGGCACGCTTTCTGCTGGCCTCATGCTGCTCTACCTCCTG
CTCACAGCGCAGTATAGGCTCTTGTTCCTCCCCTTCGTCATCGGCTACGG
CTTTGCATGGATGGTGACGAAGGCGGTTATCAAGAGGAGTGACTTCAAGA
ACTTCAAGGAGTTCTTCCCGTACTACCTGGAGGAGCACTCGAACAGAACG
AACAGAAGGCTGCACGTCATTGGCACGCTTTCTGCTGGCCTCATGCTGCT
CTACCTCCTGCTCACAGCGCAGTATAGGCTCTTGTTCCTCCCCTTCGTCA
TCGGCTACGGCTTTGCATGGGTGGGACACTTCTTTTTCGAGAAGAACAAG
CCAGCCACATTCAAGCACCCCTTCTACAGCTTCCGAGGAGACTGGCACAT
GCTCTATATGGTTTTGAGTGGACGCATTCCCTTCTAGGTGGGACACTTCT
TTTTCGAGAAGAACAAGCCAGCCACATTCAAGCACCCCTTCTACAGCTTC
CGAGGAGACTGGCACATGCTCTATATGGTTTTGAGTGGACGCATTCCCTT
CTAG
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