mRNA_M-pyrifera_M_contig70597.16850.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70597.16850.1
Unique NamemRNA_M-pyrifera_M_contig70597.16850.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70597.16850.1 vs. uniprot
Match: D7FXN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN6_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 2.300e-34
Identity = 62/69 (89.86%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:    1 RRQGGDTSMAQLLYELCFCLWSVSLCDEARQDFLSCGAVPILAQQVAAATSEKVIRVSLAALKHLTEGE 207
            R QGGD+SMAQL+YELCFCLWSVSLCDE +QDF+SCGA+PILAQQVAAATSEKVIRVSLAALKHLTEGE
Sbjct:  218 RMQGGDSSMAQLMYELCFCLWSVSLCDEVKQDFMSCGAIPILAQQVAAATSEKVIRVSLAALKHLTEGE 286
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BLAST of mRNA_M-pyrifera_M_contig70597.16850.1 vs. uniprot
Match: A0A6H5LCE7_9PHAE (V-ATPase_H_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCE7_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 2.770e-33
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:    1 RRQGGDTSMAQLLYELCFCLWSVSLCDEARQDFLSCGAVPILAQQVAAATSEKVIRVSLAALKHLTEGE 207
            R QGGD+SMAQL+YELCFCLWSVSLCDE +QDF+SCGA+PILAQQVAAATSEKV+RVSLAALKHLTEGE
Sbjct:  288 RMQGGDSSMAQLMYELCFCLWSVSLCDEVKQDFMSCGAIPILAQQVAAATSEKVVRVSLAALKHLTEGE 356
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BLAST of mRNA_M-pyrifera_M_contig70597.16850.1 vs. uniprot
Match: A0A835Z9Q6_9STRA (V-type H+-transporting ATPase 54 kd subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 6.610e-18
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 RRQGGDTSMAQLLYELCFCLWSVSLCDEA--RQDFLSCGAVPILAQQVAAATSEKVIRVSLAALKHLTEG 204
            R QGGD + AQLLY LCFCLWS+SL +E    +DF +CGAVP L +QVAAA +EKV+RV+LA L++L+ G
Sbjct:  223 RMQGGDGANAQLLYALCFCLWSLSLSEEGAYNKDFQACGAVPTLVEQVAAAPAEKVVRVALATLRNLSRG 292
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BLAST of mRNA_M-pyrifera_M_contig70597.16850.1 vs. uniprot
Match: A0A7S2H8Z8_9STRA (V-type proton ATPase subunit H n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H8Z8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.630e-15
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 RRQGGDTSMAQLLYELCFCLWSVSLCDEARQDFLSCGAVPILAQQVAAATSEKVIRVSLAALKHLTEGE 207
            + QG   + AQLLYEL FCLW++S C E R +F+  G +P+L +QV AA  EKV+RVSLAAL++L EGE
Sbjct:  217 KNQGAGAN-AQLLYELTFCLWTLSFCKEVRGNFMEQGTIPVLCEQVTAAPREKVVRVSLAALRNLYEGE 284
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BLAST of mRNA_M-pyrifera_M_contig70597.16850.1 vs. uniprot
Match: A0A7S2V6V1_9STRA (V-type proton ATPase subunit H n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6V1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.520e-14
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 RRQGGDTSMAQLLYELCFCLWSVSLCDEARQDFLSCGAVPILAQQVAAATSEKVIRVSLAALKHL 195
            R QG D S AQLLY+L FCLW++SLC++   DFLS GA+PIL +QV A   EKV+RV++A L+ L
Sbjct:  223 RMQGNDAS-AQLLYDLVFCLWTLSLCEDVLPDFLSEGAIPILVEQVTALPREKVVRVAIATLRTL 286
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BLAST of mRNA_M-pyrifera_M_contig70597.16850.1 vs. uniprot
Match: A0A7S2SKW2_9STRA (V-type proton ATPase subunit H n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKW2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.080e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:   13 GDTSMAQLLYELCFCLWSVSLCDEARQDFLSCGAVPILAQQVAAATSEKVIRVSLAALKHLTEGE 207
            G  + AQLLYE+ FCLW++S CDE + DF   GAV +L +QV AA  EKV+RVSLA L++L E +
Sbjct:  214 GTGANAQLLYEVTFCLWTLSFCDEVQSDFTMHGAVSVLVEQVTAAPREKVVRVSLATLRNLAEAD 278
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BLAST of mRNA_M-pyrifera_M_contig70597.16850.1 vs. uniprot
Match: I2CP76_NANGC (V-type proton ATPase subunit H n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP76_NANGC)

HSP 1 Score: 73.6 bits (179), Expect = 1.140e-13
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:   13 GDTSMAQLLYELCFCLWSVSLCDEARQDFLSCGAVPILAQQVAAATSEKVIRVSLAALKHLTEG 204
            G    AQLLYEL FCLW+++  +E +QDF++ G VP+LA+QV+ A  EKVIRVSLAAL +L  G
Sbjct:  214 GSRGNAQLLYELIFCLWTLTFHEELKQDFIANGTVPVLAEQVSTAPREKVIRVSLAALHNLCYG 277
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BLAST of mRNA_M-pyrifera_M_contig70597.16850.1 vs. uniprot
Match: A0A024U572_9STRA (V-ATPase_H_C domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U572_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.010e-11
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   28 AQLLYELCFCLWSVSLCDEARQDFLSCGAVPILAQQVAAATSEKVIRVSLAALKHL 195
            AQL YE+CFCLW++S  DEA + F S GA+  L QQV AA  EKV+RVSL AL++L
Sbjct:  237 AQLAYEVCFCLWTLSFSDEAIEAFGSSGAITALIQQVVAAPREKVVRVSLEALENL 292
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BLAST of mRNA_M-pyrifera_M_contig70597.16850.1 vs. uniprot
Match: A0A024U5Q7_9STRA (V-type proton ATPase subunit H n=11 Tax=Aphanomyces TaxID=100860 RepID=A0A024U5Q7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.060e-11
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   28 AQLLYELCFCLWSVSLCDEARQDFLSCGAVPILAQQVAAATSEKVIRVSLAALKHL 195
            AQL YE+CFCLW++S  DEA + F S GA+  L QQV AA  EKV+RVSL AL++L
Sbjct:  237 AQLAYEVCFCLWTLSFSDEAIEAFGSSGAITALIQQVVAAPREKVVRVSLEALENL 292
[Close]
BLAST of mRNA_M-pyrifera_M_contig70597.16850.1 vs. uniprot
Match: A0A6G0XRR1_9STRA (V-type proton ATPase subunit H n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRR1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.830e-9
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   28 AQLLYELCFCLWSVSLCDEARQDFLSCGAVPILAQQVAAATSEKVIRVSLAALKHL 195
            AQL YE+CFCLW++S  D A   F   GA+  L QQV AA  EKV+RVSL AL++L
Sbjct:  241 AQLAYEVCFCLWTLSFTDAAIAAFGPSGAISALIQQVVAAPREKVVRVSLEALQNL 296
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70597.16850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FXN6_ECTSI2.300e-3489.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LCE7_9PHAE2.770e-3388.41V-ATPase_H_C domain-containing protein n=1 Tax=Ect... [more]
A0A835Z9Q6_9STRA6.610e-1861.43V-type H+-transporting ATPase 54 kd subunit n=1 Ta... [more]
A0A7S2H8Z8_9STRA2.630e-1556.52V-type proton ATPase subunit H n=1 Tax=Dictyocha s... [more]
A0A7S2V6V1_9STRA4.520e-1458.46V-type proton ATPase subunit H n=1 Tax=Fibrocapsa ... [more]
A0A7S2SKW2_9STRA6.080e-1455.38V-type proton ATPase subunit H n=1 Tax=Rhizochromu... [more]
I2CP76_NANGC1.140e-1357.81V-type proton ATPase subunit H n=1 Tax=Nannochloro... [more]
A0A024U572_9STRA6.010e-1160.71V-ATPase_H_C domain-containing protein n=1 Tax=Aph... [more]
A0A024U5Q7_9STRA6.060e-1160.71V-type proton ATPase subunit H n=11 Tax=Aphanomyce... [more]
A0A6G0XRR1_9STRA4.830e-957.14V-type proton ATPase subunit H n=1 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70597contigM-pyrifera_M_contig70597:268..1066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog2880.D7FXN6
Preferred nameATP6V1H
KEGG koko:K02144
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04150,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04150,map04721,map05110,map05120,map05152,map05323
KEGG ModuleM00160
Hectar predicted targeting categorysignal peptide
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006403,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0006897,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008340,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009894,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010506,GO:0012505,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016032,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030234,GO:0030641,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033227,GO:0033572,GO:0034220,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045851,GO:0046961,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050690,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
EggNOG free text desc.proton-transporting ATPase activity, rotational mechanism
EggNOG OGsCOG5231@1,KOG2759@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons2
Model size207
Cds size183
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70597.16850.1prot_M-pyrifera_M_contig70597.16850.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70597 268..1042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816598.9757931-CDS-M-pyrifera_M_contig70597:267..3391622816598.9757931-CDS-M-pyrifera_M_contig70597:267..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70597 268..339 -
1692278069.5211453-CDS-M-pyrifera_M_contig70597:267..3391692278069.5211453-CDS-M-pyrifera_M_contig70597:267..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70597 268..339 -
1622816598.9942415-CDS-M-pyrifera_M_contig70597:931..10421622816598.9942415-CDS-M-pyrifera_M_contig70597:931..1042Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70597 932..1042 -
1692278069.5358102-CDS-M-pyrifera_M_contig70597:931..10421692278069.5358102-CDS-M-pyrifera_M_contig70597:931..1042Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70597 932..1042 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.005114-UTR-M-pyrifera_M_contig70597:1042..10661622816599.005114-UTR-M-pyrifera_M_contig70597:1042..1066Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70597 1043..1066 -
1692278069.5458493-UTR-M-pyrifera_M_contig70597:1042..10661692278069.5458493-UTR-M-pyrifera_M_contig70597:1042..1066Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70597 1043..1066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70597.16850.1

>prot_M-pyrifera_M_contig70597.16850.1 ID=prot_M-pyrifera_M_contig70597.16850.1|Name=mRNA_M-pyrifera_M_contig70597.16850.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
MAQLLYELCFCLWSVSLCDEARQDFLSCGAVPILAQQVAAATSEKVIRVS
LAALKHLTEGE
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mRNA from alignment at M-pyrifera_M_contig70597:268..1066-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70597.16850.1 ID=mRNA_M-pyrifera_M_contig70597.16850.1|Name=mRNA_M-pyrifera_M_contig70597.16850.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=799bp|location=Sequence derived from alignment at M-pyrifera_M_contig70597:268..1066- (Macrocystis pyrifera P11B4 male)
CGCCGGCAGGGAGGTGACACGAGCATGGCGCAGCTGCTGTACGAGCTGTG
CTTCTGCCTGTGGTCGGTGTCCCTGTGCGATGAGGCCAGGCAGGACTTCT
TGAGCTGCGGAGCGGTGCCCATCTTGGCACAGCAGGTGCGTATTTACGGC
ATGCATTATCGCACACTATTTCCAAGTAGCTTAACTCTCACTGTGAGTTT
AGCAGGGTTTTTTTTTCCTTCTTGTTGTTTTCATATGGCGCTCCAACGGT
AGGCGCGATCGCCGAGGGCAACGACGCAAGCAAGCGATCAACCAACCGAC
CAAAAAAATATTTGACCAACCAATTAGTTATTCAATCAATCAACCAACCA
ACCAAACGATCAACTTGAGCAGTAATCAACCCAACCAATCAACCAACCAA
GACTGTCAGCGAAGGAGTAAACGAATCAACGACGGGACCATCCGATGAAT
CAACCAATCGATCAGTTGGGTATTCAACCAACCATTCCGCCAACAAGAAC
AGATAAATCAAGAACATAAAAATACTCAAGCAACCAACTAGCCAACCAAC
ACTTGAACCAATCGATCAATTAATCAATTAACCACTAAACGGATCAATCA
ATCAATGAATGAATCAGTCAGCCGACCCACCAATCAACCAACCAATCGAA
CATCCAGTCTACCAACCAACCAATGAATCGACCGATCAACAATTCACCGA
TGAACCTATCAATCAACCCTTGTCCAGGTCGCCGCGGCCACGTCGGAAAA
GGTCATCCGCGTCTCCCTTGCCGCCCTCAAGCACCTCACCGAGGGCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70597:268..1066-

>mRNA_M-pyrifera_M_contig70597.16850.1 ID=mRNA_M-pyrifera_M_contig70597.16850.1|Name=mRNA_M-pyrifera_M_contig70597.16850.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig70597:268..1066- (Macrocystis pyrifera P11B4 male)
ATGGCGCAGCTGCTGTACGAGCTGTGCTTCTGCCTGTGGTCGGTGTCCCT
GTGCGATGAGGCCAGGCAGGACTTCTTGAGCTGCGGAGCGGTGCCCATCT
TGGCACAGCAGATGGCGCAGCTGCTGTACGAGCTGTGCTTCTGCCTGTGG
TCGGTGTCCCTGTGCGATGAGGCCAGGCAGGACTTCTTGAGCTGCGGAGC
GGTGCCCATCTTGGCACAGCAGGTCGCCGCGGCCACGTCGGAAAAGGTCA
TCCGCGTCTCCCTTGCCGCCCTCAAGCACCTCACCGAGGGCGAGGTCGCC
GCGGCCACGTCGGAAAAGGTCATCCGCGTCTCCCTTGCCGCCCTCAAGCA
CCTCACCGAGGGCGAG
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