mRNA_M-pyrifera_M_contig70588.16849.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70588.16849.1
Unique NamemRNA_M-pyrifera_M_contig70588.16849.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70588.16849.1 vs. uniprot
Match: A0A6S7FMJ6_PARCT (Dolichol-phosphate mannosyltransferase subunit 3 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FMJ6_PARCT)

HSP 1 Score: 55.8 bits (133), Expect = 1.880e-8
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   31 LGLLLSLWAVVFFDFVPLPLDPRVRLVIDAFPFYALMVFGCYALFSIGSDLISFEDISQSAIELRK 228
            LGL+ ++W  +  D +P  +   V+ V+  FPFY ++VFGCY+L  IG  +++F D   +A  LRK
Sbjct:   11 LGLIFTIWISLLTDILPFKISKNVKDVVLPFPFYMVIVFGCYSLIVIGYRVLTFNDCEDAAESLRK 76
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BLAST of mRNA_M-pyrifera_M_contig70588.16849.1 vs. uniprot
Match: UPI000F556FEE (dolichol-phosphate mannosyltransferase subunit 3-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F556FEE)

HSP 1 Score: 49.7 bits (117), Expect = 4.890e-6
Identity = 25/65 (38.46%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   34 GLLLSLWAVVFFDFVPLPLDPRVRLVIDAFPFYALMVFGCYALFSIGSDLISFEDISQSAIELRK 228
            G+ LSLW     D +PL +  + + VI   P YAL+VFGCY+L +IG  + +F D  +++  L++
Sbjct:   12 GVALSLWITPLTDILPLKVSYKAKEVIWPMPIYALIVFGCYSLATIGYRVATFNDCVEASESLKQ 76
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BLAST of mRNA_M-pyrifera_M_contig70588.16849.1 vs. uniprot
Match: UPI0009E1D224 (dolichol-phosphate mannosyltransferase subunit 3-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1D224)

HSP 1 Score: 50.1 bits (118), Expect = 6.240e-6
Identity = 24/65 (36.92%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   34 GLLLSLWAVVFFDFVPLPLDPRVRLVIDAFPFYALMVFGCYALFSIGSDLISFEDISQSAIELRK 228
            GL  S+W  +  D +PL +  + + VI   P YAL+VFGCY+L +IG  + +F D  +++  L++
Sbjct:   41 GLAFSIWITLLTDILPLKVSYKAKEVIWPMPVYALIVFGCYSLATIGYRVATFNDCEEASESLKQ 105
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BLAST of mRNA_M-pyrifera_M_contig70588.16849.1 vs. uniprot
Match: A0A2B4RBY9_STYPI (Dolichol-phosphate mannosyltransferase subunit 3 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RBY9_STYPI)

HSP 1 Score: 47.8 bits (112), Expect = 2.770e-5
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:   34 GLLLSLWAVVFFDFVPLPLDPRVRLVIDAFPFYALMVFGCYALFSIGSDLISFEDISQSAIELRK 228
             L  SLW  +  D +PL +  + + VI   P YAL+VFGCY+L +IG  + +F D  +++  L++
Sbjct:   12 ALAFSLWITLLSDILPLKVSYKAKEVIWPIPVYALIVFGCYSLATIGYRVATFNDCVEASESLKQ 76
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BLAST of mRNA_M-pyrifera_M_contig70588.16849.1 vs. uniprot
Match: A0A5A8DQC0_CAFRO (Dolichol-phosphate mannosyltransferase subunit 3 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DQC0_CAFRO)

HSP 1 Score: 48.1 bits (113), Expect = 3.530e-5
Identity = 31/80 (38.75%), Postives = 42/80 (52.50%), Query Frame = 1 
Query:    7 RHQFILGGLGLLLSLWAVVFFDF--VPLPLDPRVRLVID----AFPFYALMVFGCYALFSIGSDLISFEDISQSAIELRK 228
            R + IL G+   L +W  +      VP P     R   D    A P +ALM  GCYALF+IGS LI+F D  ++  EL++
Sbjct:    7 RWELILTGIIGALIVWGYLVLGLLKVPFPFGEEYRQAADDALLALPGWALMTLGCYALFNIGSALITFRDTPEAGEELKE 86
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70588.16849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6S7FMJ6_PARCT1.880e-839.39Dolichol-phosphate mannosyltransferase subunit 3 n... [more]
UPI000F556FEE4.890e-638.46dolichol-phosphate mannosyltransferase subunit 3-l... [more]
UPI0009E1D2246.240e-636.92dolichol-phosphate mannosyltransferase subunit 3-l... [more]
A0A2B4RBY9_STYPI2.770e-536.92Dolichol-phosphate mannosyltransferase subunit 3 n... [more]
A0A5A8DQC0_CAFRO3.530e-538.75Dolichol-phosphate mannosyltransferase subunit 3 n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70588contigM-pyrifera_M_contig70588:844..1164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size228
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816598.9296422-CDS-M-pyrifera_M_contig70588:843..9631622816598.9296422-CDS-M-pyrifera_M_contig70588:843..963Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70588 844..963 +
1692278069.4882357-CDS-M-pyrifera_M_contig70588:843..9631692278069.4882357-CDS-M-pyrifera_M_contig70588:843..963Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70588 844..963 +
1622816598.9413579-CDS-M-pyrifera_M_contig70588:1056..11641622816598.9413579-CDS-M-pyrifera_M_contig70588:1056..1164Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70588 1057..1164 +
1692278069.506755-CDS-M-pyrifera_M_contig70588:1056..11641692278069.506755-CDS-M-pyrifera_M_contig70588:1056..1164Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70588 1057..1164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70588.16849.1prot_M-pyrifera_M_contig70588.16849.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70588 844..1164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70588.16849.1

>prot_M-pyrifera_M_contig70588.16849.1 ID=prot_M-pyrifera_M_contig70588.16849.1|Name=mRNA_M-pyrifera_M_contig70588.16849.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
MKRHQFILGGLGLLLSLWAVVFFDFVPLPLDPRVRLVIDAFPFYALMVFG
CYALFSIGSDLISFEDISQSAIELRK
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mRNA from alignment at M-pyrifera_M_contig70588:844..1164+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70588.16849.1 ID=mRNA_M-pyrifera_M_contig70588.16849.1|Name=mRNA_M-pyrifera_M_contig70588.16849.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig70588:844..1164+ (Macrocystis pyrifera P11B4 male)
ATGAAGCGACACCAGTTTATTTTGGGAGGGTTGGGGTTGTTGTTGAGTCT
GTGGGCAGTCGTCTTCTTCGACTTTGTGCCTCTTCCTCTGGATCCACGTG
TCAGATTGGTCATCGACGCAGTATGCATTCCTTCCCCGCCCCCCTCCTCC
CCTCCCCACATTTCCCACCCCTCACAAGCCCACTACCCACTTCTACTCCC
CTTTCTCCTTCAGTTTCCATTCTATGCACTCATGGTGTTCGGTTGCTATG
CGCTTTTCTCGATCGGCTCAGACCTCATCTCCTTCGAGGACATCAGTCAG
TCCGCCATTGAACTCAGGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70588:844..1164+

>mRNA_M-pyrifera_M_contig70588.16849.1 ID=mRNA_M-pyrifera_M_contig70588.16849.1|Name=mRNA_M-pyrifera_M_contig70588.16849.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig70588:844..1164+ (Macrocystis pyrifera P11B4 male)
ATGAAGCGACACCAGTTTATTTTGGGAGGGTTGGGGTTGTTGTTGAGTCT
GTGGGCAGTCGTCTTCTTCGACTTTGTGCCTCTTCCTCTGGATCCACGTG
TCAGATTGGTCATCGACGCAATGAAGCGACACCAGTTTATTTTGGGAGGG
TTGGGGTTGTTGTTGAGTCTGTGGGCAGTCGTCTTCTTCGACTTTGTGCC
TCTTCCTCTGGATCCACGTGTCAGATTGGTCATCGACGCATTTCCATTCT
ATGCACTCATGGTGTTCGGTTGCTATGCGCTTTTCTCGATCGGCTCAGAC
CTCATCTCCTTCGAGGACATCAGTCAGTCCGCCATTGAACTCAGGAAGTT
TCCATTCTATGCACTCATGGTGTTCGGTTGCTATGCGCTTTTCTCGATCG
GCTCAGACCTCATCTCCTTCGAGGACATCAGTCAGTCCGCCATTGAACTC
AGGAAG
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