mRNA_M-pyrifera_M_contig70544.16843.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70544.16843.1
Unique NamemRNA_M-pyrifera_M_contig70544.16843.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70544.16843.1 vs. uniprot
Match: A0A7S1CFC2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFC2_9STRA)

HSP 1 Score: 156 bits (395), Expect = 3.320e-44
Identity = 81/144 (56.25%), Postives = 106/144 (73.61%), Query Frame = 1
Query:    1 GGEVLRREGVLALWKGAGVFATKRFFDWGTRYAFVELVEGVVRGESGEKLGTLTKMLCALAGGTLSALSTIPLDVLVASVQKASEAGKQTPLIQTIKSELLGGNTQEILAKNTRGLVARVAHVALTTMLMKQISSAVYDKLFRE 432
            GG ++  EG  AL KGAGVF+ KRF DW TRY FV++VE  V+G+ G  L   TK+ CAL GGTLSAL+T+P+DV+VA+VQ AS+AGK+  +I+  K ++  G  +  L  +TRGLVARVAHVALTT+LMK ++S VYD L R+
Sbjct:  186 GGRIVATEGAAALLKGAGVFSFKRFCDWTTRYFFVQVVENAVQGD-GPPLSKQTKVWCALGGGTLSALATVPIDVMVATVQDASKAGKKVSIIEVYKEQMASGGIKGTLQLSTRGLVARVAHVALTTLLMKNVTSFVYDSLMRD 328          
BLAST of mRNA_M-pyrifera_M_contig70544.16843.1 vs. uniprot
Match: A0A5A8CLL9_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CLL9_CAFRO)

HSP 1 Score: 143 bits (361), Expect = 1.540e-38
Identity = 76/144 (52.78%), Postives = 108/144 (75.00%), Query Frame = 1
Query:    1 GGEVLRREGVLALWKGAGVFATKRFFDWGTRYAFVELVEGVVRG-ESGEKLGTLTKMLCALAGGTLSALSTIPLDVLVASVQKASEAGKQTPLIQTIKSELLGGNTQEILAKNTRGLVARVAHVALTTMLMKQISSAVYDKLFR 429
            G  V++ EGV  L+KG GVFA+KRF DW TR+AFVELV+ +V+G ++ +KL   TK++C+LAGG LSAL+TIP+DV V+ +Q A++AG++   +   K +L  G    +L  +TRGL+ARVAHVA+TTMLMK ++S VYD ++R
Sbjct:  251 GMRVIQAEGVGGLFKGMGVFASKRFLDWTTRFAFVELVQDLVKGRDTKKKLSNSTKLMCSLAGGCLSALATIPVDVTVSIIQDATKAGQKVSFVSIYKEQLSKG-IPAMLQMSTRGLMARVAHVAMTTMLMKTVTSNVYDLIYR 393          
BLAST of mRNA_M-pyrifera_M_contig70544.16843.1 vs. uniprot
Match: A0A6V2T0W1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2T0W1_HETAK)

HSP 1 Score: 123 bits (309), Expect = 1.980e-31
Identity = 64/144 (44.44%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    1 GGEVLRREGVLALWKGAGVFATKRFFDWGTRYAFVELVEGVV--RGESGEKLGTLTKMLCALAGGTLSALSTIPLDVLVASVQKASEAGKQTPLIQTIKSELLGGNTQEILAKNTRGLVARVAHVALTTMLMKQISSAVYDKLF 426
            G +V+R EG+ AL KG+ VF+ KR  DW TR+ F  + E VV  R +   KL    ++   L GGT S + T+PLDV VA +Q+AS+AG++ PL+Q    +   G  +++    TRG +AR+AHV+LTT LMK ++SA+YD L+
Sbjct:  182 GMKVIREEGLAALMKGSAVFSAKRVADWSTRFLFCVVAENVVYKRSDPDYKLTRAEQIAAGLLGGTASTVCTLPLDVAVAQIQQASKAGQKVPLVQLFADQYREGGVKQLTGMATRGFLARLAHVSLTTALMKTVTSAIYDALY 325          
BLAST of mRNA_M-pyrifera_M_contig70544.16843.1 vs. uniprot
Match: A0A7S0P1L8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P1L8_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 7.070e-31
Identity = 66/147 (44.90%), Postives = 91/147 (61.90%), Query Frame = 1
Query:    1 GGEVLRREGVLALWKGAGVFATKRFFDWGTRYAFVELVE------GVVRGESGEKLGTLTKMLCALAGGTLSALSTIPLDVLVASVQKASEAGKQTPLIQTIKSELLGGNTQEILAKNTRGLVARVAHVALTTMLMKQISSAVYDKL 423
            GG V+R EGV +L KGAG FATKR FDWGTR+AF    E      G+   E+ +KL    +++ +  GGTLSA +T+PLDV+VA +Q+A  AGKQ  +I+T  ++   G  + +    TRG   R AHV LTT+++K  +  V D L
Sbjct:   24 GGRVIRDEGVSSLMKGAGTFATKRVFDWGTRFAFSNAAEDLLFRRGLPTEEAKKKLSYGQQLIASTIGGTLSAAATVPLDVMVAQIQQAGSAGKQVGMIETFVAQYREGGFERVAGFATRGFALRWAHVTLTTIVVKNGTVLVTDLL 170          
BLAST of mRNA_M-pyrifera_M_contig70544.16843.1 vs. uniprot
Match: A0A7S0JBK3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JBK3_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 2.080e-29
Identity = 66/147 (44.90%), Postives = 91/147 (61.90%), Query Frame = 1
Query:    1 GGEVLRREGVLALWKGAGVFATKRFFDWGTRYAFVELVE------GVVRGESGEKLGTLTKMLCALAGGTLSALSTIPLDVLVASVQKASEAGKQTPLIQTIKSELLGGNTQEILAKNTRGLVARVAHVALTTMLMKQISSAVYDKL 423
            GG V+R EGV +L KGAG FATKR FDWGTR+AF    E      G+   E+ +KL    +++ +  GGTLSA +T+PLDV+VA +Q+A  AGKQ  +I+T  ++   G  + +    TRG   R AHV LTT+++K  +  V D L
Sbjct:  169 GGRVIRDEGVSSLMKGAGTFATKRVFDWGTRFAFSNAAEDLLFRRGLPTEEAKKKLSYGQQLIASTIGGTLSAAATVPLDVMVAQIQQAGSAGKQVGMIETFVAQYREGGFERVAGFATRGFALRWAHVTLTTIVVKNGTVLVTDLL 315          
BLAST of mRNA_M-pyrifera_M_contig70544.16843.1 vs. uniprot
Match: X6LPB4_RETFI (Mitochondrial carrier domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LPB4_RETFI)

HSP 1 Score: 110 bits (274), Expect = 3.320e-28
Identity = 60/128 (46.88%), Postives = 83/128 (64.84%), Query Frame = 1
Query:   52 GVFATKRFFDWGTRYAFVELVEGVVRGESG----EKLGTLTKMLCALAGGTLSALSTIPLDVLVASVQKASEAGKQTPLIQTIKSELLGGNTQEILAKNTRGLVARVAHVALTTMLMKQISSAVYDKL 423
            GVF+ KRF DW TRY FV LVE  +R   G    +KL    +M+ +LAGGTLSAL+T+P+DV V+ +Q+AS+ G++  +I+  + +   G     +   TRGLVARV HVALT ++MK +SS  Y  L
Sbjct:    2 GVFSVKRFADWTTRYGFVVLVEHEMRQYLGMSEKQKLSKSQEMISSLAGGTLSALATVPIDVTVSMIQQASKKGQKVSVIEIYREKFRSGGVGATMQLATRGLVARVTHVALTVLMMKNVSSWFYSFL 129          
BLAST of mRNA_M-pyrifera_M_contig70544.16843.1 vs. uniprot
Match: A0A4D9DDE7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDE7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.020e-27
Identity = 60/141 (42.55%), Postives = 93/141 (65.96%), Query Frame = 1
Query:   10 VLRREGVLALWKGAGVFATKRFFDWGTRYAFVELVEGVV--RGESGEKLGTLTKMLCALAGGTLSALSTIPLDVLVASVQKASEAGKQTPLIQTIKSELLGGNTQEILAKNTRGLVARVAHVALTTMLMKQISSAVYDKLF 426
            V+++EG+ AL KG+  F+ KR  DWGTR+ F  L E +   +G++   L    K+  +L GGTLSA  T+PLDV+VA +Q+AS+AG++  +++T +SE   G  + +    T+G +AR  HVALTT LMK ++S VY+ ++
Sbjct:  223 VIQKEGLPALMKGSLTFSLKRVADWGTRFYFAVLSEDLFFRQGDASHVLTNQEKLAASLIGGTLSAFLTLPLDVMVAQIQQASKAGEKVSVLETFQSEFRQGGWERVAGFATKGFLARTLHVALTTALMKTLTSVVYEWVY 363          
BLAST of mRNA_M-pyrifera_M_contig70544.16843.1 vs. uniprot
Match: F0W499_9STRA (Mitochondrial Carrier (MC) Family putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W499_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.430e-27
Identity = 59/141 (41.84%), Postives = 94/141 (66.67%), Query Frame = 1
Query:    1 GGEVLRREGVLALWKGAGVFATKRFFDWGTRYAFVELVEGVV--RGESGEKLGTLTKMLCALAGGTLSALSTIPLDVLVASVQKASEAGKQTPLIQTIKSELLGGNTQEILAKNTRGLVARVAHVALTTMLMKQISSAVYD 417
            G +V++ EG+ AL KG+ VF+ KR  DW TR+ F  + E  +  R +   KL    K+  +L GG LS++STIP+DV+VA +Q+AS+AG +  +I+T++ ++  G  +++    T GL+ RVAHV+LTT++MK  +S VY+
Sbjct:  220 GMKVIQNEGIGALMKGSAVFSMKRVADWSTRFFFSVMCEEYLYKRDDPNRKLTNGQKVTASLLGGVLSSISTIPIDVMVAQIQQASKAGTRVSIIETMREQIRQGGIRQVAGFATSGLMVRVAHVSLTTVIMKTATSIVYE 360          
BLAST of mRNA_M-pyrifera_M_contig70544.16843.1 vs. uniprot
Match: A0A024GJJ7_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GJJ7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 4.200e-27
Identity = 60/141 (42.55%), Postives = 92/141 (65.25%), Query Frame = 1
Query:    1 GGEVLRREGVLALWKGAGVFATKRFFDWGTRYAFVELVEGVV--RGESGEKLGTLTKMLCALAGGTLSALSTIPLDVLVASVQKASEAGKQTPLIQTIKSELLGGNTQEILAKNTRGLVARVAHVALTTMLMKQISSAVYD 417
            G +V++ EGV AL KG+ VF+ KR  DW TR+ F  + E  +  R +   KL    K+  +L GG LS++STIP+DV+VA +Q+AS+AG +  +  T++ +L  G  +++    T GL+ RVAHV+LTT++MK  +S VY+
Sbjct:  119 GVKVIQNEGVGALMKGSAVFSMKRVADWSTRFFFSVMCEEYLYKRDDPNRKLTNGQKVTASLLGGVLSSISTIPIDVMVAQIQQASKAGTRVSIFGTMQEQLRQGGIRQVAGFATSGLMVRVAHVSLTTVIMKTATSIVYE 259          
BLAST of mRNA_M-pyrifera_M_contig70544.16843.1 vs. uniprot
Match: X6MVB8_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MVB8_RETFI)

HSP 1 Score: 110 bits (275), Expect = 1.600e-26
Identity = 67/154 (43.51%), Postives = 92/154 (59.74%), Query Frame = 1
Query:    1 GGEVLRREGVLALW---------KGAGVFATKRFFDWGTRYAFVELVEGVVRGESG----EKLGTLTKMLCALAGGTLSALSTIPLDVLVASVQKASEAGKQTPLIQTIKSELLGGNTQEILAKNTRGLVARVAHVALTTMLMKQISSAVYDKL 423
            GGE++R EG L            KG G    KRF DW TRY FV LVE  +R + G    +KL    +M+ +LAGGTLSAL+T+P+DV V+ +Q+AS+ G++  + +  + +   G  +  L   TRGLVARV HVALT ++MK +SS  Y  L
Sbjct:  155 GGELIRTEGGLMSLTKEPKKKKKKGHGRVFVKRFADWTTRYGFVVLVEHGMRKQLGLSEKQKLSKTQEMVSSLAGGTLSALATVPIDVTVSLIQQASKKGQKVSVFEIYREQFRSGGLRGTLQLATRGLVARVTHVALTVLMMKNVSSWCYSFL 308          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70544.16843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A7S1CFC2_9STRA3.320e-4456.25Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5A8CLL9_CAFRO1.540e-3852.78Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A6V2T0W1_HETAK1.980e-3144.44Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S0P1L8_9EUKA7.070e-3144.90Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0JBK3_9EUKA2.080e-2944.90Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
X6LPB4_RETFI3.320e-2846.88Mitochondrial carrier domain-containing protein n=... [more]
A0A4D9DDE7_9STRA1.020e-2742.55Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
F0W499_9STRA3.430e-2741.84Mitochondrial Carrier (MC) Family putative n=1 Tax... [more]
A0A024GJJ7_9STRA4.200e-2742.55Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
X6MVB8_RETFI1.600e-2643.51Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70544contigM-pyrifera_M_contig70544:741..1175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue1.6e-25
Seed eggNOG ortholog42099.EPrPV00000013293
KEGG koko:K15100
KEGG TC2.A.29.7
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005469,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006839,GO:0006855,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015138,GO:0015141,GO:0015238,GO:0015291,GO:0015297,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015741,GO:0015744,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071422,GO:0071702,GO:0098656,GO:1903825,GO:1905039
EggNOG free text desc.Mitochondrial carrier protein
EggNOG OGs1MK72@121069,KOG0756@1,KOG0756@2759
COG Functional cat.C
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size435
Cds size435
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816598.4186676-CDS-M-pyrifera_M_contig70544:740..11751622816598.4186676-CDS-M-pyrifera_M_contig70544:740..1175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70544 741..1175 -
1692278069.111944-CDS-M-pyrifera_M_contig70544:740..11751692278069.111944-CDS-M-pyrifera_M_contig70544:740..1175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70544 741..1175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70544.16843.1prot_M-pyrifera_M_contig70544.16843.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70544 741..1175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70544.16843.1

>prot_M-pyrifera_M_contig70544.16843.1 ID=prot_M-pyrifera_M_contig70544.16843.1|Name=mRNA_M-pyrifera_M_contig70544.16843.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
GGEVLRREGVLALWKGAGVFATKRFFDWGTRYAFVELVEGVVRGESGEKL
GTLTKMLCALAGGTLSALSTIPLDVLVASVQKASEAGKQTPLIQTIKSEL
LGGNTQEILAKNTRGLVARVAHVALTTMLMKQISSAVYDKLFRE*
back to top

mRNA from alignment at M-pyrifera_M_contig70544:741..1175-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70544.16843.1 ID=mRNA_M-pyrifera_M_contig70544.16843.1|Name=mRNA_M-pyrifera_M_contig70544.16843.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig70544:741..1175- (Macrocystis pyrifera P11B4 male)
GGCGGGGAGGTGTTGCGTCGGGAAGGGGTGTTGGCTCTGTGGAAGGGAGC AGGAGTGTTTGCGACGAAGCGCTTCTTCGACTGGGGCACTCGGTACGCGT TTGTGGAGTTGGTGGAAGGTGTGGTGCGCGGAGAGAGTGGAGAGAAGCTG GGCACGCTCACCAAAATGCTCTGTGCCCTCGCGGGAGGTACGCTCTCTGC CCTCTCCACAATTCCGCTTGACGTGCTCGTCGCATCAGTACAGAAAGCAT CCGAGGCAGGGAAGCAGACGCCACTCATCCAAACCATCAAGTCGGAGCTC CTGGGCGGAAACACACAAGAAATCCTCGCAAAAAACACCAGAGGCCTCGT CGCCAGAGTGGCACACGTCGCTCTCACAACCATGCTCATGAAACAGATCT CCTCCGCTGTCTACGACAAATTATTCCGCGAATAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig70544:741..1175-

>mRNA_M-pyrifera_M_contig70544.16843.1 ID=mRNA_M-pyrifera_M_contig70544.16843.1|Name=mRNA_M-pyrifera_M_contig70544.16843.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig70544:741..1175- (Macrocystis pyrifera P11B4 male)
GGCGGGGAGGTGTTGCGTCGGGAAGGGGTGTTGGCTCTGTGGAAGGGAGC
AGGAGTGTTTGCGACGAAGCGCTTCTTCGACTGGGGCACTCGGTACGCGT
TTGTGGAGTTGGTGGAAGGTGTGGTGCGCGGAGAGAGTGGAGAGAAGCTG
GGCACGCTCACCAAAATGCTCTGTGCCCTCGCGGGAGGTACGCTCTCTGC
CCTCTCCACAATTCCGCTTGACGTGCTCGTCGCATCAGTACAGAAAGCAT
CCGAGGCAGGGAAGCAGACGCCACTCATCCAAACCATCAAGTCGGAGCTC
CTGGGCGGAAACACACAAGAAATCCTCGCAAAAAACACCAGAGGCCTCGT
CGCCAGAGTGGCACACGTCGCTCTCACAACCATGCTCATGAAACAGATCT
CCTCCGCTGTCTACGACAAATTATTCCGCGAATAAGGCGGGGAGGTGTTG
CGTCGGGAAGGGGTGTTGGCTCTGTGGAAGGGAGCAGGAGTGTTTGCGAC
GAAGCGCTTCTTCGACTGGGGCACTCGGTACGCGTTTGTGGAGTTGGTGG
AAGGTGTGGTGCGCGGAGAGAGTGGAGAGAAGCTGGGCACGCTCACCAAA
ATGCTCTGTGCCCTCGCGGGAGGTACGCTCTCTGCCCTCTCCACAATTCC
GCTTGACGTGCTCGTCGCATCAGTACAGAAAGCATCCGAGGCAGGGAAGC
AGACGCCACTCATCCAAACCATCAAGTCGGAGCTCCTGGGCGGAAACACA
CAAGAAATCCTCGCAAAAAACACCAGAGGCCTCGTCGCCAGAGTGGCACA
CGTCGCTCTCACAACCATGCTCATGAAACAGATCTCCTCCGCTGTCTACG
ACAAATTATTCCGCGAATAA
back to top