mRNA_M-pyrifera_M_contig7052.16836.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7052.16836.1
Unique NamemRNA_M-pyrifera_M_contig7052.16836.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7052.16836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7052contigM-pyrifera_M_contig7052:6564..7154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size591
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7052.16836.1prot_M-pyrifera_M_contig7052.16836.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7052 6772..7074 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.9703338-UTR-M-pyrifera_M_contig7052:6563..67711622816597.9703338-UTR-M-pyrifera_M_contig7052:6563..6771Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7052 6564..6771 +
1692278068.836012-UTR-M-pyrifera_M_contig7052:6563..67711692278068.836012-UTR-M-pyrifera_M_contig7052:6563..6771Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7052 6564..6771 +
1622816597.996835-UTR-M-pyrifera_M_contig7052:7074..71541622816597.996835-UTR-M-pyrifera_M_contig7052:7074..7154Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7052 7075..7154 +
1692278068.8637192-UTR-M-pyrifera_M_contig7052:7074..71541692278068.8637192-UTR-M-pyrifera_M_contig7052:7074..7154Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7052 7075..7154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.985918-CDS-M-pyrifera_M_contig7052:6771..70741622816597.985918-CDS-M-pyrifera_M_contig7052:6771..7074Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7052 6772..7074 +
1692278068.8531199-CDS-M-pyrifera_M_contig7052:6771..70741692278068.8531199-CDS-M-pyrifera_M_contig7052:6771..7074Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7052 6772..7074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7052.16836.1

>prot_M-pyrifera_M_contig7052.16836.1 ID=prot_M-pyrifera_M_contig7052.16836.1|Name=mRNA_M-pyrifera_M_contig7052.16836.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MAREWSGQTRPESAAMYGIYVRVIYRDLGGRDGVAWLWFTAICSRAVVAV
VAVVALVVNGIVVGITAVVVLDIAVDWHRDVVDWLASRLALSPTLSLVWS
*
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mRNA from alignment at M-pyrifera_M_contig7052:6564..7154+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7052.16836.1 ID=mRNA_M-pyrifera_M_contig7052.16836.1|Name=mRNA_M-pyrifera_M_contig7052.16836.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=591bp|location=Sequence derived from alignment at M-pyrifera_M_contig7052:6564..7154+ (Macrocystis pyrifera P11B4 male)
TTATTTTTACTAACAATATTTGGTCCTATTTACTATGGTCCCCCCTAATA
CTATAGTACTCAGCCGGCACGATAGAGGGACTACTGTTGTATAAATTGTA
TCCCGTGTGTCGATTTAACTCGTTGGTGCCTTGGCAACAGCACCTCGGAG
GCCCTCGCGTTTGTCAACCCGAACCTGATCGATCCCAGGAGGATGAGGTC
CGGTGGAGATGGCTCGAGAGTGGTCTGGGCAGACAAGACCAGAGAGTGCC
GCAATGTATGGTATCTATGTGCGCGTGATATATAGGGATCTTGGCGGTAG
GGACGGCGTTGCTTGGTTATGGTTTACAGCTATTTGTAGTCGCGCGGTTG
TCGCTGTTGTTGCTGTTGTTGCTCTTGTCGTCAATGGCATTGTCGTCGGC
ATTACCGCTGTGGTTGTCCTTGACATTGCTGTTGATTGGCATCGCGATGT
CGTTGATTGGTTGGCATCGAGGTTGGCGTTATCGCCGACGTTGTCGTTAG
TGTGGTCATAGCCGCTGTCGTTTGTCAATGAAAAAAAAATGCGCTGTAAC
ATGTGCGAAGCGCAGTGCATGACATGTTATTATAGCTGTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7052:6564..7154+

>mRNA_M-pyrifera_M_contig7052.16836.1 ID=mRNA_M-pyrifera_M_contig7052.16836.1|Name=mRNA_M-pyrifera_M_contig7052.16836.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig7052:6564..7154+ (Macrocystis pyrifera P11B4 male)
ATGGCTCGAGAGTGGTCTGGGCAGACAAGACCAGAGAGTGCCGCAATGTA
TGGTATCTATGTGCGCGTGATATATAGGGATCTTGGCGGTAGGGACGGCG
TTGCTTGGTTATGGTTTACAGCTATTTGTAGTCGCGCGGTTGTCGCTGTT
GTTGCTGTTGTTGCTCTTGTCGTCAATGGCATTGTCGTCGGCATTACCGC
TGTGGTTGTCCTTGACATTGCTGTTGATTGGCATCGCGATGTCGTTGATT
GGTTGGCATCGAGGTTGGCGTTATCGCCGACGTTGTCGTTAGTGTGGTCA
TAGATGGCTCGAGAGTGGTCTGGGCAGACAAGACCAGAGAGTGCCGCAAT
GTATGGTATCTATGTGCGCGTGATATATAGGGATCTTGGCGGTAGGGACG
GCGTTGCTTGGTTATGGTTTACAGCTATTTGTAGTCGCGCGGTTGTCGCT
GTTGTTGCTGTTGTTGCTCTTGTCGTCAATGGCATTGTCGTCGGCATTAC
CGCTGTGGTTGTCCTTGACATTGCTGTTGATTGGCATCGCGATGTCGTTG
ATTGGTTGGCATCGAGGTTGGCGTTATCGCCGACGTTGTCGTTAGTGTGG
TCATAG
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