mRNA_M-pyrifera_M_contig70508.16834.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70508.16834.1
Unique NamemRNA_M-pyrifera_M_contig70508.16834.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70508.16834.1 vs. uniprot
Match: A0A7S0JTM7_CAFRO (Hypothetical protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JTM7_CAFRO)

HSP 1 Score: 94.0 bits (232), Expect = 1.060e-19
Identity = 51/137 (37.23%), Postives = 84/137 (61.31%), Query Frame = 1 
Query:    4 MWW--ELTNADKYAPATDDGATGLTFNLISDQVAPDFITKSLGSTSILGVYTLIIVTLGGLFRSAFLLPVESIPFTNMDDCRDLLHLYALKLIEERSFDVVSA----HLRNEIHLFKLLVQLHKSNEVLVRITRRKD 396
            +WW  E+   DK+ PA + G  GL F  +SD++AP+ +T SLG  SI+ VYTL+++T+ GLFR   ++  + + +  ++DCR     Y ++L E   F         HL NE++L++ L+  ++S E+L RITR++D
Sbjct: 1504 LWWTAEIPADDKFGPAPEGG--GLEFITVSDRIAPNLLTSSLGG-SIIAVYTLLLITVAGLFRGTCVVKSQQVMYQELEDCR-----YLMELCEAIHFAEADTQYPRHLENEVYLYETLIGFYRSPEILARITRKRD 1632
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BLAST of mRNA_M-pyrifera_M_contig70508.16834.1 vs. uniprot
Match: A0A7S1C7R6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7R6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.400e-17
Identity = 49/136 (36.03%), Postives = 77/136 (56.62%), Query Frame = 1 
Query:    1 RMWWELTNADKYAPATDDGA-----TGLTFNLISDQVAPDFITKSLGSTSILGVYTLIIVTLGGLFRSAFLLPVESIPFTNMDDCRDLLHLYALKLIEERSFDVVSAHLRNEIHLFKLLVQLHKSNEVLVRITRRK 393
            R+WWEL   D  AP    G       GL F ++SD++AP+F+T   GS  ILG+Y  +++ +G L RS    P E I F  +    DL+ L     I +    V   HL++E+ L+ +L++L++S E+L+RI++ K
Sbjct:   79 RLWWELMMQDVPAPGGGGGGYAGSDIGLEFVVVSDRIAPNFLTSGFGSYGILGIYVGLVLAIGRLVRSGLGSPTERIMFEEIMAPDDLMELVEGIRIAQAGHYV--GHLKDEMRLYNILIKLYRSPEILLRISKEK 212
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BLAST of mRNA_M-pyrifera_M_contig70508.16834.1 vs. uniprot
Match: A0A5A8D3B8_CAFRO (Uncharacterized protein n=7 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D3B8_CAFRO)

HSP 1 Score: 81.3 bits (199), Expect = 3.040e-15
Identity = 43/117 (36.75%), Postives = 73/117 (62.39%), Query Frame = 1 
Query:   58 ATGLTFNLISDQVAPDFITKSLGSTSILGVYTLIIVTLGGLFRSAFLLPVESIPFTNMDDCRDLLHLYALKLIEERSFDVVSA----HLRNEIHLFKLLVQLHKSNEVLVRITRRKD 396
            A G +F  +SD++AP+ +T SLG  SI+ VYTL+++T+ GLFR   ++  + + +  ++DCR     Y ++L E   F         HL NE++L++ L+  ++S E+L RITR++D
Sbjct: 4623 AAGSSFITVSDRIAPNLLTSSLGG-SIIAVYTLLLITVAGLFRGTCVVKSQQVMYQELEDCR-----YLMELCEAIHFAEADTQYPRHLENEVYLYETLIGFYRSPEILARITRKRD 4733
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BLAST of mRNA_M-pyrifera_M_contig70508.16834.1 vs. uniprot
Match: C1DZW1_MICCC (Piezo_RRas_bdg domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1DZW1_MICCC)

HSP 1 Score: 53.5 bits (127), Expect = 1.450e-5
Identity = 35/120 (29.17%), Postives = 65/120 (54.17%), Query Frame = 1 
Query:   46 TDDGATGLTFNLISDQVAPDFITK-SLGSTSILGVYTLIIVTLGGLFRSAFLLPVESIPFTNMDDCRDLLHLY-ALKLIEERSFDVVSAHLRNEIHLFKLLVQLHKSNEVLVRITRRKDV 399
            T++G+ G+ +  +SD+     + +  L S S+L +Y  I V +GG+ R  F   +E +    + +   LL L   L+++    +       R+EI LF  L+Q+ +S ++L+++TR KDV
Sbjct: 3951 TEEGSQGVLYATMSDRFLSGVVEQLGLDSYSMLALYAFIFVAIGGVVRRFFQFKIEDVMIYEIPNPDYLLRLCRGLRMLRAHRYPGCR---RDEIKLFHTLIQMLRSPDILIKVTRNKDV 4067
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70508.16834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S0JTM7_CAFRO1.060e-1937.23Hypothetical protein n=2 Tax=Cafeteria roenbergens... [more]
A0A7S1C7R6_9STRA2.400e-1736.03Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5A8D3B8_CAFRO3.040e-1536.75Uncharacterized protein n=7 Tax=Cafeteria roenberg... [more]
C1DZW1_MICCC1.450e-529.17Piezo_RRas_bdg domain-containing protein n=2 Tax=M... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70508contigM-pyrifera_M_contig70508:354..863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size402
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70508.16834.1prot_M-pyrifera_M_contig70508.16834.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70508 357..863 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.8659515-UTR-M-pyrifera_M_contig70508:353..3561622816597.8659515-UTR-M-pyrifera_M_contig70508:353..356Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70508 354..356 +
1692278068.7788188-UTR-M-pyrifera_M_contig70508:353..3561692278068.7788188-UTR-M-pyrifera_M_contig70508:353..356Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70508 354..356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.8807828-CDS-M-pyrifera_M_contig70508:356..6121622816597.8807828-CDS-M-pyrifera_M_contig70508:356..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70508 357..612 +
1692278068.793017-CDS-M-pyrifera_M_contig70508:356..6121692278068.793017-CDS-M-pyrifera_M_contig70508:356..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70508 357..612 +
1622816597.8935452-CDS-M-pyrifera_M_contig70508:720..8631622816597.8935452-CDS-M-pyrifera_M_contig70508:720..863Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70508 721..863 +
1692278068.8029628-CDS-M-pyrifera_M_contig70508:720..8631692278068.8029628-CDS-M-pyrifera_M_contig70508:720..863Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70508 721..863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70508.16834.1

>prot_M-pyrifera_M_contig70508.16834.1 ID=prot_M-pyrifera_M_contig70508.16834.1|Name=mRNA_M-pyrifera_M_contig70508.16834.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
MWWELTNADKYAPATDDGATGLTFNLISDQVAPDFITKSLGSTSILGVYT
LIIVTLGGLFRSAFLLPVESIPFTNMDDCRDLLHLYALKLIEERSFDVVS
AHLRNEIHLFKLLVQLHKSNEVLVRITRRKDV*
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mRNA from alignment at M-pyrifera_M_contig70508:354..863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70508.16834.1 ID=mRNA_M-pyrifera_M_contig70508.16834.1|Name=mRNA_M-pyrifera_M_contig70508.16834.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig70508:354..863+ (Macrocystis pyrifera P11B4 male)
CGAATGTGGTGGGAATTGACAAACGCAGACAAGTATGCCCCAGCAACTGA
TGATGGGGCAACTGGCTTAACGTTCAACTTGATTTCTGATCAAGTTGCAC
CAGATTTTATTACAAAATCGCTAGGGTCTACGTCAATTCTCGGTGTGTAC
ACATTGATCATAGTGACGCTTGGAGGTTTGTTCCGCTCTGCCTTCCTCCT
CCCTGTAGAAAGCATTCCTTTCACCAATATGGATGACTGCCGAGATCTCC
TCCATTTGTGTGAAGGAATCAAGATCGCAGAATACTCTGCCGCCATGGCT
CTCAAGCTGTGGCGCCAATCACTGCCACATCGACGCAAACGTTGGAAACG
AAGAGGGCTAAGTGGAGATGCCTTGAAGCTCATCGAAGAACGTTCCTTTG
ATGTTGTATCAGCGCATCTCCGCAATGAAATTCACCTCTTCAAGCTTCTT
GTGCAACTTCACAAGAGCAATGAAGTCTTGGTACGCATTACCAGACGCAA
GGATGTGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70508:354..863+

>mRNA_M-pyrifera_M_contig70508.16834.1 ID=mRNA_M-pyrifera_M_contig70508.16834.1|Name=mRNA_M-pyrifera_M_contig70508.16834.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig70508:354..863+ (Macrocystis pyrifera P11B4 male)
ATGTGGTGGGAATTGACAAACGCAGACAAGTATGCCCCAGCAACTGATGA
TGGGGCAACTGGCTTAACGTTCAACTTGATTTCTGATCAAGTTGCACCAG
ATTTTATTACAAAATCGCTAGGGTCTACGTCAATTCTCGGTGTGTACACA
TTGATCATAGTGACGCTTGGAGGTTTGTTCCGCTCTGCCTTCCTCCTCCC
TGTAGAAAGCATTCCTTTCACCAATATGGATGACTGCCGAGATCTCCTCC
ATTTGTATGTGGTGGGAATTGACAAACGCAGACAAGTATGCCCCAGCAAC
TGATGATGGGGCAACTGGCTTAACGTTCAACTTGATTTCTGATCAAGTTG
CACCAGATTTTATTACAAAATCGCTAGGGTCTACGTCAATTCTCGGTGTG
TACACATTGATCATAGTGACGCTTGGAGGTTTGTTCCGCTCTGCCTTCCT
CCTCCCTGTAGAAAGCATTCCTTTCACCAATATGGATGACTGCCGAGATC
TCCTCCATTTGTATGCCTTGAAGCTCATCGAAGAACGTTCCTTTGATGTT
GTATCAGCGCATCTCCGCAATGAAATTCACCTCTTCAAGCTTCTTGTGCA
ACTTCACAAGAGCAATGAAGTCTTGGTACGCATTACCAGACGCAAGGATG
TGTAGATGCCTTGAAGCTCATCGAAGAACGTTCCTTTGATGTTGTATCAG
CGCATCTCCGCAATGAAATTCACCTCTTCAAGCTTCTTGTGCAACTTCAC
AAGAGCAATGAAGTCTTGGTACGCATTACCAGACGCAAGGATGTGTAG
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