mRNA_M-pyrifera_M_contig70505.16831.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70505.16831.1
Unique NamemRNA_M-pyrifera_M_contig70505.16831.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70505.16831.1 vs. uniprot
Match: A0A843FSZ7_9EURY (Uncharacterized protein n=1 Tax=Methanobrevibacter sp. TaxID=66852 RepID=A0A843FSZ7_9EURY)

HSP 1 Score: 61.6 bits (148), Expect = 1.350e-9
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:   37 YFLNLDKKFFVDLKTYNR--EVSPTILL-ACGNGDGGGDYFGEDKELVGSWAGDHVGVADKVPED 222
            Y +N  KK F+ +        + P  LL A GNG GGGDY+G + EL+GSWA D +GVA+++P+D
Sbjct:  125 YIINFTKKMFIRIPKRGECLTIHPLPLLCADGNGRGGGDYYGSNMELIGSWAYDKIGVANEIPDD 189
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BLAST of mRNA_M-pyrifera_M_contig70505.16831.1 vs. uniprot
Match: A0A6C0K639_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K639_9ZZZZ)

HSP 1 Score: 60.1 bits (144), Expect = 3.340e-9
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   34 RYFLNLDKKFFVDLKTYNREVSPT-ILLACGNGDGGGDYFGEDKELVGSWAGDHVGVADKVPEDGDWTELKPCF 252
            +Y LN  KK F+D K   +E+ P  IL+A GNG GGGDY+G+ KE  G+WA D + V +      ++ EL  C 
Sbjct:  111 QYILNHTKKLFIDKKKI-KEIHPLPILVAEGNGRGGGDYYGDGKEHSGTWARDVISVNNSTEGYEEFAELNNCI 183
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BLAST of mRNA_M-pyrifera_M_contig70505.16831.1 vs. uniprot
Match: A0A1Y3TPQ1_9FIRM (Uncharacterized protein n=3 Tax=Firmicutes TaxID=1239 RepID=A0A1Y3TPQ1_9FIRM)

HSP 1 Score: 51.2 bits (121), Expect = 1.080e-5
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:   76 KTYNREVSP-TILLACGNGDGGGDYFGEDKELVGSWAGDH--VGVADKVPEDGDWTELKPCF 252
            K  +  ++P +++LA GNG GGGDY+  + ELVGSWA D   + + D  P+  D+ EL+P F
Sbjct:  137 KILSATIAPLSLMLALGNGQGGGDYYAHNHELVGSWAKDSSSLEITDVKPKS-DYKELQPEF 197
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70505.16831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A843FSZ7_9EURY1.350e-946.15Uncharacterized protein n=1 Tax=Methanobrevibacter... [more]
A0A6C0K639_9ZZZZ3.340e-943.24Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A1Y3TPQ1_9FIRM1.080e-543.55Uncharacterized protein n=3 Tax=Firmicutes TaxID=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70505contigM-pyrifera_M_contig70505:34..285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.7469804-CDS-M-pyrifera_M_contig70505:33..2851622816597.7469804-CDS-M-pyrifera_M_contig70505:33..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70505 34..285 +
1692278068.727061-CDS-M-pyrifera_M_contig70505:33..2851692278068.727061-CDS-M-pyrifera_M_contig70505:33..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70505 34..285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70505.16831.1prot_M-pyrifera_M_contig70505.16831.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70505 34..285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70505.16831.1

>prot_M-pyrifera_M_contig70505.16831.1 ID=prot_M-pyrifera_M_contig70505.16831.1|Name=mRNA_M-pyrifera_M_contig70505.16831.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
KLKATAWKDVKRYFLNLDKKFFVDLKTYNREVSPTILLACGNGDGGGDYF
GEDKELVGSWAGDHVGVADKVPEDGDWTELKPCF
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mRNA from alignment at M-pyrifera_M_contig70505:34..285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70505.16831.1 ID=mRNA_M-pyrifera_M_contig70505.16831.1|Name=mRNA_M-pyrifera_M_contig70505.16831.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig70505:34..285+ (Macrocystis pyrifera P11B4 male)
AAATTGAAGGCAACTGCGTGGAAGGATGTCAAGCGCTACTTTTTGAACCT
TGACAAGAAATTCTTTGTCGACCTCAAGACGTACAACCGCGAAGTCTCTC
CAACCATACTGTTGGCATGCGGCAATGGCGATGGCGGAGGTGATTACTTT
GGTGAGGACAAAGAGCTCGTAGGATCATGGGCAGGAGATCATGTCGGTGT
GGCTGACAAAGTACCAGAAGATGGGGATTGGACTGAACTCAAACCTTGCT
TT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70505:34..285+

>mRNA_M-pyrifera_M_contig70505.16831.1 ID=mRNA_M-pyrifera_M_contig70505.16831.1|Name=mRNA_M-pyrifera_M_contig70505.16831.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig70505:34..285+ (Macrocystis pyrifera P11B4 male)
AAATTGAAGGCAACTGCGTGGAAGGATGTCAAGCGCTACTTTTTGAACCT
TGACAAGAAATTCTTTGTCGACCTCAAGACGTACAACCGCGAAGTCTCTC
CAACCATACTGTTGGCATGCGGCAATGGCGATGGCGGAGGTGATTACTTT
GGTGAGGACAAAGAGCTCGTAGGATCATGGGCAGGAGATCATGTCGGTGT
GGCTGACAAAGTACCAGAAGATGGGGATTGGACTGAACTCAAACCTTGCT
TTAAATTGAAGGCAACTGCGTGGAAGGATGTCAAGCGCTACTTTTTGAAC
CTTGACAAGAAATTCTTTGTCGACCTCAAGACGTACAACCGCGAAGTCTC
TCCAACCATACTGTTGGCATGCGGCAATGGCGATGGCGGAGGTGATTACT
TTGGTGAGGACAAAGAGCTCGTAGGATCATGGGCAGGAGATCATGTCGGT
GTGGCTGACAAAGTACCAGAAGATGGGGATTGGACTGAACTCAAACCTTG
CTTT
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