mRNA_M-pyrifera_M_contig70503.16829.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70503.16829.1
Unique NamemRNA_M-pyrifera_M_contig70503.16829.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70503.16829.1 vs. uniprot
Match: D8LTA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA1_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.070e-11
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 AVSLIKTVVERGPWMEAMGEGLRRATAGDFTGSLLLYSRLAEV 129
            AVSL K VVERGPWM+ M   LRRATAGD+ G+L+LYSRLAEV
Sbjct:  251 AVSLFKNVVERGPWMDGMQAALRRATAGDYGGALVLYSRLAEV 293
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BLAST of mRNA_M-pyrifera_M_contig70503.16829.1 vs. uniprot
Match: A0A6H5JP59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP59_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.470e-11
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 AVSLIKTVVERGPWMEAMGEGLRRATAGDFTGSLLLYSRLAEV 129
            AVSL K VVERGPWM+ M   LRRATAGD+ G+L+LYSRLAE+
Sbjct:  428 AVSLFKNVVERGPWMDGMQAALRRATAGDYGGALVLYSRLAEI 470
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70503.16829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTA1_ECTSI1.070e-1174.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP59_9PHAE1.470e-1172.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70503contigM-pyrifera_M_contig70503:89..217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog2880.D8LTA1
KEGG koko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-12_005790.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.669124-CDS-M-pyrifera_M_contig70503:88..2171622816597.669124-CDS-M-pyrifera_M_contig70503:88..217Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70503 89..217 -
1692278068.6751075-CDS-M-pyrifera_M_contig70503:88..2171692278068.6751075-CDS-M-pyrifera_M_contig70503:88..217Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70503 89..217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70503.16829.1prot_M-pyrifera_M_contig70503.16829.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70503 89..217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70503.16829.1

>prot_M-pyrifera_M_contig70503.16829.1 ID=prot_M-pyrifera_M_contig70503.16829.1|Name=mRNA_M-pyrifera_M_contig70503.16829.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
AVSLIKTVVERGPWMEAMGEGLRRATAGDFTGSLLLYSRLAEV
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mRNA from alignment at M-pyrifera_M_contig70503:89..217-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70503.16829.1 ID=mRNA_M-pyrifera_M_contig70503.16829.1|Name=mRNA_M-pyrifera_M_contig70503.16829.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig70503:89..217- (Macrocystis pyrifera P11B4 male)
GCCGTCTCCCTGATAAAGACCGTGGTGGAGAGGGGTCCGTGGATGGAAGC
GATGGGCGAGGGGTTGCGCCGAGCGACGGCCGGTGACTTCACGGGCTCGT
TGCTTCTCTACTCGAGGTTGGCTGAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70503:89..217-

>mRNA_M-pyrifera_M_contig70503.16829.1 ID=mRNA_M-pyrifera_M_contig70503.16829.1|Name=mRNA_M-pyrifera_M_contig70503.16829.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig70503:89..217- (Macrocystis pyrifera P11B4 male)
GCCGTCTCCCTGATAAAGACCGTGGTGGAGAGGGGTCCGTGGATGGAAGC
GATGGGCGAGGGGTTGCGCCGAGCGACGGCCGGTGACTTCACGGGCTCGT
TGCTTCTCTACTCGAGGTTGGCTGAGGTGGCCGTCTCCCTGATAAAGACC
GTGGTGGAGAGGGGTCCGTGGATGGAAGCGATGGGCGAGGGGTTGCGCCG
AGCGACGGCCGGTGACTTCACGGGCTCGTTGCTTCTCTACTCGAGGTTGG
CTGAGGTG
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