mRNA_M-pyrifera_M_contig7050.16827.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7050.16827.1
Unique NamemRNA_M-pyrifera_M_contig7050.16827.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7050.16827.1 vs. uniprot
Match: A0A6H5KY58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY58_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.110e-18
Identity = 55/149 (36.91%), Postives = 77/149 (51.68%), Query Frame = 1
Query:    1 DYHKNMDVDMFMAWIERRLVPMFNAM--YPGKKMILILDNEPYHHGMADDWKSPLQASKTANLKLCREVDGVNSVSVPR---DGHIV--TFALPAE------------GKGEKDLGD------LLFTPPYCPALQPMELFWAHGKNYVA 372
            DYH  M   M M W+E RL P +NA+  + GK+MIL+L+N  YHHG   + K P   +K  N+ L  +  G  S+ V R   +  +V   F +P E            G    ++        L++TPPY P+ QP+ELFW HGK YV+
Sbjct:   81 DYHAVMTDLMLMEWLEHRLSPAYNAIPEFEGKQMILVLENASYHHGFDAEVKEPETNTKKYNVDLLHKFGG-KSIRVRRKEGEQGVVEYNFEVPTEPGSSFPARNREGGVSRAEVATATRGWVLIWTPPYMPSFQPIELFWQHGKQYVS 228          
BLAST of mRNA_M-pyrifera_M_contig7050.16827.1 vs. uniprot
Match: A0A821ZLK4_9BILA (Hypothetical protein n=8 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821ZLK4_9BILA)

HSP 1 Score: 85.1 bits (209), Expect = 9.110e-17
Identity = 60/173 (34.68%), Postives = 76/173 (43.93%), Query Frame = 1
Query:    1 DYHKNMDVDMFMAWIERRLVPMFNAMYP-GKKMILILDNEPYHHGMADDWKSPLQASKT--ANLKLCREVDGVNSVSVPRDGHIVTFALPAEGKGEKDLGD--------------------------------------------LLFTPPYCPALQPMELFWAHGKNYVAEK 378
            DYH NMD   F  W+ + L P F A Y   K+MIL+LDN PYH    +D+ +    SKT   NL L ++V     V+V RDGH   F    E K    LG                                             L+FTPPYCP +QP+EL WA+ K YVA++
Sbjct:  315 DYHCNMDGHNFRLWVNKFLFPAFEAKYGLNKRMILVLDNAPYHKEQGNDYANIKLMSKTDMINLFLSKKV---RKVTVIRDGHTKEFKA-NEWKLNGPLGPYKEELKIYIQSWIKQYPELQKVLIEKLFEEKSLAAKVNMPNFHYLIFTPPYCPQVQPIELVWAYVKGYVAKQ 483          
BLAST of mRNA_M-pyrifera_M_contig7050.16827.1 vs. uniprot
Match: A0A6H5JG34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG34_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 9.810e-15
Identity = 45/130 (34.62%), Postives = 62/130 (47.69%), Query Frame = 1
Query:    1 DYHKNMDVDMFMAWIERRLVPMFNAMYPGKKMILILDNEPYHH--GMADDWKSPLQASKTANLKLCREVDGVNSVSVPRDGHIVTFALPAEGKGEKDLGD----LLFTPPYCPALQPMELFWAHGKNYVA 372
            D+   M   MFM W++ RL P F+A +  KKM L+LD+   H    +  + + P       N      V      SV R      F    E K E  + +    L++TPPY P  QP+ELFW HGK+YV+
Sbjct:  426 DFQSAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDSLMPHTTTALTRNSRCPKPTGSLPNANRKNGVSKEEIASVTRTYFKKNFPKKLEEKAETYMREQGWRLIWTPPYMPTFQPIELFWQHGKHYVS 555          
BLAST of mRNA_M-pyrifera_M_contig7050.16827.1 vs. uniprot
Match: A0A822EKM9_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A822EKM9_9BILA)

HSP 1 Score: 75.1 bits (183), Expect = 2.930e-13
Identity = 54/179 (30.17%), Postives = 74/179 (41.34%), Query Frame = 1
Query:    1 DYHKNMDVDMFMAWIERRLVPMFNAMYPGKK-MILILDNEPYHHGMADDWKSPLQASKTANLKLCREVD--------GVNSVSVPRDGHIVTFALPAEGKGEKDLGD--------------------------------------------LLFTPPYCPALQPMELFWAHGKNYVAEK 378
            DYH NM+   F  WI + L P F A Y  KK MIL+LDN PYH    DD+          N+KL  ++D        GV ++++  +G+   F    E K    LG                                             L++ PPYCP +QP+EL WA+ K YVA++
Sbjct:  323 DYHSNMNGYNFRLWINQHLFPAFQAKYGRKKRMILVLDNAPYHKERGDDY---------VNIKLMSKIDMIDLLVSKGVQNITIIPNGYPKEFQA-NEWKFNGPLGPYKKELQLYMESWIKQYPELQKTLLENLFVEKSLHVKANMPDFHYLIYIPPYCPQVQPIELVWAYVKAYVAKQ 491          
BLAST of mRNA_M-pyrifera_M_contig7050.16827.1 vs. uniprot
Match: A0A817F975_9BILA (Hypothetical protein n=10 Tax=unclassified Rotaria TaxID=2631648 RepID=A0A817F975_9BILA)

HSP 1 Score: 74.3 bits (181), Expect = 5.450e-13
Identity = 52/171 (30.41%), Postives = 74/171 (43.27%), Query Frame = 1
Query:    1 DYHKNMDVDMFMAWIERRLVPMFNAMYPGKK-MILILDNEPYHHGMADDWKSPLQASKTANLKLCREVDGVNSVSVPRDGHIVTFALPAEGKGEKDLGD--------------------------------------------LLFTPPYCPALQPMELFWAHGKNYVAEK 378
            DYH NMD   F  W  ++L   F A Y  KK MIL+LDN PYH    DD+ +    SK+  + L   +  V ++++ R+G+   F    E K    +G                                             L++TPPYCP +QP+EL WA+ K YVA++
Sbjct:  320 DYHSNMDGHNFRLWSNQQLFSAFQAKYGRKKRMILMLDNAPYHKERGDDYVNIKLMSKSDMIDLL-VLKRVKNITIIRNGYPKEFQA-NEWKFNGPIGPYKKELQVYMESWIKQYPELQKTLLEKLFIEKSLDLKVNMPDFHYLIYTPPYCPQVQPIELVWAYVKTYVAKE 488          
BLAST of mRNA_M-pyrifera_M_contig7050.16827.1 vs. uniprot
Match: A0A7S4J909_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J909_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.130e-12
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1
Query:    1 DYHKNMDVDMFMAWIERRLVPMFNAMYPGKKMILILDNEPYHH 129
            DYH NM+ +MFM W+++RLVP F   YPGKKM +++DN PYHH
Sbjct:   61 DYHSNMNSEMFMKWVQQRLVPAFEKKYPGKKMAVVMDNTPYHH 103          
BLAST of mRNA_M-pyrifera_M_contig7050.16827.1 vs. uniprot
Match: A0A7S2FDL8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FDL8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.780e-9
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1
Query:    1 DYHKNMDVDMFMAWIERRLVPMFNAMYPGKKMILILDNEPYHH 129
            DYH  M+ + FM W++++L+P F A +P KKMIL+LDN PYHH
Sbjct:  271 DYHDMMNNENFMEWVDKKLIPTFKARFPSKKMILVLDNAPYHH 313          
BLAST of mRNA_M-pyrifera_M_contig7050.16827.1 vs. uniprot
Match: A0A6H5L7T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.170e-9
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 1
Query:    1 DYHKNMDVDMFMAWIERRLVPMFNAMYPGKKMILI--------LDNEPYHHGMADDWKSPLQAS-KTANLKLCREVDGVNSVSVPRDGHIVTFALPAEGKGEKDLGDLLFTPPYCPALQPMELFWAHGKNYVA 372
            DYH  M   MFM W++ RL P F+A       +L         +  E        +++ P Q S   AN K        N VS        T+        EK LG L++TPPY P  QP+ELFW HGK+YV+
Sbjct:  208 DYHNTMMDGMFMQWLKHRLTPAFDAQKKYNVELLRKYGCTLSKVTRESEGKAAEYNFEVPAQGSLPKANRK--------NGVSKEEIDFAETYMR------EKGLG-LIWTPPYMPTFQPIELFWQHGKHYVS 325          
BLAST of mRNA_M-pyrifera_M_contig7050.16827.1 vs. uniprot
Match: UPI00077DD376 (uncharacterized protein LOC103312768 isoform X1 n=1 Tax=Tribolium castaneum TaxID=7070 RepID=UPI00077DD376)

HSP 1 Score: 58.5 bits (140), Expect = 1.230e-7
Identity = 42/132 (31.82%), Postives = 66/132 (50.00%), Query Frame = 1
Query:    1 DYHKNMDVDMFMAWIERRLVPMFNAMYPGKKMILILDNEPYHHGMADDWKSPLQASKTANLKLCREVDGV----NSVSVPRDGHIVTFALPAE-----GKGEKDLGDLLFT-PPYCPALQPMELFWAHGKNY 366
            DYHKNM+ ++F AW++ +L+P   A+ P K  I++LDN PYH    +  K+P+ +SK  N+     ++ +    N++       I       E      K  K+ G ++F  PPY     P+EL W   K Y
Sbjct:   58 DYHKNMNAEIFTAWVKNQLLPAL-ALLP-KPCIIVLDNAPYHSVQVN--KTPVASSKKGNMIRWLNMNNIEYPPNALKKTLWDKIREHKANLEKTYIIDKLIKENGHVVFRLPPYNCQYNPIELAWGCLKTY 185          
BLAST of mRNA_M-pyrifera_M_contig7050.16827.1 vs. uniprot
Match: A0A815A7T4_9BILA (Hypothetical protein n=7 Tax=Rotaria sordida TaxID=392033 RepID=A0A815A7T4_9BILA)

HSP 1 Score: 54.7 bits (130), Expect = 4.020e-6
Identity = 32/85 (37.65%), Postives = 45/85 (52.94%), Query Frame = 1
Query:    1 DYHKNMDVDMFMAWIERRLVPMFNAMYPG-KKMILILDNEPYHHGMADDWKSPLQASKTANLKLCREVDGVNSVSVPRDGHIVTF 252
            D+H NMD   F  W+E+ L P F A Y   K+MILILDN PYH  +   + +    SK   + L    + V+S+ + R+G    F
Sbjct:  313 DFHSNMDGYNFRLWVEQYLFPAFEAKYGHQKRMILILDNAPYHKELGKGYINVKSMSKIDMINLLISKN-VHSIVILRNGQAKKF 396          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7050.16827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KY58_9PHAE3.110e-1836.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A821ZLK4_9BILA9.110e-1734.68Hypothetical protein n=8 Tax=Rotaria sp. Silwood1 ... [more]
A0A6H5JG34_9PHAE9.810e-1534.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A822EKM9_9BILA2.930e-1330.17Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
A0A817F975_9BILA5.450e-1330.41Hypothetical protein n=10 Tax=unclassified Rotaria... [more]
A0A7S4J909_9STRA1.130e-1260.47Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2FDL8_9STRA1.780e-955.81Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A6H5L7T4_9PHAE4.170e-934.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00077DD3761.230e-731.82uncharacterized protein LOC103312768 isoform X1 n=... [more]
A0A815A7T4_9BILA4.020e-637.65Hypothetical protein n=7 Tax=Rotaria sordida TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7050contigM-pyrifera_M_contig7050:4397..4888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7050.16827.1prot_M-pyrifera_M_contig7050.16827.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7050 4397..4873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.6142037-CDS-M-pyrifera_M_contig7050:4396..44991622816597.6142037-CDS-M-pyrifera_M_contig7050:4396..4499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7050 4397..4499 -
1692278068.62548-CDS-M-pyrifera_M_contig7050:4396..44991692278068.62548-CDS-M-pyrifera_M_contig7050:4396..4499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7050 4397..4499 -
1622816597.6246254-CDS-M-pyrifera_M_contig7050:4613..48731622816597.6246254-CDS-M-pyrifera_M_contig7050:4613..4873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7050 4614..4873 -
1692278068.639112-CDS-M-pyrifera_M_contig7050:4613..48731692278068.639112-CDS-M-pyrifera_M_contig7050:4613..4873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7050 4614..4873 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.6349092-UTR-M-pyrifera_M_contig7050:4873..48881622816597.6349092-UTR-M-pyrifera_M_contig7050:4873..4888Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7050 4874..4888 -
1692278068.6578288-UTR-M-pyrifera_M_contig7050:4873..48881692278068.6578288-UTR-M-pyrifera_M_contig7050:4873..4888Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7050 4874..4888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7050.16827.1

>prot_M-pyrifera_M_contig7050.16827.1 ID=prot_M-pyrifera_M_contig7050.16827.1|Name=mRNA_M-pyrifera_M_contig7050.16827.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MDVDMFMAWIERRLVPMFNAMYPGKKMILILDNEPYHHGMADDWKSPLQA
SKTANLKLCREVDGVNSVSVPRDGHIVTFALPAEGKGEKDLGDLLFTPPY
CPALQPMELFWAHGKNYVAEK
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mRNA from alignment at M-pyrifera_M_contig7050:4397..4888-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7050.16827.1 ID=mRNA_M-pyrifera_M_contig7050.16827.1|Name=mRNA_M-pyrifera_M_contig7050.16827.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig7050:4397..4888- (Macrocystis pyrifera P11B4 male)
GACTATCACAAGAACATGGACGTCGACATGTTCATGGCGTGGATCGAAAG GCGTCTCGTGCCCATGTTCAATGCAATGTACCCCGGCAAAAAAATGATTT TGATCTTGGACAATGAGCCATATCACCATGGAATGGCAGATGACTGGAAG AGCCCGCTGCAAGCAAGCAAGACGGCCAATCTGAAACTTTGTCGAGAAGT GGACGGGGTAAATAGCGTCAGCGTGCCGCGGGATGGACATATAGTCACGT TTGCACTTCCAGCGGAAGGGAAGGGGTTTGACCAATTCCCTGCGGGTCCA AGCGTGAAGGAGCTGCAGCGCGCCACCTACCACGCCCTTCAGGACAAAGC CCCTCAAAAGCTAGAGACGAGAGCAGAGCGCTACTTCAGGGAGAAGGATC TTGGAGACCTGCTTTTCACGCCCCCGTACTGTCCCGCTCTTCAGCCCATG GAGCTGTTCTGGGCTCACGGCAAAAACTACGTCGCGGAAAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7050:4397..4888-

>mRNA_M-pyrifera_M_contig7050.16827.1 ID=mRNA_M-pyrifera_M_contig7050.16827.1|Name=mRNA_M-pyrifera_M_contig7050.16827.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig7050:4397..4888- (Macrocystis pyrifera P11B4 male)
ATGGACGTCGACATGTTCATGGCGTGGATCGAAAGGCGTCTCGTGCCCAT
GTTCAATGCAATGTACCCCGGCAAAAAAATGATTTTGATCTTGGACAATG
AGCCATATCACCATGGAATGGCAGATGACTGGAAGAGCCCGCTGCAAGCA
AGCAAGACGGCCAATCTGAAACTTTGTCGAGAAGTGGACGGGGTAAATAG
CGTCAGCGTGCCGCGGGATGGACATATAGTCACGTTTGCACTTCCAGCGG
AAGGGAAGGGATGGACGTCGACATGTTCATGGCGTGGATCGAAAGGCGTC
TCGTGCCCATGTTCAATGCAATGTACCCCGGCAAAAAAATGATTTTGATC
TTGGACAATGAGCCATATCACCATGGAATGGCAGATGACTGGAAGAGCCC
GCTGCAAGCAAGCAAGACGGCCAATCTGAAACTTTGTCGAGAAGTGGACG
GGGTAAATAGCGTCAGCGTGCCGCGGGATGGACATATAGTCACGTTTGCA
CTTCCAGCGGAAGGGAAGGGGGAGAAGGATCTTGGAGACCTGCTTTTCAC
GCCCCCGTACTGTCCCGCTCTTCAGCCCATGGAGCTGTTCTGGGCTCACG
GCAAAAACTACGTCGCGGAAAAAGGAGAAGGATCTTGGAGACCTGCTTTT
CACGCCCCCGTACTGTCCCGCTCTTCAGCCCATGGAGCTGTTCTGGGCTC
ACGGCAAAAACTACGTCGCGGAAAAA
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