mRNA_M-pyrifera_M_contig7049.16826.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7049.16826.1 vs. uniprot
Match: D7G286_ECTSI (Centrin-1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G286_ECTSI) HSP 1 Score: 367 bits (942), Expect = 1.500e-108 Identity = 257/565 (45.49%), Postives = 314/565 (55.58%), Query Frame = 1 Query: 1 RDLSTAPAWIGSPNLSGVDLLQTQTFAVDKKAGPRKRQWHEDWRELVIGASPYSRAVARKMAKRRARAERGTSTPADAHAELEEKVSACLFGILPEEYCRDAP--LQATKKEGVGRGGGGDLLVKTGGADKPLTKTRCDSRGSSQRE-RYACMAEDLQHERSESRTLEQP--------IIRKCLIRKCLPIPSPFPPTRGGEQTPRQWRSQPAPNRQRGADGAGEGSVFKSSGGDNERSRRRLAAFLSKNAVAGQGGVGADARSSTSPAHEPGSPADAQKWGNRCAALVEQAFGLGGDERASTAPSQSMVANFIGLLEGSLGRGLWADPVASELARPLDAILAYLPPEGARLHEDSAHRFRPLGRSSSSQLSPSVDVTGGRNIASSPPGDVDGNPREIGLTKAAAXXXXXXXXXXAARQPTTAPAAASSDSKLPTKQAFSL-TATMENGAVDEAPRAAWLGRVAAVLEARGDRDEAVRLYGEASAVLTRAVGGREGSNAI---TGTGTSFNRQNGAVGLEEGSRGVGVVGLGAGSGGGSDLFPYSARAHHLASMIERAYRRHFER 1650 RDLSTAPAWIG P LSGVDL QTQTF VDKKA PRKR+W EDWRELVIGASPY++A A+ A RRARAERG ST ADA AE+EEKVS L G++PEE+CRDAP ++ + + + V G + D GS +R + A + R S +L P ++ ++ LP + PP + +Q + P RQRG + ERSRRRLAAFL E G P D + FGLGGD T PS+SM ANF+GLLEGSLG G+W DPVAS+LARPL+A+LAYLPPEGARL ++S RF P G S ++ + D A+SP DG ++ A R PTT AA S P A SL T TME G +EAPRA WLG+VAAV+EARGDRDEAVRLYGEA+A LT G REG++ I G+G + + A G ++ +G G G+G G DLFPYSARAH+LAS+IER YRRHF R Sbjct: 37 RDLSTAPAWIGFPGLSGVDLTQTQTFPVDKKARPRKRRWGEDWRELVIGASPYNKAAAKARAGRRARAERGASTAADARAEIEEKVSTSLLGVVPEEFCRDAPPAVEPSSSSSSLKA----VTVAAGARATNSAEDAADGAGSGRRPIKIAVESSATTGSRDVSSSLAAPAATGGGDCVVAGAAHQRGLPTKASGPP-----YSDQQQQHASRPKRQRGXXXXXXXXXXXERR-NGERSRRRLAAFLEDQXXXXXXXXXXXXXXXXXXRAEEGQPCDGSNSAVTAGRKDQTFFGLGGDALEPTPPSESMTANFVGLLEGSLGLGVWTDPVASQLARPLNAVLAYLPPEGARLFDESGRRFTPPGGSHEAEANLPPDNEPSAAHATSP----DGRKKKTAXXXXXTTSGIKAAPTGAGRGPTTQGAACIS---APGTAASSLLTVTMERGTAEEAPRAVWLGQVAAVMEARGDRDEAVRLYGEAAAELT---GKREGASRIGSRDGSGGTASPCPPAAGKGRSAQ-LGGGDRGVGAGAGPDLFPYSARAHYLASIIERTYRRHFLR 580 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7049.16826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7049.16826.1 >prot_M-pyrifera_M_contig7049.16826.1 ID=prot_M-pyrifera_M_contig7049.16826.1|Name=mRNA_M-pyrifera_M_contig7049.16826.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=551bp RDLSTAPAWIGSPNLSGVDLLQTQTFAVDKKAGPRKRQWHEDWRELVIGAback to top mRNA from alignment at M-pyrifera_M_contig7049:717..7091- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7049.16826.1 ID=mRNA_M-pyrifera_M_contig7049.16826.1|Name=mRNA_M-pyrifera_M_contig7049.16826.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6375bp|location=Sequence derived from alignment at M-pyrifera_M_contig7049:717..7091- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7049:717..7091- >mRNA_M-pyrifera_M_contig7049.16826.1 ID=mRNA_M-pyrifera_M_contig7049.16826.1|Name=mRNA_M-pyrifera_M_contig7049.16826.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3306bp|location=Sequence derived from alignment at M-pyrifera_M_contig7049:717..7091- (Macrocystis pyrifera P11B4 male)back to top |