mRNA_M-pyrifera_M_contig70483.16824.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70483.16824.1
Unique NamemRNA_M-pyrifera_M_contig70483.16824.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70483.16824.1 vs. uniprot
Match: D7FP08_ECTSI (C-CAP/cofactor C-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP08_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 9.300e-8
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 1
Query:    1 FSLPSRFAAAVSAKRKAVRTLKRQLRSPDLTEEQRAQLDKAINAYFREWLVNTGNLRQVADLVQL 195
            F LPS +AA +  +  AV  L + +   DLT  Q  +L++ I   F EWLV TGNLRQV DLV +
Sbjct:  313 FGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRGRFTEWLVATGNLRQVLDLVSV 377          
BLAST of mRNA_M-pyrifera_M_contig70483.16824.1 vs. uniprot
Match: A0A7S0KJ08_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KJ08_MICPS)

HSP 1 Score: 54.3 bits (129), Expect = 1.490e-7
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    1 FSLPSRFAAAVSAKRKAVRTLKRQLRSPDLTEEQRAQLDKAINAYFREWLVNTGNLRQVADLVQL 195
            F++P  +  A+ AK K V +L+  LR   L E  R +L   I A+F+EWL+ +G++RQV DL ++
Sbjct:   79 FAVPPEYVRALDAKVKTVASLRSALRDAGLDERSRRELQATIQAFFKEWLMTSGSMRQVYDLARI 143          
BLAST of mRNA_M-pyrifera_M_contig70483.16824.1 vs. uniprot
Match: C1EER5_MICCC (C-CAP/cofactor C-like domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EER5_MICCC)

HSP 1 Score: 55.8 bits (133), Expect = 1.770e-7
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 FSLPSRFAAAVSAKRKAVRTLKRQLRSPDLTEEQRAQLDKAINAYFREWLVNTGNLRQVADLVQL 195
            F++P  +  A+ AK KAV +L+  LR   L E  R +L   I A+F+EWL+ +G++RQV DL ++
Sbjct:  566 FAVPPEYVRALDAKVKAVASLRSALRDAGLDERSRRELQATIQAFFKEWLMTSGSMRQVYDLARI 630          
BLAST of mRNA_M-pyrifera_M_contig70483.16824.1 vs. uniprot
Match: A0A6U0SFG5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0SFG5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.300e-7
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 FSLPSRFAAAVSAKRKAVRTLKRQLRSPDLTEEQRAQLDKAINAYFREWLVNTGNLRQVADLVQL 195
            F LP+ +   V  K   +RTL+  +++ DLT EQ+ +L++ +N  FR+WLV +GNLRQV DLV +
Sbjct:  497 FRLPAEYERRVLMKVDRIRTLQHMIQN-DLTPEQQWKLEEELNQLFRDWLVTSGNLRQVLDLVHM 560          
BLAST of mRNA_M-pyrifera_M_contig70483.16824.1 vs. uniprot
Match: A0A1Y1HY35_KLENI (TBCC domain-containing protein 1 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HY35_KLENI)

HSP 1 Score: 54.7 bits (130), Expect = 4.510e-7
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 FSLPSRFAAAVSAKRKAVRTLKRQLRSPDLTEEQRAQLDKAINAYFREWLVNTGNLRQVADLVQL 195
            F LP  +  A+  K K V TL++ L++  L E ++ +L   I A+F+EWL+ +GN+RQV DL +L
Sbjct:  511 FVLPKAYLQALQQKTKTVETLRQTLKTAVLEENKKKELTNVIQAHFKEWLLASGNIRQVYDLARL 575          
BLAST of mRNA_M-pyrifera_M_contig70483.16824.1 vs. uniprot
Match: A0A7S1X1Q1_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X1Q1_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 5.970e-7
Identity = 25/65 (38.46%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 FSLPSRFAAAVSAKRKAVRTLKRQLRSPDLTEEQRAQLDKAINAYFREWLVNTGNLRQVADLVQL 195
            F LP  +  A++ K + V  L++ ++S  L E ++ +L   I A+F+EWL+N+GN+RQ+ DL +L
Sbjct:  102 FPLPPTYELALNKKVQGVADLRQAVKSAVLEEPRKKELQAVIQAHFKEWLINSGNMRQIYDLARL 166          
BLAST of mRNA_M-pyrifera_M_contig70483.16824.1 vs. uniprot
Match: C1MYL4_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MYL4_MICPC)

HSP 1 Score: 53.9 bits (128), Expect = 8.390e-7
Identity = 24/65 (36.92%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 FSLPSRFAAAVSAKRKAVRTLKRQLRSPDLTEEQRAQLDKAINAYFREWLVNTGNLRQVADLVQL 195
            FS+P  +  A+  K ++V +L+  +R   L ++Q+ +L   I AYF+EWL+ +G++RQV DL ++
Sbjct:  422 FSVPEAYVRALDQKVRSVASLRAAMRDAGLDDDQKRELQATIQAYFKEWLLTSGSMRQVYDLARI 486          
BLAST of mRNA_M-pyrifera_M_contig70483.16824.1 vs. uniprot
Match: A0A061S8L0_9CHLO (TBCC domain-containing protein 1 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S8L0_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 1.160e-6
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 FSLPSRFAAAVSAKRKAVRTLKRQLRSPDLTEEQRAQLDKAINAYFREWLVNTGNLRQVADLVQL 195
            F LP  + AA+  K +AV  L+ +++S  L E ++  L   I A+F+EWLV +GN+RQ+ DL +L
Sbjct:  525 FPLPEEYDAALKKKVEAVADLRSEVKSAVLEEPRKRDLQAVIQAHFKEWLVASGNMRQIYDLARL 589          
BLAST of mRNA_M-pyrifera_M_contig70483.16824.1 vs. uniprot
Match: A0A7S3V669_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V669_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.170e-6
Identity = 27/65 (41.54%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 FSLPSRFAAAVSAKRKAVRTLKRQLRSPDLTEEQRAQLDKAINAYFREWLVNTGNLRQVADLVQL 195
            F LP+ +      K   +++L++ +++ DL +EQ+ +L++ +N+ FREWLV++GNLRQV DLV L
Sbjct:  907 FRLPTEYERRALVKADRMKSLQQAIQT-DLDQEQQVKLEEELNSGFREWLVSSGNLRQVLDLVHL 970          
BLAST of mRNA_M-pyrifera_M_contig70483.16824.1 vs. uniprot
Match: A0A7S0NAY6_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0NAY6_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 2.570e-6
Identity = 24/65 (36.92%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 FSLPSRFAAAVSAKRKAVRTLKRQLRSPDLTEEQRAQLDKAINAYFREWLVNTGNLRQVADLVQL 195
            F++P +++AA+  K +AV  +++ ++   L    +  L   I AYF+EWLV +GN+RQV DL ++
Sbjct:  206 FTMPQQYSAALEQKVQAVEDMRKNVKEAGLDGANKRDLQTVIQAYFKEWLVVSGNMRQVYDLARM 270          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70483.16824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP08_ECTSI9.300e-846.15C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A7S0KJ08_MICPS1.490e-740.00Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
C1EER5_MICCC1.770e-741.54C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A6U0SFG5_9STRA3.300e-744.62Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1Y1HY35_KLENI4.510e-741.54TBCC domain-containing protein 1 n=1 Tax=Klebsormi... [more]
A0A7S1X1Q1_9CHLO5.970e-738.46Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
C1MYL4_MICPC8.390e-736.92Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A061S8L0_9CHLO1.160e-641.54TBCC domain-containing protein 1 n=1 Tax=Tetraselm... [more]
A0A7S3V669_9STRA1.170e-641.54Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0NAY6_9CHLO2.570e-636.92Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70483contigM-pyrifera_M_contig70483:981..1175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.3445697-CDS-M-pyrifera_M_contig70483:980..11751622816597.3445697-CDS-M-pyrifera_M_contig70483:980..1175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70483 981..1175 -
1692278068.467283-CDS-M-pyrifera_M_contig70483:980..11751692278068.467283-CDS-M-pyrifera_M_contig70483:980..1175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70483 981..1175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70483.16824.1prot_M-pyrifera_M_contig70483.16824.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70483 981..1175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70483.16824.1

>prot_M-pyrifera_M_contig70483.16824.1 ID=prot_M-pyrifera_M_contig70483.16824.1|Name=mRNA_M-pyrifera_M_contig70483.16824.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
FSLPSRFAAAVSAKRKAVRTLKRQLRSPDLTEEQRAQLDKAINAYFREWL
VNTGNLRQVADLVQL
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mRNA from alignment at M-pyrifera_M_contig70483:981..1175-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70483.16824.1 ID=mRNA_M-pyrifera_M_contig70483.16824.1|Name=mRNA_M-pyrifera_M_contig70483.16824.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig70483:981..1175- (Macrocystis pyrifera P11B4 male)
TTTTCTCTGCCTTCTCGCTTTGCTGCAGCTGTGTCAGCCAAGCGGAAGGC AGTGCGGACGTTGAAGAGACAGCTCCGATCCCCGGACCTCACCGAAGAAC AGAGAGCACAGCTCGACAAGGCGATCAACGCATACTTTAGAGAATGGCTT GTCAACACTGGAAACCTCAGACAAGTGGCGGACCTCGTCCAGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70483:981..1175-

>mRNA_M-pyrifera_M_contig70483.16824.1 ID=mRNA_M-pyrifera_M_contig70483.16824.1|Name=mRNA_M-pyrifera_M_contig70483.16824.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig70483:981..1175- (Macrocystis pyrifera P11B4 male)
TTTTCTCTGCCTTCTCGCTTTGCTGCAGCTGTGTCAGCCAAGCGGAAGGC
AGTGCGGACGTTGAAGAGACAGCTCCGATCCCCGGACCTCACCGAAGAAC
AGAGAGCACAGCTCGACAAGGCGATCAACGCATACTTTAGAGAATGGCTT
GTCAACACTGGAAACCTCAGACAAGTGGCGGACCTCGTCCAGCTCTTTTC
TCTGCCTTCTCGCTTTGCTGCAGCTGTGTCAGCCAAGCGGAAGGCAGTGC
GGACGTTGAAGAGACAGCTCCGATCCCCGGACCTCACCGAAGAACAGAGA
GCACAGCTCGACAAGGCGATCAACGCATACTTTAGAGAATGGCTTGTCAA
CACTGGAAACCTCAGACAAGTGGCGGACCTCGTCCAGCTC
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