mRNA_M-pyrifera_M_contig70481.16823.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70481.16823.1
Unique NamemRNA_M-pyrifera_M_contig70481.16823.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70481.16823.1 vs. uniprot
Match: A0A5A8E7D6_CAFRO (Uncharacterized protein n=6 Tax=Sar TaxID=2698737 RepID=A0A5A8E7D6_CAFRO)

HSP 1 Score: 136 bits (342), Expect = 3.100e-35
Identity = 73/136 (53.68%), Postives = 94/136 (69.12%), Query Frame = 1 
Query:   25 ETNYTCEVSKSTDGGKTWTQLYWNEGAFYPNGIAAWDPDHACFVAEADSGSAAGTHIWCTDD-GKTFNQTYTNPGAANSLMDIAIVPPASNGEAWAVGGALTS-SPSASFYHTTDFGKTWTAANTISGSYASAVDC 426
            ET +  ++S STD GKTW  ++ N+G FY NGIA  D ++ CFV EAD+G+AAG  I CT+D G  +N+T   PG  NSL+DI     A  GE WAVGG L+S   +A+FYH+T+ G +WT  +TISGSYASAVDC
Sbjct:  245 ETIFQAQISLSTDAGKTWNSVFENKGDFYANGIACIDDNNCCFVGEADAGAAAGARIHCTNDAGANWNRTLFLPGPQNSLLDITATGTA--GEYWAVGGTLSSLDANATFYHSTNSGNSWTLDSTISGSYASAVDC 378
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BLAST of mRNA_M-pyrifera_M_contig70481.16823.1 vs. uniprot
Match: A0A7S1C4R2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4R2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.070e-12
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   16 GAGETNYTC---EVSKSTDGGKTWTQLYWNEGA--FYPNGIAAWDPDHACFVAEADSGSAAGTHIWCTDDGKTFNQTYTNPGAANSLM 264
            GAG+TNYT     ++KS DGGKTWT  +  +G   +Y NGI  +D  H   VAEADSG+ AG+ I+ T +GK + Q     GAA+S M
Sbjct:  222 GAGKTNYTQYTGAIAKSEDGGKTWTTQFKVQGVNEYYFNGIDCYDETHCVAVAEADSGTGAGSRIFQTTNGKDWKQVVFTAGAAHSPM 309
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BLAST of mRNA_M-pyrifera_M_contig70481.16823.1 vs. uniprot
Match: A0A7S3HBN6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBN6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 9.700e-9
Identity = 44/118 (37.29%), Postives = 61/118 (51.69%), Query Frame = 1 
Query:   28 TNYTCEVSKSTDGGKTWTQLYWNEGAFYPNGIAAWDPDHACFVAEADSGSAAGTHIWCTDDGKTFNQTYTNPGAANSLMDIAIVPPASNGEAWAVGGALTS-SPSASFYHTTDFGKTW 378
            T Y   +SK+TDGG TWT+++  E   Y N I  +D +    VAE + G+ A   +  ++ G T+    T P  A SLM   ++   S  EAW  GG     S +  +YHTTD G TW
Sbjct:  226 TGYPGAISKTTDGGATWTKVFDTESNGYFNQIHCYDTETCVAVAENEEGAFA---VSTSNGGATWKNVLTAPAGA-SLMGARML---STTEAWVSGGGQDGRSLNGYYYHTTDGGNTW 336
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70481.16823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5A8E7D6_CAFRO3.100e-3553.68Uncharacterized protein n=6 Tax=Sar TaxID=2698737 ... [more]
A0A7S1C4R2_9STRA1.070e-1247.73Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3HBN6_9STRA9.700e-937.29Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70481contigM-pyrifera_M_contig70481:87..883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score104.8
Seed ortholog evalue4.1e-20
Seed eggNOG ortholog81824.XP_001747839.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2ET47@1,2SVIB@2759,3APKS@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons3
Model size507
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70481.16823.1prot_M-pyrifera_M_contig70481.16823.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70481 87..883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.2838295-CDS-M-pyrifera_M_contig70481:86..2421622816597.2838295-CDS-M-pyrifera_M_contig70481:86..242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70481 87..242 -
1692278068.4348779-CDS-M-pyrifera_M_contig70481:86..2421692278068.4348779-CDS-M-pyrifera_M_contig70481:86..242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70481 87..242 -
1622816597.298239-CDS-M-pyrifera_M_contig70481:371..4921622816597.298239-CDS-M-pyrifera_M_contig70481:371..492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70481 372..492 -
1692278068.4468703-CDS-M-pyrifera_M_contig70481:371..4921692278068.4468703-CDS-M-pyrifera_M_contig70481:371..492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70481 372..492 -
1622816597.3121114-CDS-M-pyrifera_M_contig70481:653..8831622816597.3121114-CDS-M-pyrifera_M_contig70481:653..883Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70481 654..883 -
1692278068.4573631-CDS-M-pyrifera_M_contig70481:653..8831692278068.4573631-CDS-M-pyrifera_M_contig70481:653..883Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70481 654..883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70481.16823.1

>prot_M-pyrifera_M_contig70481.16823.1 ID=prot_M-pyrifera_M_contig70481.16823.1|Name=mRNA_M-pyrifera_M_contig70481.16823.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
MAGVYGAGETNYTCEVSKSTDGGKTWTQLYWNEGAFYPNGIAAWDPDHAC
FVAEADSGSAAGTHIWCTDDGKTFNQTYTNPGAANSLMDIAIVPPASNGE
AWAVGGALTSSPSASFYHTTDFGKTWTAANTISGSYASAVDCVDAQHCWA
TTLQPLFQTASVAGLSTD*
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mRNA from alignment at M-pyrifera_M_contig70481:87..883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70481.16823.1 ID=mRNA_M-pyrifera_M_contig70481.16823.1|Name=mRNA_M-pyrifera_M_contig70481.16823.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=797bp|location=Sequence derived from alignment at M-pyrifera_M_contig70481:87..883- (Macrocystis pyrifera P11B4 male)
ATGGCCGGAGTGTACGGCGCTGGAGAGACCAACTACACGTGCGAGGTGAG
CAAGTCCACCGACGGAGGAAAGACCTGGACCCAGCTCTACTGGAACGAAG
GTGCCTTCTACCCCAACGGAATCGCAGCCTGGGACCCAGACCACGCTTGC
TTCGTCGCAGAAGCAGACTCTGGATCCGCAGCTGGCACCCACATCTGGTG
CACCGACGACGGAAAGACCTTCAACCAAACGTAAGCAAAGAGAGGAGAAA
AAAAGGGGAGTTCTTTGTTTTGTTTTCTTTCCTCTTCCTTTTCCTTTTCC
TTTTCCTTCTCCTTTTTCGTTTTCCTGATTTCCCCTCAACTCTGCTCCTC
TCCACTTCCACCAACGCTTTTTCTCTCCTCCCTGTTTGCAGCTACACCAA
CCCAGGTGCCGCCAACTCTCTCATGGACATCGCCATCGTGCCACCAGCAA
GCAACGGTGAGGCATGGGCCGTCGGTGGTGCTCTTACCTCCTCCCCATCT
GCATCTTTCTACGTAAGTGGGGAACGGTTTTGGTGTTTTGTTCCATGTGC
TCTCCCTCCCCATATTTCTCATCATCATTTCATCGCTTTGCTTTTTCTCT
CTTCCCATCCCACTCCTTTTCTTCCTCTTTTTCCCGTACAGCACACCACT
GATTTCGGCAAGACCTGGACTGCCGCAAACACCATCTCTGGCTCTTACGC
TTCTGCTGTCGACTGCGTTGACGCACAACACTGCTGGGCCACCACCCTCC
AACCTCTCTTCCAAACTGCATCCGTTGCTGGCCTCAGCACGGACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70481:87..883-

>mRNA_M-pyrifera_M_contig70481.16823.1 ID=mRNA_M-pyrifera_M_contig70481.16823.1|Name=mRNA_M-pyrifera_M_contig70481.16823.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig70481:87..883- (Macrocystis pyrifera P11B4 male)
ATGGCCGGAGTGTACGGCGCTGGAGAGACCAACTACACGTGCGAGGTGAG
CAAGTCCACCGACGGAGGAAAGACCTGGACCCAGCTCTACTGGAACGAAG
GTGCCTTCTACCCCAACGGAATCGCAGCCTGGGACCCAGACCACGCTTGC
TTCGTCGCAGAAGCAGACTCTGGATCCGCAGCTGGCACCCACATCTGGTG
CACCGACGACGGAAAGACCTTCAACCAAACATGGCCGGAGTGTACGGCGC
TGGAGAGACCAACTACACGTGCGAGGTGAGCAAGTCCACCGACGGAGGAA
AGACCTGGACCCAGCTCTACTGGAACGAAGGTGCCTTCTACCCCAACGGA
ATCGCAGCCTGGGACCCAGACCACGCTTGCTTCGTCGCAGAAGCAGACTC
TGGATCCGCAGCTGGCACCCACATCTGGTGCACCGACGACGGAAAGACCT
TCAACCAAACCTACACCAACCCAGGTGCCGCCAACTCTCTCATGGACATC
GCCATCGTGCCACCAGCAAGCAACGGTGAGGCATGGGCCGTCGGTGGTGC
TCTTACCTCCTCCCCATCTGCATCTTTCTACCTACACCAACCCAGGTGCC
GCCAACTCTCTCATGGACATCGCCATCGTGCCACCAGCAAGCAACGGTGA
GGCATGGGCCGTCGGTGGTGCTCTTACCTCCTCCCCATCTGCATCTTTCT
ACCACACCACTGATTTCGGCAAGACCTGGACTGCCGCAAACACCATCTCT
GGCTCTTACGCTTCTGCTGTCGACTGCGTTGACGCACAACACTGCTGGGC
CACCACCCTCCAACCTCTCTTCCAAACTGCATCCGTTGCTGGCCTCAGCA
CGGACTAACACACCACTGATTTCGGCAAGACCTGGACTGCCGCAAACACC
ATCTCTGGCTCTTACGCTTCTGCTGTCGACTGCGTTGACGCACAACACTG
CTGGGCCACCACCCTCCAACCTCTCTTCCAAACTGCATCCGTTGCTGGCC
TCAGCACGGACTAA
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