mRNA_M-pyrifera_M_contig70478.16821.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70478.16821.1
Unique NamemRNA_M-pyrifera_M_contig70478.16821.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70478.16821.1 vs. uniprot
Match: A0A521K768_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521K768_9BACT)

HSP 1 Score: 180 bits (457), Expect = 1.600e-47
Identity = 146/401 (36.41%), Postives = 195/401 (48.63%), Query Frame = 1
Query:    7 FRDVIDATATV--PAVATFERLYYDSATAPGAA--ETNIRYIDVSDVTLPMTVAHTAGTLTSGSILGVREELILLSFDETVDG-DLDGDADGTDGFVLALLDGLDMAAEVVPTAVTMGGLSTPFDAEALDIADDGFADEGWLVAVLADEMSMGMDLNDPALFDVAWRPGQCPAGADGDMSDDVLFYIYFGHPTFA-STPINTGLVGRNRVHVVDEQFVATISPETEANCDLNQDGATGDLIPRWCEAVDPALGSMGVFPPTTSGVMDAIVASPAGGSFGLVEVDGFLIALVDENTDDTDHDLDGLKTSTLIAFVDD-LGSDLAWEYQLTDPEGSTP-------FVGASWLGADPAFGRIGIGLEESVAGMSLN------NGCGTSP---KDADTNDAVAAW 1140
            F D + ++ TV  P VA+  RLYY +A  PGA   ET++ Y+     T P  V    G      +LG  E L+ L  DE + G +L+ D D  D +VLALLD     +E+  T + +     P  A+A D  D       W VA L  E + G DLNDPALF   W    C A ADGD+ D+VL +I F       S P+NTG+ G  RV  +D   VAT+ PE +A CDL+ DG T D +PRW +    AL       P    V     ++ AGG+ GL    G L+A++ E     D D   L    L+A++D  LG+   W   ++ P G+         FVGA WL   P  GR+G+G EE+ AG  LN      N C       KD D  D++  W
Sbjct:  136 FIDTLVSSGTVVPPQVAS-GRLYY-AAELPGAGAGETSLYYLTKQSPTTPTAVIDAGGANLVVRVLGESEGLLFLGADEVLSGLELNADGDANDSYVLALLDTTLANSELAVTGLALADSEVPIAADASDAHD-------WTVAFLVSEAAQGDDLNDPALFAGGWVAENCTAVADGDLLDEVLHWITFETWLAGNSDPVNTGIPGELRVIALDGA-VATLCPEGDAGCDLDDDGDTIDSVPRWIQTTANAL-------PAGDIVHMLAASAVAGGAHGLAWNGGRLVAVLSEQQSGRDLDTSVLDHD-LVAWLDPVLGTAAVWH--VSHPSGAVGTGIGGLNFVGADWLAERPQEGRLGLGFEENTAGDVLNLPNFTLNNCLAGDLVVKDTDDLDSLPVW 516          
BLAST of mRNA_M-pyrifera_M_contig70478.16821.1 vs. uniprot
Match: A0A7C2B3Q2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2B3Q2_9BACT)

HSP 1 Score: 171 bits (433), Expect = 5.040e-44
Identity = 139/409 (33.99%), Postives = 191/409 (46.70%), Query Frame = 1
Query:   37 VPAVATFERLYYDSATAPGAAE-TNIRYIDVSDVTLPMTVAHTAGTLTSGSIL-GVREELILLSFDETVDG-DLDGDADGTDGFVLALLDGLDMAAEVVPTAVTMGGLSTPFDAEALDIADDGFADEGWLVAVLADEMSMGM-DLNDPALFDVAWRPGQCPAGADGDMSDDVLFYIYFGHPTFAS---TPINTGLVGRNRVHVVDEQFVATISPETEANCDLNQDGATGDLIPRWCEAV--DPALGSMGVFPPTTSGVMDAIVASPAGGSFGLVEVDGFLIALVDENTDDTDHDLDGLKTS-TLIAFVDDLGSDLA-WEYQLTDPE-----------------------GSTPFVGASWLGADPAFGRIGIGLEESVAG-------MSLNNGCGTSPKDADTNDAVAAW 1140
            V  VA   R+YY +   P   + T++R +     T P  V + AG  T  ++L G R +L+LL  DET+   D +GD D TD  VLA+LDG + AA V+        L     ++   I     A + W VA L DE   G  + NDPALF  +  P  C    D D +D VLF++     +FA     P+NTGLVG  RV VVD  +VATISPE +A CDLN+DG   D I RW      DPA       PP     + A+    AGGS GL  ++   +A+VDE  D    DLDG      L+ +++ L   LA W +   DP+                        S P+    ++  +  FGR+ +   ES+ G       +++N  C    KD D  DA+  W
Sbjct:  153 VELVAIESRVYYSAEAVPANGDDTSLRRVFNDSPTTPQVVENQAGGGTLDAVLLGERADLLLLGVDETIGAADRNGDGDATDTVVLAVLDGREPAARVL-------NLGLALRSQDAGIGVRSEAQDDWTVAALVDEAGQGATNFNDPALFVHSLVPDSCAGTPDADTTDQVLFHV--STKSFAQGTMLPVNTGLVGDGRVVVVDG-YVATISPEADATCDLNEDGDFADTIVRWIATTGTDPA-------PPREPAELHAVTTGIAGGSMGLASLEDRFVAVVDEAQDG--RDLDGKAADHLLLGWLEPLDGALAGWTFAHQDPKKPFIGTGVFEDVDGDGLGDPDRGASEPYASPGYMADEEEFGRLAVAFLESLPGTNPLVPSLNVNVDCDLVLKDNDLTDALPIW 542          
BLAST of mRNA_M-pyrifera_M_contig70478.16821.1 vs. uniprot
Match: A0A523PRX0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PRX0_9BACT)

HSP 1 Score: 160 bits (404), Expect = 5.940e-40
Identity = 133/400 (33.25%), Postives = 199/400 (49.75%), Query Frame = 1
Query:   19 IDATATVPAVATFERLYY--DSATAPGAAETNIRYIDVSDVTLPMTVAHTAGTLTSG---SILGVREELILLSFDETVDG-DLDGDADGTDGFVLALLDGLDMAAEVVPTAVTMGGLSTPFDAEALDIADDGFADEGWLVAVLADEMS------MGMDLNDPALFDVAWRPGQCPAG-ADGDMSDDVLFYIYFGHPTFASTPI-----NTGLVGRNRVHVVDEQFVATISPETE----ANCDLNQDGATGDLIPRWCEAVDPALGSMGVFPPTTSG----VMDAIVASPAGGSFGLVEVDGFLIALVDENTDDTDHDLDGLKTSTLIAFVDDLGSDLAWEYQLTDPEGSTPFVGASWLGADPAFGRIGIGLEESVAGMSLNNGCGTSPKDADTNDAVAAW 1140
            +D    +  +A  + L++  + A APG   T++R ID +   L  T   T    T+G    ++G  E L+ +   ETVD  DL+GD D TD FVL +LDG     EV+ T + +     PF A++  ++D       WLVA L  E +      +G++    A F   WRP QC +G  D D  D+VL YI+F    +A  P+     NTGL GR RV VVD  +V TIS E +    + CDLN D    D I RW  AV        + PP+        +  I A P GG+ GL E+DG ++ALV E  DDTD+D +      L+A+ D    D + +++      S+ + GA+W+        + + + E V  +++N   G +  D DTND++ ++
Sbjct:  159 LDTAGAISTLAVGDLLFFPEEVAMAPGMNMTSLRVIDTTVDPLAFTTITTQSLATTGLQPRLMGGDEGLVFVYMCETVDAYDLNGDGDMTDAFVLGVLDGTIATGEVMNTELGIANADVPFRADSTGVSD-------WLVAFLVSEAAQAPLDTLGLNNFMDAQFVAQWRPTQCDSGDPDQDTLDNVLHYIHFD--AWAMDPVLNPIRNTGLTGRTRVIVVDG-YVGTISSEGDEVNASGCDLNSDSDKLDRISRWTFAVGGTFQLNPIIPPSHPNDDMVALTNINAIP-GGTCGLAELDGRMVALVSEFRDDTDYD-NNPTNFNLLAWYD---PDSSGQWKFDHGTSSSFYGGATWMREVLDREHLMVAMPEDVEDININIPPGKTGPDQDTNDSIPSF 543          
BLAST of mRNA_M-pyrifera_M_contig70478.16821.1 vs. uniprot
Match: A0A518BNA8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BNA8_9BACT)

HSP 1 Score: 127 bits (319), Expect = 1.580e-28
Identity = 128/393 (32.57%), Postives = 181/393 (46.06%), Query Frame = 1
Query:    1 PVFRDVIDATATVPAVATFERLYYDSATAPGAAE-TNIRYIDVSDVTLPMTVAHTAGTLTSGSILGVREE--LILLSFDETV---DGDLDGDADGTDGFVLALLDGLDMAAEVVPTAVTMGGLSTPFDAEALDIADDGFADEGWLVAVLADEMSMGMDLNDPALFDVAWRPGQCPAGADGDMSDDVLFYIYFGHPTFASTPINTGLVGRNRVHVVDEQFVATISPETE---ANCDLNQDGATGDLIPRWCEAVDPALGSMGVFPPTTSGVMDAIVASPAGGSFGLVEVDGFLIALVDENTDDTDHDLDGLKTSTLIAFVDDLGSDLAWEYQLTDPEGSTPF-VGASWLGADPAFGRIGIGLEESVAGMSLNNGCGTSPKD---ADTNDAVAAW 1140
            P F D+ID  + +  VA   RL+Y     P A   TN+RYID++D  LP+ +     TL +  +  V  E  LI L+ DET     GDL+GD DG D  VLAL++       VV T +       PF A   +++D  F      V  L  E   G    +P++  V   P  CPA  D D  DDVL  + +   T AST  NT L G  ++ ++ E ++ T+S E++     CDL  DG T D++ RW    DP +   G        + D +  +  G S GL  V+  L A +D     T  ++ G   +         GS  +W     DP+G T   +G + +    A GR+   L ES  G++LN GC    KD   AD  DA+  W
Sbjct:  144 PEFVDLIDPDSPLGLVAAGTRLWYPVDADPIAVNGTNLRYIDIADPDLPVEIDTDGVTLGTVRVQLVAREGGLIRLAIDETAAGGQGDLNGDLDGGDTAVLALVEVDASPPLVVGTGLAQPAADAPFAAR--EVSDGNFD-----VLCLVSETQQGAVNLNPSIAAV---PAGCPA--DTDTVDDVLHLLEWQAGTIASTT-NTELAGAIKLLLM-ENWLVTLSRESDLGAGGCDLTGDGPTDDIVVRWAPLDDPTVAVDG------PDLYDPVDTAVPGESLGLTAVEPLLFAAID-----TTVNVGGSPLALPWLGRVFPGSSTSWNLTHLDPDGPTGLKLGLARMEVTQA-GRLRAELLESSQGLNLNVGCNAQVKDFFVADQTDAIPIW 510          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70478.16821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A521K768_9BACT1.600e-4736.41Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7C2B3Q2_9BACT5.040e-4433.99Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A523PRX0_9BACT5.940e-4033.25Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518BNA8_9BACT1.580e-2832.57Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70478contigM-pyrifera_M_contig70478:5..1144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1140
Cds size1140
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.211082-CDS-M-pyrifera_M_contig70478:4..11441622816597.211082-CDS-M-pyrifera_M_contig70478:4..1144Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70478 5..1144 +
1692278068.4108083-CDS-M-pyrifera_M_contig70478:4..11441692278068.4108083-CDS-M-pyrifera_M_contig70478:4..1144Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70478 5..1144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70478.16821.1prot_M-pyrifera_M_contig70478.16821.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70478 5..1144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70478.16821.1

>prot_M-pyrifera_M_contig70478.16821.1 ID=prot_M-pyrifera_M_contig70478.16821.1|Name=mRNA_M-pyrifera_M_contig70478.16821.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=380bp
PVFRDVIDATATVPAVATFERLYYDSATAPGAAETNIRYIDVSDVTLPMT
VAHTAGTLTSGSILGVREELILLSFDETVDGDLDGDADGTDGFVLALLDG
LDMAAEVVPTAVTMGGLSTPFDAEALDIADDGFADEGWLVAVLADEMSMG
MDLNDPALFDVAWRPGQCPAGADGDMSDDVLFYIYFGHPTFASTPINTGL
VGRNRVHVVDEQFVATISPETEANCDLNQDGATGDLIPRWCEAVDPALGS
MGVFPPTTSGVMDAIVASPAGGSFGLVEVDGFLIALVDENTDDTDHDLDG
LKTSTLIAFVDDLGSDLAWEYQLTDPEGSTPFVGASWLGADPAFGRIGIG
LEESVAGMSLNNGCGTSPKDADTNDAVAAW
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mRNA from alignment at M-pyrifera_M_contig70478:5..1144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70478.16821.1 ID=mRNA_M-pyrifera_M_contig70478.16821.1|Name=mRNA_M-pyrifera_M_contig70478.16821.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at M-pyrifera_M_contig70478:5..1144+ (Macrocystis pyrifera P11B4 male)
CCGGTCTTCCGCGACGTGATCGACGCCACGGCGACGGTCCCCGCGGTCGC GACCTTCGAGCGGCTGTACTACGACTCGGCGACCGCGCCGGGCGCGGCCG AGACGAACATTCGCTACATCGACGTGTCCGACGTGACGCTGCCGATGACG GTGGCGCACACCGCGGGCACGCTGACCAGCGGCTCGATCCTGGGCGTGCG CGAGGAGCTGATCCTGCTGTCGTTCGACGAGACCGTGGACGGCGACCTCG ACGGCGACGCCGACGGGACCGACGGGTTCGTGCTGGCGCTGCTGGACGGT CTGGACATGGCTGCTGAAGTGGTGCCGACGGCCGTCACGATGGGCGGTTT GTCGACGCCCTTCGACGCGGAAGCGCTGGACATCGCGGACGATGGCTTCG CGGACGAGGGCTGGTTGGTGGCCGTGCTCGCCGACGAGATGTCGATGGGC ATGGACCTGAACGACCCGGCGCTGTTCGACGTGGCGTGGCGCCCGGGCCA GTGCCCGGCCGGCGCCGACGGCGACATGAGCGACGACGTGTTGTTCTACA TCTACTTCGGGCACCCGACCTTTGCGTCGACGCCGATCAACACCGGCCTG GTCGGCCGCAACCGCGTGCACGTCGTCGACGAGCAGTTCGTCGCGACGAT CAGCCCCGAGACCGAGGCCAACTGCGACCTGAACCAGGACGGCGCGACCG GTGACCTGATCCCGCGCTGGTGCGAAGCGGTCGACCCGGCCCTCGGCTCG ATGGGCGTCTTCCCGCCGACGACCTCGGGCGTCATGGACGCGATCGTGGC CAGCCCCGCGGGCGGCTCCTTCGGCCTCGTCGAGGTCGACGGCTTCCTGA TCGCGCTGGTCGACGAGAACACCGACGACACCGACCACGACCTGGACGGG CTCAAGACCTCGACGCTGATCGCGTTCGTCGACGACCTCGGCAGCGACCT CGCGTGGGAGTACCAGTTGACCGACCCCGAGGGCTCGACGCCGTTCGTGG GCGCGTCGTGGCTCGGCGCGGACCCGGCCTTCGGGCGCATCGGCATCGGC CTCGAGGAGAGCGTCGCCGGCATGTCGCTGAACAACGGCTGCGGTACGTC GCCCAAGGACGCGGACACGAACGATGCGGTCGCCGCGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70478:5..1144+

>mRNA_M-pyrifera_M_contig70478.16821.1 ID=mRNA_M-pyrifera_M_contig70478.16821.1|Name=mRNA_M-pyrifera_M_contig70478.16821.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2280bp|location=Sequence derived from alignment at M-pyrifera_M_contig70478:5..1144+ (Macrocystis pyrifera P11B4 male)
CCGGTCTTCCGCGACGTGATCGACGCCACGGCGACGGTCCCCGCGGTCGC
GACCTTCGAGCGGCTGTACTACGACTCGGCGACCGCGCCGGGCGCGGCCG
AGACGAACATTCGCTACATCGACGTGTCCGACGTGACGCTGCCGATGACG
GTGGCGCACACCGCGGGCACGCTGACCAGCGGCTCGATCCTGGGCGTGCG
CGAGGAGCTGATCCTGCTGTCGTTCGACGAGACCGTGGACGGCGACCTCG
ACGGCGACGCCGACGGGACCGACGGGTTCGTGCTGGCGCTGCTGGACGGT
CTGGACATGGCTGCTGAAGTGGTGCCGACGGCCGTCACGATGGGCGGTTT
GTCGACGCCCTTCGACGCGGAAGCGCTGGACATCGCGGACGATGGCTTCG
CGGACGAGGGCTGGTTGGTGGCCGTGCTCGCCGACGAGATGTCGATGGGC
ATGGACCTGAACGACCCGGCGCTGTTCGACGTGGCGTGGCGCCCGGGCCA
GTGCCCGGCCGGCGCCGACGGCGACATGAGCGACGACGTGTTGTTCTACA
TCTACTTCGGGCACCCGACCTTTGCGTCGACGCCGATCAACACCGGCCTG
GTCGGCCGCAACCGCGTGCACGTCGTCGACGAGCAGTTCGTCGCGACGAT
CAGCCCCGAGACCGAGGCCAACTGCGACCTGAACCAGGACGGCGCGACCG
GTGACCTGATCCCGCGCTGGTGCGAAGCGGTCGACCCGGCCCTCGGCTCG
ATGGGCGTCTTCCCGCCGACGACCTCGGGCGTCATGGACGCGATCGTGGC
CAGCCCCGCGGGCGGCTCCTTCGGCCTCGTCGAGGTCGACGGCTTCCTGA
TCGCGCTGGTCGACGAGAACACCGACGACACCGACCACGACCTGGACGGG
CTCAAGACCTCGACGCTGATCGCGTTCGTCGACGACCTCGGCAGCGACCT
CGCGTGGGAGTACCAGTTGACCGACCCCGAGGGCTCGACGCCGTTCGTGG
GCGCGTCGTGGCTCGGCGCGGACCCGGCCTTCGGGCGCATCGGCATCGGC
CTCGAGGAGAGCGTCGCCGGCATGTCGCTGAACAACGGCTGCGGTACGTC
GCCCAAGGACGCGGACACGAACGATGCGGTCGCCGCGTGGCCGGTCTTCC
GCGACGTGATCGACGCCACGGCGACGGTCCCCGCGGTCGCGACCTTCGAG
CGGCTGTACTACGACTCGGCGACCGCGCCGGGCGCGGCCGAGACGAACAT
TCGCTACATCGACGTGTCCGACGTGACGCTGCCGATGACGGTGGCGCACA
CCGCGGGCACGCTGACCAGCGGCTCGATCCTGGGCGTGCGCGAGGAGCTG
ATCCTGCTGTCGTTCGACGAGACCGTGGACGGCGACCTCGACGGCGACGC
CGACGGGACCGACGGGTTCGTGCTGGCGCTGCTGGACGGTCTGGACATGG
CTGCTGAAGTGGTGCCGACGGCCGTCACGATGGGCGGTTTGTCGACGCCC
TTCGACGCGGAAGCGCTGGACATCGCGGACGATGGCTTCGCGGACGAGGG
CTGGTTGGTGGCCGTGCTCGCCGACGAGATGTCGATGGGCATGGACCTGA
ACGACCCGGCGCTGTTCGACGTGGCGTGGCGCCCGGGCCAGTGCCCGGCC
GGCGCCGACGGCGACATGAGCGACGACGTGTTGTTCTACATCTACTTCGG
GCACCCGACCTTTGCGTCGACGCCGATCAACACCGGCCTGGTCGGCCGCA
ACCGCGTGCACGTCGTCGACGAGCAGTTCGTCGCGACGATCAGCCCCGAG
ACCGAGGCCAACTGCGACCTGAACCAGGACGGCGCGACCGGTGACCTGAT
CCCGCGCTGGTGCGAAGCGGTCGACCCGGCCCTCGGCTCGATGGGCGTCT
TCCCGCCGACGACCTCGGGCGTCATGGACGCGATCGTGGCCAGCCCCGCG
GGCGGCTCCTTCGGCCTCGTCGAGGTCGACGGCTTCCTGATCGCGCTGGT
CGACGAGAACACCGACGACACCGACCACGACCTGGACGGGCTCAAGACCT
CGACGCTGATCGCGTTCGTCGACGACCTCGGCAGCGACCTCGCGTGGGAG
TACCAGTTGACCGACCCCGAGGGCTCGACGCCGTTCGTGGGCGCGTCGTG
GCTCGGCGCGGACCCGGCCTTCGGGCGCATCGGCATCGGCCTCGAGGAGA
GCGTCGCCGGCATGTCGCTGAACAACGGCTGCGGTACGTCGCCCAAGGAC
GCGGACACGAACGATGCGGTCGCCGCGTGG
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