mRNA_M-pyrifera_M_contig70417.16815.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70417.16815.1
Unique NamemRNA_M-pyrifera_M_contig70417.16815.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70417.16815.1 vs. uniprot
Match: A0A5A8E048_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E048_CAFRO)

HSP 1 Score: 120 bits (301), Expect = 1.250e-29
Identity = 67/155 (43.23%), Postives = 94/155 (60.65%), Query Frame = 1
Query:   13 DILLGALPFASDVSELQKQGVVAVVNMCEEWEGPVEEYKARGIEQLRLPVVDGDMPTLEQLVQAVQFAHRFLGPEAKRAAQADPTSSSNPAVFVHCRCGMGRSASVVLALLMLRTRASSRHHAKVILDAIRSKRPEVAAGVGAYRSIRQWRRLIA 477
            ++LLGALP+ASD + L+ +GV  VVNMC EW GP ++Y A GIEQL LP  DGDMP+ +  + AV+F    +       A+ D        VFVHCRCG+GRSA+VVL  L+    A+        ++ +R  RPEV +G+  Y ++R++  L A
Sbjct:  164 EVLLGALPYASDAASLRARGVTGVVNMCAEWPGPTKQYDALGIEQLHLPTTDGDMPSADAAIAAVRFIEGHV-------AKGDR-------VFVHCRCGIGRSATVVLCYLI----ATYGMQLDDAVEHLRLVRPEVGSGIAKYPTVRRFAALTA 300          
BLAST of mRNA_M-pyrifera_M_contig70417.16815.1 vs. uniprot
Match: A0A813BYG7_9DINO (DUSP26 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BYG7_9DINO)

HSP 1 Score: 100 bits (250), Expect = 9.340e-23
Identity = 58/145 (40.00%), Postives = 84/145 (57.93%), Query Frame = 1
Query:   10 RDILLGALPFASDVSELQKQGVVAVVNMCEEWEGPVEEYKARGIEQLRLPVVDGDMPTLEQLVQAVQFAHRFLGPEAKRAAQADPTSSSNPAVFVHCRCGMGRSASVVLALLMLRTRASSRHHAKVILDAIRSKRPEVAAGVGAY 444
            + + LG++PF+ DV  L+ +GV  VVNMC E+EGP+  Y   G+EQL +PV DGD+P   Q+ QA+++              AD  ++    V VHC+ GMGRSA++VLA  +    A     AK  +  +++ RPEVA GV  Y
Sbjct:  160 QQVFLGSIPFSWDVRHLRHRGVTHVVNMCAEYEGPIAAYAKAGVEQLYVPVPDGDVPRTPQVQQALRW-------------MADALATPTNRVLVHCKAGMGRSATIVLAHFIANGWA-----AKKAVQHMKTLRPEVAGGVLHY 286          
BLAST of mRNA_M-pyrifera_M_contig70417.16815.1 vs. uniprot
Match: A0A7Z9GYI6_9PLAN (Phosphatase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Z9GYI6_9PLAN)

HSP 1 Score: 94.0 bits (232), Expect = 3.300e-21
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:   16 ILLGALPFASDVSELQKQGVVAVVNMCEEWEGPVEEYKARGIEQLRLPVVDGDMPTLEQLVQAVQFAHRFLGPEAKRAAQADPTSSSNPAVFVHCRCGMGRSASVVLALLMLRTRASSRHHAKVILDAIRSKRPEVAAGVGAYRSIRQW 462
            ++LGA PFA D S LQ  GV AVVN CEE+ GP   Y+  GIEQLR+P VD   P+L  + QAVQF               D   ++   V+VHC+ G GRSA+VVL  L+    A+ +   +     + S+RP V  G+     ++++
Sbjct:   37 VILGAFPFARDASRLQALGVGAVVNTCEEYAGPQAAYQEAGIEQLRIPTVDFTPPSLADVEQAVQFM--------------DEQIATGKKVYVHCKAGRGRSATVVLCWLV----ANRQMTPEAAQAHLVSQRPHVNRGLAQREVVKEF 167          
BLAST of mRNA_M-pyrifera_M_contig70417.16815.1 vs. uniprot
Match: A0A821HTT8_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821HTT8_9BILA)

HSP 1 Score: 95.9 bits (237), Expect = 6.210e-21
Identity = 53/147 (36.05%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   22 LGALPFASDVSELQKQGVVAVVNMCEEWEGPVEEYKARGIEQLRLPVVDGDMPTLEQLVQAVQFAHRFLGPEAKRAAQADPTSSSNPAVFVHCRCGMGRSASVVLALLMLRTRASSRHHAKVILDAIRSKRPEVAAGVGAYRSIRQW 462
            LG LP  +DV  L   G+  VVNMC E+ GP + YK   I+QL LP VD   P+L+ + +A++F                   ++N  +FVHC+ GMGRSA++VL  L+   + S ++  K++ +    KRPEV+  +  Y S++Q+
Sbjct:  152 LGCLPIPADVETLSNIGIKYVVNMCAEYSGPRKTYKKYNIKQLHLPTVDSTAPSLKTIDKAIKFMKEVY--------------TNNEKIFVHCKAGMGRSATIVLCHLVANEQMSPKNALKLLKE----KRPEVSTSIITYGSVKQF 280          
BLAST of mRNA_M-pyrifera_M_contig70417.16815.1 vs. uniprot
Match: A0A819MK01_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A819MK01_9BILA)

HSP 1 Score: 95.5 bits (236), Expect = 1.340e-20
Identity = 53/147 (36.05%), Postives = 81/147 (55.10%), Query Frame = 1
Query:   22 LGALPFASDVSELQKQGVVAVVNMCEEWEGPVEEYKARGIEQLRLPVVDGDMPTLEQLVQAVQFAHRFLGPEAKRAAQADPTSSSNPAVFVHCRCGMGRSASVVLALLMLRTRASSRHHAKVILDAIRSKRPEVAAGVGAYRSIRQW 462
            LG LP A+DV  L   G+  VVNMC E+ GP   YK   I+QL LP +D   P+L+ + +A++F +                 ++N  +FVHC+ GMGRSA++VL  L+   + SS +  K++ +    KRPE+   +  Y  +RQ+
Sbjct:  181 LGCLPTAADVKTLNNIGIEYVVNMCAEYNGPHRTYKKYNIKQLHLPTIDCTAPSLKTIEKAIKFMNEAY--------------TNNKKIFVHCKAGMGRSATIVLCHLVANEKMSSENALKLMKE----KRPEITTSIIKYAPVRQF 309          
BLAST of mRNA_M-pyrifera_M_contig70417.16815.1 vs. uniprot
Match: A0A818VA65_9BILA (Hypothetical protein n=7 Tax=Rotaria TaxID=231623 RepID=A0A818VA65_9BILA)

HSP 1 Score: 95.1 bits (235), Expect = 2.370e-20
Identity = 55/147 (37.41%), Postives = 83/147 (56.46%), Query Frame = 1
Query:   22 LGALPFASDVSELQKQGVVAVVNMCEEWEGPVEEYKARGIEQLRLPVVDGDMPTLEQLVQAVQFAHRFLGPEAKRAAQADPTSSSNPAVFVHCRCGMGRSASVVLALLMLRTRASSRHHAKVILDAIRSKRPEVAAGVGAYRSIRQW 462
            LG LP A DV  L K G+  VVNMC E+ GP + Y    I+QLRLP +D  +P+L+ + +A++F +                 ++N  +FVHC+ GMGRSA++VL  L+    A+ +  A   L  I+ KRPEV A +  +  ++Q+
Sbjct:  199 LGCLPTAVDVETLNKIGIKYVVNMCAEYLGPRKAYAKYSIKQLRLPTIDCTLPSLQSIEKAIKFMNEAY--------------TNNEKIFVHCKAGMGRSATIVLCHLV----ANEKMSADDALKLIKEKRPEVTATIIDFECVKQF 327          
BLAST of mRNA_M-pyrifera_M_contig70417.16815.1 vs. uniprot
Match: A0A818TAT8_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818TAT8_9BILA)

HSP 1 Score: 95.9 bits (237), Expect = 3.990e-20
Identity = 53/147 (36.05%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   22 LGALPFASDVSELQKQGVVAVVNMCEEWEGPVEEYKARGIEQLRLPVVDGDMPTLEQLVQAVQFAHRFLGPEAKRAAQADPTSSSNPAVFVHCRCGMGRSASVVLALLMLRTRASSRHHAKVILDAIRSKRPEVAAGVGAYRSIRQW 462
            LG LP  +DV  L   G+  VVNMC E+ GP + YK   I+QL LP VD   P+L+ + +A++F                   ++N  +FVHC+ GMGRSA++VL  L+   + S ++  K++ +    KRPEV+  +  Y S++Q+
Sbjct:  353 LGCLPIPADVETLSNIGIKYVVNMCAEYSGPRKTYKKYNIKQLHLPTVDSTAPSLKTIDKAIKFMKEVY--------------TNNEKIFVHCKAGMGRSATIVLCHLVANEQMSPKNALKLLKE----KRPEVSTSIITYGSVKQF 481          
BLAST of mRNA_M-pyrifera_M_contig70417.16815.1 vs. uniprot
Match: A0A2E3RIW8_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E3RIW8_9PLAN)

HSP 1 Score: 92.4 bits (228), Expect = 6.270e-20
Identity = 53/116 (45.69%), Postives = 64/116 (55.17%), Query Frame = 1
Query:    7 ERDILLGALPFASDVSELQKQGVVAVVNMCEEWEGPVEEYKARGIEQLRLPVVDGDMPTLEQLVQAVQFAHRFLGPEAKRAAQADPTSSSNPAVFVHCRCGMGRSASVVLALLMLR 354
            E  ILLGALPF+ DV  LQ +GV  V+NMC E+ GP   Y+  GIEQL LP VD   PT+  + QA+ F  R      K              V+VHC+ G GRSA+VVL   M R
Sbjct:  102 EEPILLGALPFSRDVPHLQAEGVTGVINMCIEYPGPKIAYEKAGIEQLWLPTVDFTPPTMGDIQQAINFIERHEKGGGK--------------VYVHCKAGRGRSATVVLCWTMYR 203          
BLAST of mRNA_M-pyrifera_M_contig70417.16815.1 vs. uniprot
Match: A0A2E8CZQ4_9PLAN (Phosphatase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8CZQ4_9PLAN)

HSP 1 Score: 90.5 bits (223), Expect = 6.920e-20
Identity = 50/158 (31.65%), Postives = 87/158 (55.06%), Query Frame = 1
Query:    7 ERDILLGALPFASDVSELQKQGVVAVVNMCEEWEGPVEEYKARGIEQLRLPVVDGDMPTLEQLVQAVQFAHRFLGPEAKRAAQADPTSSSNPAVFVHCRCGMGRSASVVLALLMLRTRASSRHHAKVILDAIRSKRPEVAAGVGAYRSIRQWRRLIAK 480
            +  ++LGALP A D+  LQ++ V  V+N CEE+ GPV  Y+  GIEQLRLP +D   P+L+ + + V F  R               +++  +V+VHC+ G  RSA++ +  LM     S     ++++D    +RP V A + +   ++++  L+++
Sbjct:   31 DEHLVLGALPLARDIPSLQEERVAGVINTCEEYAGPVTAYEQAGIEQLRLPTIDFTHPSLDSVQRGVSFIERH--------------AATGNSVYVHCKAGRARSATIAICWLMAFRNLSPADAQQLLID----RRPHVNAKLTSRPVVQEFHALMSR 170          
BLAST of mRNA_M-pyrifera_M_contig70417.16815.1 vs. uniprot
Match: A0A5C6AX97_9BACT (Uncharacterized protein n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6AX97_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 1.550e-19
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   16 ILLGALPFASDVSELQKQGVVAVVNMCEEWEGPVEEYKARGIEQLRLPVVDGDMPTLEQLVQAVQFAHRFLGPEAKRAAQADPTSSSNPAVFVHCRCGMGRSASVVLALLM 348
            +++GA PFASDV+ L+ +GV AVVN CEE+ GP+ EY   GIEQL +P  D   P+L  + +AV+F  ++                 N  V++HC+ G  RSA+V +  L+
Sbjct:   42 VIVGAYPFASDVASLRGEGVRAVVNTCEEYAGPISEYDKHGIEQLHIPTTDFTHPSLAAVSEAVEFIQKY--------------KLQNDVVYIHCKAGRARSATVAICWLI 138          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70417.16815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E048_CAFRO1.250e-2943.23Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A813BYG7_9DINO9.340e-2340.00DUSP26 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A7Z9GYI6_9PLAN3.300e-2138.93Phosphatase n=1 Tax=Planctomycetaceae bacterium Ta... [more]
A0A821HTT8_9BILA6.210e-2136.05Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
A0A819MK01_9BILA1.340e-2036.05Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A818VA65_9BILA2.370e-2037.41Hypothetical protein n=7 Tax=Rotaria TaxID=231623 ... [more]
A0A818TAT8_9BILA3.990e-2036.05Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 ... [more]
A0A2E3RIW8_9PLAN6.270e-2045.69Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A2E8CZQ4_9PLAN6.920e-2031.65Phosphatase n=1 Tax=Planctomycetaceae bacterium Ta... [more]
A0A5C6AX97_9BACT1.550e-1939.64Uncharacterized protein n=1 Tax=Stieleria varia Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70417contigM-pyrifera_M_contig70417:423..902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score87.8
Seed ortholog evalue5e-15
Seed eggNOG ortholog595460.RRSWK_01686
KEGG koko:K04459,ko:K14165
KEGG Pathwayko04010,map04010
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,COG2453@2
EC3.1.3.16,3.1.3.48
COG Functional cat.T
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.9888408-CDS-M-pyrifera_M_contig70417:422..9021622816596.9888408-CDS-M-pyrifera_M_contig70417:422..902Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70417 423..902 -
1692278068.3133695-CDS-M-pyrifera_M_contig70417:422..9021692278068.3133695-CDS-M-pyrifera_M_contig70417:422..902Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70417 423..902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70417.16815.1prot_M-pyrifera_M_contig70417.16815.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70417 423..902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70417.16815.1

>prot_M-pyrifera_M_contig70417.16815.1 ID=prot_M-pyrifera_M_contig70417.16815.1|Name=mRNA_M-pyrifera_M_contig70417.16815.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
SDERDILLGALPFASDVSELQKQGVVAVVNMCEEWEGPVEEYKARGIEQL
RLPVVDGDMPTLEQLVQAVQFAHRFLGPEAKRAAQADPTSSSNPAVFVHC
RCGMGRSASVVLALLMLRTRASSRHHAKVILDAIRSKRPEVAAGVGAYRS
IRQWRRLIAK
back to top

mRNA from alignment at M-pyrifera_M_contig70417:423..902-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70417.16815.1 ID=mRNA_M-pyrifera_M_contig70417.16815.1|Name=mRNA_M-pyrifera_M_contig70417.16815.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig70417:423..902- (Macrocystis pyrifera P11B4 male)
TCCGACGAGCGCGACATTCTCTTGGGAGCACTTCCTTTTGCGAGTGATGT CTCTGAGCTGCAGAAACAAGGGGTCGTAGCAGTGGTGAATATGTGTGAGG AATGGGAAGGGCCAGTGGAAGAGTACAAAGCCCGTGGGATTGAACAGCTG CGTCTTCCAGTGGTGGATGGAGACATGCCAACTTTGGAACAATTGGTGCA AGCCGTCCAATTCGCACATCGATTCTTAGGCCCTGAAGCAAAGAGGGCTG CCCAAGCAGACCCTACCTCCTCTTCCAACCCTGCAGTCTTTGTTCATTGT CGCTGTGGGATGGGCCGCTCTGCTTCCGTTGTCCTAGCTCTCCTCATGTT GCGCACCAGAGCTTCATCAAGGCACCATGCCAAAGTCATCCTTGATGCCA TCCGGAGCAAACGCCCCGAAGTTGCTGCTGGTGTTGGTGCCTATCGCTCC ATCCGACAATGGCGGAGACTGATTGCGAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig70417:423..902-

>mRNA_M-pyrifera_M_contig70417.16815.1 ID=mRNA_M-pyrifera_M_contig70417.16815.1|Name=mRNA_M-pyrifera_M_contig70417.16815.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig70417:423..902- (Macrocystis pyrifera P11B4 male)
TCCGACGAGCGCGACATTCTCTTGGGAGCACTTCCTTTTGCGAGTGATGT
CTCTGAGCTGCAGAAACAAGGGGTCGTAGCAGTGGTGAATATGTGTGAGG
AATGGGAAGGGCCAGTGGAAGAGTACAAAGCCCGTGGGATTGAACAGCTG
CGTCTTCCAGTGGTGGATGGAGACATGCCAACTTTGGAACAATTGGTGCA
AGCCGTCCAATTCGCACATCGATTCTTAGGCCCTGAAGCAAAGAGGGCTG
CCCAAGCAGACCCTACCTCCTCTTCCAACCCTGCAGTCTTTGTTCATTGT
CGCTGTGGGATGGGCCGCTCTGCTTCCGTTGTCCTAGCTCTCCTCATGTT
GCGCACCAGAGCTTCATCAAGGCACCATGCCAAAGTCATCCTTGATGCCA
TCCGGAGCAAACGCCCCGAAGTTGCTGCTGGTGTTGGTGCCTATCGCTCC
ATCCGACAATGGCGGAGACTGATTGCGAAGTCCGACGAGCGCGACATTCT
CTTGGGAGCACTTCCTTTTGCGAGTGATGTCTCTGAGCTGCAGAAACAAG
GGGTCGTAGCAGTGGTGAATATGTGTGAGGAATGGGAAGGGCCAGTGGAA
GAGTACAAAGCCCGTGGGATTGAACAGCTGCGTCTTCCAGTGGTGGATGG
AGACATGCCAACTTTGGAACAATTGGTGCAAGCCGTCCAATTCGCACATC
GATTCTTAGGCCCTGAAGCAAAGAGGGCTGCCCAAGCAGACCCTACCTCC
TCTTCCAACCCTGCAGTCTTTGTTCATTGTCGCTGTGGGATGGGCCGCTC
TGCTTCCGTTGTCCTAGCTCTCCTCATGTTGCGCACCAGAGCTTCATCAA
GGCACCATGCCAAAGTCATCCTTGATGCCATCCGGAGCAAACGCCCCGAA
GTTGCTGCTGGTGTTGGTGCCTATCGCTCCATCCGACAATGGCGGAGACT
GATTGCGAAG
back to top