mRNA_M-pyrifera_M_contig7038.16808.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7038.16808.1
Unique NamemRNA_M-pyrifera_M_contig7038.16808.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7038.16808.1 vs. uniprot
Match: D7G636_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G636_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 3.210e-58
Identity = 100/119 (84.03%), Postives = 111/119 (93.28%), Query Frame = 1 
Query:    1 MSRRRKAGGKSLEVIQRLQQRVSEGEYYEALQLYKTSYSRLKAQGKLDDAEELLVTGAIAMSKENELNAATELGLLIIASFEENDRVVDEARLSQLKKIAEAMTPGVEMSEYLRRAIKY 357
            MSRRRK GG SL+V+QRLQQRVSEGE+YEALQLYKTSYSRLKAQG+LDDAEELL  GAIAMSKENELNAATELGLLI+ SFEEN R VDEARLSQLK++A AMTPGVEMSE+L+RAI++
Sbjct:    1 MSRRRKPGGNSLDVVQRLQQRVSEGEFYEALQLYKTSYSRLKAQGRLDDAEELLTAGAIAMSKENELNAATELGLLIVTSFEENGREVDEARLSQLKRVAVAMTPGVEMSEFLKRAIRW 119
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BLAST of mRNA_M-pyrifera_M_contig7038.16808.1 vs. uniprot
Match: A0A485LBU1_9STRA (Aste57867_19039 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBU1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.550e-12
Identity = 41/108 (37.96%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:   40 VIQRLQQRVSEGEYYEALQLYKTSYSRLKAQGKLDDAEELLVTGAIAMSKENELNAATELGLLIIASFEENDRVVDEARLSQLKKIAEAMTPGV--EMSEYLRRAIKY 357
            V ++L++R+ +G+YY ALQ+YKT YSR  A G    A EL  T A+ ++   +  AA E+G L++  +  N  VVDE   +++K I++A       E SE+L++A+K+
Sbjct:   14 VAEKLEERLKQGDYYGALQMYKTLYSRYAAAGDHMKAIELAQTAAVQLANHEQWTAAREMGCLMLDLYGNNAFVVDETNKARVKVISDAFQNKCPKEESEFLKQAVKW 121
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BLAST of mRNA_M-pyrifera_M_contig7038.16808.1 vs. uniprot
Match: A0A418AME2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AME2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.730e-12
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:   40 VIQRLQQRVSEGEYYEALQLYKTSYSRLKAQGKLDDAEELLVTGAIAMSKENELNAATELGLLIIASFEENDRVVDEARLSQLKKIAEAMTPGV--EMSEYLRRAIKY 357
            V  +L++R+ +G+YY ALQ+YKT YSR  A G    A EL  T A+ ++  ++  A+ E+G L++  +  N   VDE+  S++K I+EA       E +E+L+ A+K+
Sbjct:   14 VADKLEERLKQGDYYGALQMYKTLYSRYAAAGDHLRAIELAHTAAVQLANHDQWTASREMGCLLLDLYVTNKVPVDESNKSRIKAISEAFRNACPKEEAEFLKHAVKW 121
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BLAST of mRNA_M-pyrifera_M_contig7038.16808.1 vs. uniprot
Match: A0A024U6J4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024U6J4_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.340e-12
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:   40 VIQRLQQRVSEGEYYEALQLYKTSYSRLKAQGKLDDAEELLVTGAIAMSKENELNAATELGLLIIASFEENDRVVDEARLSQLKKIAEAMTPGV--EMSEYLRRAIKY 357
            V  +L++R+ +G+YY ALQ+YKT YSR  A G    A EL  T A+ ++  ++  A+ E+G L++  +  N   VDE+  S++K I+EA       E +E+L+ A+K+
Sbjct:   14 VADKLEERLKQGDYYGALQMYKTLYSRYAASGDHLRAIELAHTAAVQLANHDQWTASREMGCLLLDLYVANKVPVDESNKSRIKAISEAFRNACPKEEAEFLKHAVKW 121
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BLAST of mRNA_M-pyrifera_M_contig7038.16808.1 vs. uniprot
Match: A0A1V9ZYH2_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYH2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.040e-11
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:   40 VIQRLQQRVSEGEYYEALQLYKTSYSRLKAQGKLDDAEELLVTGAIAMSKENELNAATELGLLIIASFEENDRVVDEARLSQLKKIAEAM--TPGVEMSEYLRRAIKY 357
            V ++L++R+ +G++Y ALQ+YKT YSR  A G    A EL  T AI ++  ++  AA E+G L+I  +      VDE   ++++ I+E    T   E SE+L+ A+K+
Sbjct:   14 VAEKLEERLKQGDFYGALQMYKTLYSRYAAAGDHMRAIELAQTAAIQLANHDQFTAAREMGCLMIDLYMSQAFPVDETNKARIQSISETFKATAAKEHSEFLKHAVKW 121
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BLAST of mRNA_M-pyrifera_M_contig7038.16808.1 vs. uniprot
Match: A0A067C238_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C238_SAPPC)

HSP 1 Score: 68.9 bits (167), Expect = 1.660e-11
Identity = 42/121 (34.71%), Postives = 74/121 (61.16%), Query Frame = 1 
Query:    1 MSRRRKAGGKSLEVIQRLQQRVSEGEYYEALQLYKTSYSRLKAQGKLDDAEELLVTGAIAMSKENELNAATELGLLIIASFEENDRVVDEARLSQLKKIAEAM--TPGVEMSEYLRRAIKY 357
            M R+ K+   +  V ++L++R+ +G++Y ALQ+YKT YSR  A G    A +L  T A+ ++K ++  AA E+G L+I  +      VD A  ++++ I+EA   T   + SE+L++A+K+
Sbjct:    1 MVRQIKSARGAASVAEKLEERLKQGDFYGALQMYKTLYSRYAAAGDHMRAIDLAHTAAVQLAKHDQFTAAREMGCLMIDLYMAQKFTVDAANKARVQAISEAFSATATKDHSEFLKQAVKW 121
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BLAST of mRNA_M-pyrifera_M_contig7038.16808.1 vs. uniprot
Match: A9RVM5_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RVM5_PHYPA)

HSP 1 Score: 67.4 bits (163), Expect = 8.440e-11
Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   43 IQRLQQRVSEGEYYEALQLYKTSYSRLKAQGKLDDAEELLVTGAIAMSKENELNAATELGLLIIASFEENDRVVDEARLSQLKKIAEA 306
            +++L++RV EG YYEA Q+YKT +SR     K ++A ELL +GA+AM    E+   TELG+L+I +F       D + L Q++ I  A
Sbjct:   14 LEKLEKRVHEGNYYEAQQMYKTIHSRYMHAKKYNEAIELLNSGAVAMLNHGEVTCGTELGVLLIQTFNVAKLPFDSSTLDQIRTIYNA 101
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BLAST of mRNA_M-pyrifera_M_contig7038.16808.1 vs. uniprot
Match: A0A1V9Z8Y5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8Y5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 9.100e-11
Identity = 43/121 (35.54%), Postives = 72/121 (59.50%), Query Frame = 1 
Query:    1 MSRRRKAGGKSLEVIQRLQQRVSEGEYYEALQLYKTSYSRLKAQGKLDDAEELLVTGAIAMSKENELNAATELGLLIIASFEENDRVVDEARLSQLKKIAEAM--TPGVEMSEYLRRAIKY 357
            M R+ K+   +  V ++L++R+ +G++Y ALQ+YKT YSR  A G    A EL    AI ++K  +  AA E+G+L+I  +  N   VD    ++++ I+EA   T   + SE+L+ A+K+
Sbjct:    1 MVRQIKSARGAASVAEKLEERLRQGDFYGALQMYKTLYSRYAAAGDHLRAIELAHGAAIQLAKHEQFTAAREMGVLMIDLYVANAFTVDATNKARVQTISEAFSATATKDHSEFLKAAVKW 121
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BLAST of mRNA_M-pyrifera_M_contig7038.16808.1 vs. uniprot
Match: A0A6G0XIH1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIH1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 9.170e-11
Identity = 39/108 (36.11%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:   40 VIQRLQQRVSEGEYYEALQLYKTSYSRLKAQGKLDDAEELLVTGAIAMSKENELNAATELGLLIIASFEENDRVVDEARLSQLKKIAEAMTPGV--EMSEYLRRAIKY 357
            V ++L++R+ +G+YY ALQ+YKT YSR  A G    A +L    A+ ++K  +  AA E+G L++  +  N   VDE   +++K I+ A       E SE L++A+K+
Sbjct:   14 VAEKLEERLKQGDYYGALQMYKTLYSRYAAAGDHLRAIDLAHNSAVQLAKHQQWTAAREMGCLMLDLYASNAFAVDETNKARIKDISNAFQNACPKEESEVLKQAVKW 121
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BLAST of mRNA_M-pyrifera_M_contig7038.16808.1 vs. uniprot
Match: A0A7S1CAX0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAX0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.570e-10
Identity = 39/109 (35.78%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:   40 VIQRLQQRVSEGEYYEALQLYKTSYSRLKAQGKLDDAEELLVTGAIAMSKENELNAATELGLLIIASFEENDRVVDEARLSQLKKIAEAMTP---GVEMSEYLRRAIKY 357
            V ++L+  V+ G++Y ALQ+YKT YSR  A+G+  +AE LL  GA+ M +  +L A  EL  L+++ + E +    +A  + L +I +A      G E + +L  AIK+
Sbjct:   34 VQEKLKASVAGGDFYSALQMYKTLYSRKNARGRHAEAEALLSEGALVMLEHGQLAAGCELATLLVSRWVERNAPASDATATTLGRINDAFVAAGTGKEHASFLLAAIKW 142
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7038.16808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G636_ECTSI3.210e-5884.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A485LBU1_9STRA2.550e-1237.96Aste57867_19039 protein n=1 Tax=Aphanomyces stella... [more]
A0A418AME2_9STRA4.730e-1237.04Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024U6J4_9STRA9.340e-1237.04Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A1V9ZYH2_9STRA1.040e-1137.04Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A067C238_SAPPC1.660e-1134.71Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A9RVM5_PHYPA8.440e-1142.05Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A1V9Z8Y5_9STRA9.100e-1135.54Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0XIH1_9STRA9.170e-1136.11Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A7S1CAX0_9STRA1.570e-1035.78Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7038contigM-pyrifera_M_contig7038:11892..13246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.6
Seed ortholog evalue1.1e-46
Seed eggNOG ortholog2880.D7G636
Preferred nameGET4
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006508,GO:0006605,GO:0006612,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007029,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0015031,GO:0015833,GO:0016043,GO:0019538,GO:0030163,GO:0031647,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034976,GO:0036503,GO:0036506,GO:0042221,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045048,GO:0045184,GO:0045185,GO:0046907,GO:0050896,GO:0051087,GO:0051179,GO:0051205,GO:0051220,GO:0051234,GO:0051235,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071816,GO:0071818,GO:0071840,GO:0072379,GO:0072380,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1904378
EggNOG free text desc.protein insertion into ER membrane
EggNOG OGsKOG3024@1,KOG3024@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.6322486-CDS-M-pyrifera_M_contig7038:11891..120891622816596.6322486-CDS-M-pyrifera_M_contig7038:11891..12089Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7038 11892..12089 +
1692278068.137996-CDS-M-pyrifera_M_contig7038:11891..120891692278068.137996-CDS-M-pyrifera_M_contig7038:11891..12089Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7038 11892..12089 +
1622816596.6440651-CDS-M-pyrifera_M_contig7038:13087..132461622816596.6440651-CDS-M-pyrifera_M_contig7038:13087..13246Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7038 13088..13246 +
1692278068.1475942-CDS-M-pyrifera_M_contig7038:13087..132461692278068.1475942-CDS-M-pyrifera_M_contig7038:13087..13246Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7038 13088..13246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7038.16808.1prot_M-pyrifera_M_contig7038.16808.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7038 11892..13246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7038.16808.1

>prot_M-pyrifera_M_contig7038.16808.1 ID=prot_M-pyrifera_M_contig7038.16808.1|Name=mRNA_M-pyrifera_M_contig7038.16808.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
MSRRRKAGGKSLEVIQRLQQRVSEGEYYEALQLYKTSYSRLKAQGKLDDA
EELLVTGAIAMSKENELNAATELGLLIIASFEENDRVVDEARLSQLKKIA
EAMTPGVEMSEYLRRAIKY
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mRNA from alignment at M-pyrifera_M_contig7038:11892..13246+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7038.16808.1 ID=mRNA_M-pyrifera_M_contig7038.16808.1|Name=mRNA_M-pyrifera_M_contig7038.16808.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1355bp|location=Sequence derived from alignment at M-pyrifera_M_contig7038:11892..13246+ (Macrocystis pyrifera P11B4 male)
ATGTCTAGGCGACGCAAGGCTGGAGGAAAGAGCCTGGAGGTGATCCAGCG
GCTGCAGCAGCGCGTGTCAGAAGGGGAGTACTACGAGGCGCTGCAGCTGT
ACAAGACGTCCTACTCGAGGCTCAAGGCTCAGGGAAAGCTTGACGATGCG
GAGGAGTTGCTCGTTACTGGGGCAATCGCTATGTCCAAAGAGAACGAGGT
GTGCTATAGGTCATATCACAGGGTAGAAAAAAGAAAATTGCATCCAGGGG
TAGAGAAGGCGAGGCGTGCCCCTGTAACTGGGCTAACTGATGTGGTCGCT
CGCCGTTGCACGAGCGGCAGCGGCCGGGTCTGTCGACGAGAAAGTGGACT
GTAATCGTATTTGAAAGCCCAGCAGCCTTTGCTGCGGGCGGTTAAGAGGT
ACACTTGTGATGTACAGCAGTACCTGGTACTCTTGTGCACCCGTGAAGTA
GAGTTCGCTCCTTCCGCGAAGGTAGCACTGCTCTGCTGCACTGCTGTACG
AATGTCTATATTTACCGAATGCTCGTATTTTTGACTACCAGGTACGATAC
TGCTACTGTATGATACTACAGATACTTCTTACCGGCATGTAGACTATCAA
CATGTGTACAGCAGGTACACCAGCAGCAGTGCACGTATGGAGAGAGCAAA
CATCTTGAGCGTTTTAATACCTTCGCCCTCTTTTTTTTGTGCTACAAGCC
TTTTGAAGCTGCCTACGTATTGATGTGTACTCTTCCAATTTCACGCCACA
GAACAGCAAACTATCGTTGTTCCTGCCGAACATCCTTGGAATGTGAGGCA
AGGTCCCCCTCTTGCTCTCACTCCATCGTTTCCCGCGCTCGTTCGACTGG
GTGAATCAAAAGCCGCGCTTGATCCACTACCCAAAACCTGGTGATTACTC
CGCGCTACAACAACGTGCCCCCCCTCCCCCCGCTCTCCGAATGCGGACCT
GAATCAGCGGTTAGAGAGACGAGACCGTTGAGATGTGCGCCGCAAGACGA
CGCTTGCACATACGCCTCCCCTGCCCCTCCCACCTCTCCCTCCCTCCCTC
CCTCCCCCCACACCCGGGCATGACTCCGCGGCAGAGACAAGATACCGTTG
ACAATGTGCGCCGAAAGACCAACGTTTGCGAAAACGCCTCCATTGCTCCC
CCTCCACCCCCCCCCCGCCTCTCCTCCAAACCCGGACCTGGCTTAGTTGA
ATGCCGCCACCGAGTTGGGGCTGCTGATCATCGCGAGCTTCGAGGAGAAC
GATCGAGTCGTGGACGAGGCGAGGCTGTCGCAGCTCAAGAAGATAGCGGA
GGCCATGACACCGGGCGTGGAGATGTCGGAGTATCTGCGTCGCGCTATCA
AGTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7038:11892..13246+

>mRNA_M-pyrifera_M_contig7038.16808.1 ID=mRNA_M-pyrifera_M_contig7038.16808.1|Name=mRNA_M-pyrifera_M_contig7038.16808.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig7038:11892..13246+ (Macrocystis pyrifera P11B4 male)
ATGTCTAGGCGACGCAAGGCTGGAGGAAAGAGCCTGGAGGTGATCCAGCG
GCTGCAGCAGCGCGTGTCAGAAGGGGAGTACTACGAGGCGCTGCAGCTGT
ACAAGACGTCCTACTCGAGGCTCAAGGCTCAGGGAAAGCTTGACGATGCG
GAGGAGTTGCTCGTTACTGGGGCAATCGCTATGTCCAAAGAGAACGAGAT
GTCTAGGCGACGCAAGGCTGGAGGAAAGAGCCTGGAGGTGATCCAGCGGC
TGCAGCAGCGCGTGTCAGAAGGGGAGTACTACGAGGCGCTGCAGCTGTAC
AAGACGTCCTACTCGAGGCTCAAGGCTCAGGGAAAGCTTGACGATGCGGA
GGAGTTGCTCGTTACTGGGGCAATCGCTATGTCCAAAGAGAACGAGTTGA
ATGCCGCCACCGAGTTGGGGCTGCTGATCATCGCGAGCTTCGAGGAGAAC
GATCGAGTCGTGGACGAGGCGAGGCTGTCGCAGCTCAAGAAGATAGCGGA
GGCCATGACACCGGGCGTGGAGATGTCGGAGTATCTGCGTCGCGCTATCA
AGTACTTGAATGCCGCCACCGAGTTGGGGCTGCTGATCATCGCGAGCTTC
GAGGAGAACGATCGAGTCGTGGACGAGGCGAGGCTGTCGCAGCTCAAGAA
GATAGCGGAGGCCATGACACCGGGCGTGGAGATGTCGGAGTATCTGCGTC
GCGCTATCAAGTAC
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