mRNA_M-pyrifera_M_contig70348.16805.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70348.16805.1
Unique NamemRNA_M-pyrifera_M_contig70348.16805.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70348.16805.1 vs. uniprot
Match: A0A7S1G6B3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6B3_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.060e-29
Identity = 57/123 (46.34%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 FRRLLTSGAVFLKHGRHGSPHPRFVWCSADLRTIYWRAVGETAVRGALQASDVVQVRPGRTTPVFQRSS-KAGREDASFSLITSSRTLDLEVELLGEPVAFGARPAEAKARDVWVRAFEFLLK 366
            + +LLT G +FLKHGR G+PHPR VW   DLRT+ WR        G L  + +  V  GR TPVF+R+  +A R+ A  SL+ + R+LDLEVE +GE +A G  P E + RD WV A  +L++
Sbjct:   26 YTQLLTHGGLFLKHGRSGAPHPRCVWVDDDLRTVRWRDPEAVKAAGELSVTTITHVLAGRHTPVFRRNKGRADRDGACLSLVAADRSLDLEVECVGESLAAGVDPDELQLRDQWVAACRWLVE 148          
BLAST of mRNA_M-pyrifera_M_contig70348.16805.1 vs. uniprot
Match: A0A6G0XFW1_9STRA (Kinesin motor domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XFW1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.960e-18
Identity = 53/122 (43.44%), Postives = 72/122 (59.02%), Query Frame = 1
Query:   10 LLTSGAVFLKHGRHGSPHPRFVWCSADLRTIYWRAVGETAVRGA-LQASDVVQVRPGRTTPVFQRSSKAGREDASFSLI--TSSRTLDLEVELLGEPVAFGARPAEAKARDVWVRAFEFLLK 366
            LL  G++F+KHGR G+PHPRFVWCS DL+ + +R+VG +  +   +  S +  +  G+TT VFQR     R   SFSLI     RTLDLEV+  GE     A   + K  + W  A +FL+K
Sbjct:  570 LLRQGSIFIKHGRQGNPHPRFVWCSPDLQYLNYRSVGGSPAQSIQIPTSSLQSLVQGQTTKVFQRKGDPARASFSFSLIYDDGKRTLDLEVDD-GE----SAERNKLKCAE-WTEALQFLIK 685          
BLAST of mRNA_M-pyrifera_M_contig70348.16805.1 vs. uniprot
Match: V9DV94_PHYPR (Kinesin-like protein n=12 Tax=Phytophthora TaxID=4783 RepID=V9DV94_PHYPR)

HSP 1 Score: 89.7 bits (221), Expect = 1.990e-18
Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = 1
Query:   10 LLTSGAVFLKHGRHGSPHPRFVWCSADLRTIYWRAVGETAVRGALQASDVVQVRPGRTTPVFQRSSKAGREDASFSL-ITSSRTLDLEVELLGEPVAFGARPAEAKA-RDVWVRAFEFLLK 366
            LL +G++F+K+GR+G PH RFVWCS DL  +++R V  T  +  +    +V +  G+ T VF+R+ +  R+   FS+    +RTLDLEV       A G  P   KA R+ WV A +FL+K
Sbjct:  685 LLRNGSLFVKYGRYGKPHVRFVWCSTDLEYLHYRLVNSTVPKATIPTRSIVGICIGQETRVFERAKQPERDPHCFSVEYEENRTLDLEV-------ADGESPEVKKAKRNDWVEALQFLIK 798          
BLAST of mRNA_M-pyrifera_M_contig70348.16805.1 vs. uniprot
Match: A0A6G0PCU2_9STRA (Kinesin-like protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6G0PCU2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 9.410e-18
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   10 LLTSGAVFLKHGRHGSPHPRFVWCSADLRTIYWRAVGETAVRGALQASDVVQVRPGRTTPVFQRSSKAGREDASFSL-ITSSRTLDLEVELLGEPVAFGARPAEAKA-RDVWVRAFEFLLK 366
            LL +G++F+K+GR+G PH RFVWCSADL  + +R V  T  +  +    +V+V  G+ T VF R+ +  R    FS+    +RTLDLE+       A G  P   K  R  WV A +FL+K
Sbjct:  696 LLRTGSLFVKYGRYGKPHVRFVWCSADLEYLNYRKVNSTVPKATIPTRSIVRVCIGQDTRVFDRAKQPARAPHCFSVEYEENRTLDLEI-------ADGESPEVKKTKRSDWVEALQFLIK 809          
BLAST of mRNA_M-pyrifera_M_contig70348.16805.1 vs. uniprot
Match: A0A8K1CHG3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHG3_PYTOL)

HSP 1 Score: 85.5 bits (210), Expect = 6.080e-17
Identity = 47/120 (39.17%), Postives = 70/120 (58.33%), Query Frame = 1
Query:   10 LLTSGAVFLKHGRHGSPHPRFVWCSADLRTIYWRAVGETAVRGALQASDVVQVRPGRTTPVFQRSSKAGREDASFSL-ITSSRTLDLEVELLGEPVAFGARPAEAKARDVWVRAFEFLLK 366
            LL +G++F+K+GR+G PH RFVWCSADL  +++R V     + ++    + ++  G+ T VF+R+ +  RE   FS+    +RTLDLEV   GE V       +   R  W  A +FLLK
Sbjct:  724 LLKNGSLFVKYGRYGKPHVRFVWCSADLEYLHYRQVSAQVAKASIPTRSIQRIVLGQATKVFERAKQESREPFCFSIEYEDTRTLDLEVTD-GENVE-----QKKLKRSEWTGALQFLLK 837          
BLAST of mRNA_M-pyrifera_M_contig70348.16805.1 vs. uniprot
Match: A0A5D6XZI0_9STRA (Kinesin motor domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZI0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.120e-16
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   10 LLTSGAVFLKHGRHGSPHPRFVWCSADLRTIYWRAVGETAVRGALQASDVVQVRPGRTTPVFQRSSKAGREDASFSL-ITSSRTLDLEVELLGEPVAFGARPAEAKARDVWVRAFEFLLK 366
            LL +G++F+K+GR G PH RFVWCS+DL  + +R V +   + ++    + +V  G+ T VF+R+ +  RE   FS+    SRTLDLE+   G+ V       + + R  WV A +FL+K
Sbjct:  597 LLKNGSLFVKYGRFGKPHVRFVWCSSDLEYLNYRTVSKPIPKASIPTRSISRVHLGQATKVFERAREEMREPFCFSIEYDDSRTLDLEIAD-GDSVEL-----KVQKRSEWVEALQFLVK 710          
BLAST of mRNA_M-pyrifera_M_contig70348.16805.1 vs. uniprot
Match: A0A485LA77_9STRA (Kinesin-like protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LA77_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.120e-16
Identity = 54/124 (43.55%), Postives = 70/124 (56.45%), Query Frame = 1
Query:   10 LLTSGAVFLKHGRHGSPHPRFVWCSADLRTIYWRAVGETAVRGA---LQASDVVQVRPGRTTPVFQRSSKAGREDASFSLI--TSSRTLDLEVELLGEPVAFGARPAEAKARDVWVRAFEFLLK 366
            LL  G++F+KHGR G+PHPRFVWCS DL+ + +RAVG  +   A   +  S +  +  G+TT VFQR     R   SFSL+     RTLDLEV+  GE     A     K  D W  A  +L+K
Sbjct:  633 LLKQGSIFIKHGRKGNPHPRFVWCSTDLQYLCYRAVGGGSSPTAPIEIPTSSIQSLVLGQTTKVFQRKGDPARAAYSFSLVYDDGKRTLDLEVDE-GE----SAGRNRQKCTD-WTDALLYLIK 750          
BLAST of mRNA_M-pyrifera_M_contig70348.16805.1 vs. uniprot
Match: A0A3F2RUK8_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUK8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.970e-16
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   10 LLTSGAVFLKHGRHGSPHPRFVWCSADLRTIYWRAVGETAVRGALQASDVVQVRPGRTTPVFQRSSKAGREDASFSL-ITSSRTLDLEVELLGEPVAFGARP-AEAKARDVWVRAFEFLLK 366
            LL +G++F+K+GR+G PH RFVWCSADL  + +RAV  T  +  +    + +V  G+ T VF+R+ +  R    FS+    +RTLDLE+       A G  P  +   R  W  A +FL+K
Sbjct:  399 LLRTGSLFVKYGRYGKPHVRFVWCSADLEYLNYRAVESTNPKATIPTRSIKRVCIGQETRVFERAKQPARAPHCFSIEYEENRTLDLEI-------ADGESPEVKQTKRGDWAEALQFLIK 512          
BLAST of mRNA_M-pyrifera_M_contig70348.16805.1 vs. uniprot
Match: A0A1V9ZMZ4_9STRA (Kinesin-like protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZMZ4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.060e-16
Identity = 48/121 (39.67%), Postives = 70/121 (57.85%), Query Frame = 1
Query:   10 LLTSGAVFLKHGRHGSPHPRFVWCSADLRTIYWRAVGETAVRGALQASDVVQVRPGRTTPVFQRSSKAGREDASFSLI--TSSRTLDLEVELLGEPVAFGARPAEAKARDVWVRAFEFLLK 366
            LL  G +F+KHGR G PH RFVWCS+DL+ + +R VG  +    +  + +  +  G+TT VFQR     R + SFS++   S R+LDLEV+  GE +         K  + W+ A +FL+K
Sbjct:  568 LLKQGGIFIKHGRQGKPHARFVWCSSDLQYLSYRPVGSQSPMIQIPTASLQALVCGQTTKVFQRKGDPLRSEFSFSILYDDSKRSLDLEVDE-GESIERN----RLKCNE-WMEALQFLIK 682          
BLAST of mRNA_M-pyrifera_M_contig70348.16805.1 vs. uniprot
Match: A0A662WYA6_9STRA (Kinesin-like protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WYA6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.100e-16
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   10 LLTSGAVFLKHGRHGSPHPRFVWCSADLRTIYWRAVGETAVRGALQASDVVQVRPGRTTPVFQRSSKAGREDASFSL-ITSSRTLDLEVELLGEPVAFGARPAEAKA-RDVWVRAFEFLLK 366
            LL +G++F+K+GR+G PH RFVWCSADL  + +R V     + ++    + +V  G+ T VF+R+ +  R    FS+    +RTLDLE+       A G  P   K+ R  W  A +FLLK
Sbjct:  701 LLRNGSLFVKYGRYGKPHVRFVWCSADLEYLNYRKVDSAVPKASIPTRTITRVCLGQDTRVFERAKQPARAPHCFSVEYEDNRTLDLEI-------ADGESPELKKSKRSDWAEALQFLLK 814          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70348.16805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1G6B3_9STRA2.060e-2946.34Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6G0XFW1_9STRA1.960e-1843.44Kinesin motor domain-containing protein n=1 Tax=Ap... [more]
V9DV94_PHYPR1.990e-1840.50Kinesin-like protein n=12 Tax=Phytophthora TaxID=4... [more]
A0A6G0PCU2_9STRA9.410e-1840.50Kinesin-like protein n=6 Tax=Phytophthora TaxID=47... [more]
A0A8K1CHG3_PYTOL6.080e-1739.17Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XZI0_9STRA1.120e-1638.33Kinesin motor domain-containing protein n=1 Tax=Py... [more]
A0A485LA77_9STRA1.120e-1643.55Kinesin-like protein n=1 Tax=Aphanomyces stellatus... [more]
A0A3F2RUK8_9STRA1.970e-1638.84Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A1V9ZMZ4_9STRA2.060e-1639.67Kinesin-like protein n=1 Tax=Thraustotheca clavata... [more]
A0A662WYA6_9STRA2.100e-1638.84Kinesin-like protein n=1 Tax=Nothophytophthora sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70348contigM-pyrifera_M_contig70348:48..413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue3.4e-16
Seed eggNOG ortholog4792.ETI30796
KEGG koko:K10397
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Kinesin motor domain
EggNOG OGs3QAX9@4776,COG5059@1,KOG4280@2759
COG Functional cat.Z
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.3819356-CDS-M-pyrifera_M_contig70348:47..4131622816596.3819356-CDS-M-pyrifera_M_contig70348:47..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70348 48..413 +
1692278067.9945836-CDS-M-pyrifera_M_contig70348:47..4131692278067.9945836-CDS-M-pyrifera_M_contig70348:47..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70348 48..413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70348.16805.1prot_M-pyrifera_M_contig70348.16805.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70348 48..413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70348.16805.1

>prot_M-pyrifera_M_contig70348.16805.1 ID=prot_M-pyrifera_M_contig70348.16805.1|Name=mRNA_M-pyrifera_M_contig70348.16805.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
FRRLLTSGAVFLKHGRHGSPHPRFVWCSADLRTIYWRAVGETAVRGALQA
SDVVQVRPGRTTPVFQRSSKAGREDASFSLITSSRTLDLEVELLGEPVAF
GARPAEAKARDVWVRAFEFLLK
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mRNA from alignment at M-pyrifera_M_contig70348:48..413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70348.16805.1 ID=mRNA_M-pyrifera_M_contig70348.16805.1|Name=mRNA_M-pyrifera_M_contig70348.16805.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig70348:48..413+ (Macrocystis pyrifera P11B4 male)
TTTCGTCGCTTGTTGACCTCAGGAGCTGTGTTCTTAAAGCATGGTCGTCA TGGTTCTCCACATCCTAGGTTTGTTTGGTGTTCTGCAGACTTGCGGACTA TATATTGGCGAGCAGTTGGAGAAACAGCTGTTCGTGGAGCCTTGCAAGCT AGTGATGTTGTGCAAGTTCGTCCTGGACGAACCACACCTGTATTCCAACG ATCAAGCAAAGCTGGGCGTGAAGATGCTTCGTTTTCTCTGATCACTTCCT CGCGAACATTGGATCTTGAAGTGGAACTGTTGGGTGAACCTGTAGCTTTT GGAGCAAGACCAGCAGAAGCAAAAGCAAGAGATGTGTGGGTGCGAGCATT TGAATTCCTCCTCAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70348:48..413+

>mRNA_M-pyrifera_M_contig70348.16805.1 ID=mRNA_M-pyrifera_M_contig70348.16805.1|Name=mRNA_M-pyrifera_M_contig70348.16805.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig70348:48..413+ (Macrocystis pyrifera P11B4 male)
TTTCGTCGCTTGTTGACCTCAGGAGCTGTGTTCTTAAAGCATGGTCGTCA
TGGTTCTCCACATCCTAGGTTTGTTTGGTGTTCTGCAGACTTGCGGACTA
TATATTGGCGAGCAGTTGGAGAAACAGCTGTTCGTGGAGCCTTGCAAGCT
AGTGATGTTGTGCAAGTTCGTCCTGGACGAACCACACCTGTATTCCAACG
ATCAAGCAAAGCTGGGCGTGAAGATGCTTCGTTTTCTCTGATCACTTCCT
CGCGAACATTGGATCTTGAAGTGGAACTGTTGGGTGAACCTGTAGCTTTT
GGAGCAAGACCAGCAGAAGCAAAAGCAAGAGATGTGTGGGTGCGAGCATT
TGAATTCCTCCTCAAATTTCGTCGCTTGTTGACCTCAGGAGCTGTGTTCT
TAAAGCATGGTCGTCATGGTTCTCCACATCCTAGGTTTGTTTGGTGTTCT
GCAGACTTGCGGACTATATATTGGCGAGCAGTTGGAGAAACAGCTGTTCG
TGGAGCCTTGCAAGCTAGTGATGTTGTGCAAGTTCGTCCTGGACGAACCA
CACCTGTATTCCAACGATCAAGCAAAGCTGGGCGTGAAGATGCTTCGTTT
TCTCTGATCACTTCCTCGCGAACATTGGATCTTGAAGTGGAACTGTTGGG
TGAACCTGTAGCTTTTGGAGCAAGACCAGCAGAAGCAAAAGCAAGAGATG
TGTGGGTGCGAGCATTTGAATTCCTCCTCAAA
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