mRNA_M-pyrifera_M_contig70343.16802.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70343.16802.1
Unique NamemRNA_M-pyrifera_M_contig70343.16802.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig70343.16802.1 vs. uniprot
Match: A0A7S4HSL6_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HSL6_9EUKA)

HSP 1 Score: 402 bits (1033), Expect = 2.570e-132
Identity = 220/265 (83.02%), Postives = 237/265 (89.43%), Query Frame = 1 
Query:    1 MGLNSAKSCAYSISSIVDAANSAAAICTNKAIQDEIVVRTRDIAVETANLLGYATTASHDTVAQVKMYECIESIQEQVQQILELLAAAGKLQQELDDAKADIERALEAPLAGGVAALRAEASTEASVQALSDRAKVLSTTNKNIANNACVTPERVGEYSKQAAELMCELLDATNIVAVQGGVDMNDPEYIAGTSDISEHKKQQLETLLAAAKGFAAATTNMIDLLKQIPQQEDDENLQFRLGMATRSADNALNAFMGAASSVDTE 795
            MGLNSAK CAYSISSIVD+ANSAAAICTNKAIQDEIVVRTRDIA+ETANLLGYATTASHD VAQ KMYECI+SI+EQVQQ+LELLAAAG LQQELDDAKA IE ALEAP+  G    R+E + E  +  L+DRAKVLSTT KNIANNACV PERVGE+SK+ A LMCELLDATNI+AVQ GVDMNDP YIAG +DISEHKKQQ+E LLAAAKGFAAATTNMIDLLKQIPQQEDDENLQFRL MATRSADNALNAFM A+S+VDTE
Sbjct:  184 MGLNSAKQCAYSISSIVDSANSAAAICTNKAIQDEIVVRTRDIAIETANLLGYATTASHDAVAQQKMYECIDSIKEQVQQMLELLAAAGALQQELDDAKAYIEEALEAPMNAGPTT-RSEKNVEQCMDTLNDRAKVLSTTIKNIANNACVVPERVGEFSKETASLMCELLDATNIIAVQSGVDMNDPAYIAGATDISEHKKQQIEGLLAAAKGFAAATTNMIDLLKQIPQQEDDENLQFRLSMATRSADNALNAFMSASSNVDTE 447
[Close]
BLAST of mRNA_M-pyrifera_M_contig70343.16802.1 vs. uniprot
Match: A0A7S4HSF4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HSF4_9EUKA)

HSP 1 Score: 357 bits (916), Expect = 1.180e-116
Identity = 193/264 (73.11%), Postives = 229/264 (86.74%), Query Frame = 1 
Query:    1 MGLNSAKSCAYSISSIVDAANSAAAICTNKAIQDEIVVRTRDIAVETANLLGYATTASHDTVAQVKMYECIESIQEQVQQILELLAAAGKLQQELDDAKADIERALEAPLAGGVAALRAEASTEASVQALSDRAKVLSTTNKNIANNACVTPERVGEYSKQAAELMCELLDATNIVAVQGGVDMNDPEYIAGTSDISEHKKQQLETLLAAAKGFAAATTNMIDLLKQIPQQEDDENLQFRLGMATRSADNALNAFMGAASSVDT 792
            MGL+SA+ CAY+ISSIVDAANSAAA+CTN+AIQDEIVVRTRDIAV+TANLLG+ATTASHD  AQ  MYE IE IQEQV++ILE+LAA+G+LQQE+D+AKA IE ALE   A   A +  E   E +++ LSDRAKVLSTT +NIANNACVTP++VG++S+ AA+LMCELLD T++VA Q G+D+NDPEY+AGT+DI+  KKQQ+E+LLAAAKGFAAATTNMIDLLKQIP+QEDDENLQFRL MATRSADNALNAF  A + VDT
Sbjct:  117 MGLHSARQCAYTISSIVDAANSAAAVCTNRAIQDEIVVRTRDIAVDTANLLGHATTASHDKAAQTSMYEVIEDIQEQVKEILEILAASGELQQEMDEAKASIEMALENSFAAPPAEI-VETEVEKTMEELSDRAKVLSTTIRNIANNACVTPDQVGKFSQDAAQLMCELLDGTSLVAYQSGIDINDPEYLAGTADINPRKKQQVESLLAAAKGFAAATTNMIDLLKQIPRQEDDENLQFRLSMATRSADNALNAFNCATADVDT 379
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70343.16802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4HSL6_9EUKA2.570e-13283.02Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4HSF4_9EUKA1.180e-11673.11Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70343contigM-pyrifera_M_contig70343:334..1131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size798
Cds size798
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.2428918-CDS-M-pyrifera_M_contig70343:333..11311622816596.2428918-CDS-M-pyrifera_M_contig70343:333..1131Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70343 334..1131 +
1692278067.9406862-CDS-M-pyrifera_M_contig70343:333..11311692278067.9406862-CDS-M-pyrifera_M_contig70343:333..1131Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70343 334..1131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70343.16802.1prot_M-pyrifera_M_contig70343.16802.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70343 334..1131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70343.16802.1

>prot_M-pyrifera_M_contig70343.16802.1 ID=prot_M-pyrifera_M_contig70343.16802.1|Name=mRNA_M-pyrifera_M_contig70343.16802.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=266bp
MGLNSAKSCAYSISSIVDAANSAAAICTNKAIQDEIVVRTRDIAVETANL
LGYATTASHDTVAQVKMYECIESIQEQVQQILELLAAAGKLQQELDDAKA
DIERALEAPLAGGVAALRAEASTEASVQALSDRAKVLSTTNKNIANNACV
TPERVGEYSKQAAELMCELLDATNIVAVQGGVDMNDPEYIAGTSDISEHK
KQQLETLLAAAKGFAAATTNMIDLLKQIPQQEDDENLQFRLGMATRSADN
ALNAFMGAASSVDTEE
back to top

mRNA from alignment at M-pyrifera_M_contig70343:334..1131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70343.16802.1 ID=mRNA_M-pyrifera_M_contig70343.16802.1|Name=mRNA_M-pyrifera_M_contig70343.16802.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig70343:334..1131+ (Macrocystis pyrifera P11B4 male)
ATGGGCCTGAACAGCGCCAAGTCGTGCGCCTACTCGATCTCGTCGATCGT
GGACGCGGCGAACAGCGCGGCGGCGATCTGCACCAACAAGGCGATCCAGG
ACGAGATCGTGGTGCGGACGCGCGACATCGCGGTGGAGACGGCGAACCTG
CTGGGCTACGCGACGACGGCGTCGCACGACACGGTGGCGCAGGTGAAGAT
GTACGAGTGCATCGAGTCGATCCAGGAGCAGGTGCAGCAGATCCTGGAGC
TGCTGGCGGCGGCCGGCAAGCTGCAGCAGGAGCTGGACGACGCCAAGGCG
GACATCGAGCGCGCGCTGGAGGCGCCGCTGGCGGGCGGCGTGGCGGCGCT
GCGGGCCGAGGCCAGCACGGAGGCGAGCGTGCAGGCGCTGAGCGACCGCG
CCAAGGTGCTCTCGACGACGAACAAGAACATCGCGAACAACGCCTGCGTG
ACGCCGGAGCGGGTGGGCGAGTACTCGAAGCAGGCGGCCGAGCTGATGTG
CGAGCTGCTGGACGCGACCAACATCGTGGCGGTGCAGGGCGGCGTGGACA
TGAACGACCCCGAGTACATCGCCGGCACGTCGGACATCTCGGAGCACAAG
AAGCAGCAGCTGGAGACGCTGCTGGCGGCGGCCAAGGGCTTCGCGGCGGC
CACGACCAACATGATCGACCTCCTCAAGCAGATCCCGCAGCAGGAGGACG
ACGAGAACCTCCAGTTCCGGCTGGGCATGGCGACGCGGTCGGCCGACAAC
GCGCTCAACGCCTTCATGGGCGCCGCCTCCTCGGTCGACACGGAGGAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig70343:334..1131+

>mRNA_M-pyrifera_M_contig70343.16802.1 ID=mRNA_M-pyrifera_M_contig70343.16802.1|Name=mRNA_M-pyrifera_M_contig70343.16802.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1596bp|location=Sequence derived from alignment at M-pyrifera_M_contig70343:334..1131+ (Macrocystis pyrifera P11B4 male)
ATGGGCCTGAACAGCGCCAAGTCGTGCGCCTACTCGATCTCGTCGATCGT
GGACGCGGCGAACAGCGCGGCGGCGATCTGCACCAACAAGGCGATCCAGG
ACGAGATCGTGGTGCGGACGCGCGACATCGCGGTGGAGACGGCGAACCTG
CTGGGCTACGCGACGACGGCGTCGCACGACACGGTGGCGCAGGTGAAGAT
GTACGAGTGCATCGAGTCGATCCAGGAGCAGGTGCAGCAGATCCTGGAGC
TGCTGGCGGCGGCCGGCAAGCTGCAGCAGGAGCTGGACGACGCCAAGGCG
GACATCGAGCGCGCGCTGGAGGCGCCGCTGGCGGGCGGCGTGGCGGCGCT
GCGGGCCGAGGCCAGCACGGAGGCGAGCGTGCAGGCGCTGAGCGACCGCG
CCAAGGTGCTCTCGACGACGAACAAGAACATCGCGAACAACGCCTGCGTG
ACGCCGGAGCGGGTGGGCGAGTACTCGAAGCAGGCGGCCGAGCTGATGTG
CGAGCTGCTGGACGCGACCAACATCGTGGCGGTGCAGGGCGGCGTGGACA
TGAACGACCCCGAGTACATCGCCGGCACGTCGGACATCTCGGAGCACAAG
AAGCAGCAGCTGGAGACGCTGCTGGCGGCGGCCAAGGGCTTCGCGGCGGC
CACGACCAACATGATCGACCTCCTCAAGCAGATCCCGCAGCAGGAGGACG
ACGAGAACCTCCAGTTCCGGCTGGGCATGGCGACGCGGTCGGCCGACAAC
GCGCTCAACGCCTTCATGGGCGCCGCCTCCTCGGTCGACACGGAGGAGAT
GGGCCTGAACAGCGCCAAGTCGTGCGCCTACTCGATCTCGTCGATCGTGG
ACGCGGCGAACAGCGCGGCGGCGATCTGCACCAACAAGGCGATCCAGGAC
GAGATCGTGGTGCGGACGCGCGACATCGCGGTGGAGACGGCGAACCTGCT
GGGCTACGCGACGACGGCGTCGCACGACACGGTGGCGCAGGTGAAGATGT
ACGAGTGCATCGAGTCGATCCAGGAGCAGGTGCAGCAGATCCTGGAGCTG
CTGGCGGCGGCCGGCAAGCTGCAGCAGGAGCTGGACGACGCCAAGGCGGA
CATCGAGCGCGCGCTGGAGGCGCCGCTGGCGGGCGGCGTGGCGGCGCTGC
GGGCCGAGGCCAGCACGGAGGCGAGCGTGCAGGCGCTGAGCGACCGCGCC
AAGGTGCTCTCGACGACGAACAAGAACATCGCGAACAACGCCTGCGTGAC
GCCGGAGCGGGTGGGCGAGTACTCGAAGCAGGCGGCCGAGCTGATGTGCG
AGCTGCTGGACGCGACCAACATCGTGGCGGTGCAGGGCGGCGTGGACATG
AACGACCCCGAGTACATCGCCGGCACGTCGGACATCTCGGAGCACAAGAA
GCAGCAGCTGGAGACGCTGCTGGCGGCGGCCAAGGGCTTCGCGGCGGCCA
CGACCAACATGATCGACCTCCTCAAGCAGATCCCGCAGCAGGAGGACGAC
GAGAACCTCCAGTTCCGGCTGGGCATGGCGACGCGGTCGGCCGACAACGC
GCTCAACGCCTTCATGGGCGCCGCCTCCTCGGTCGACACGGAGGAG
back to top