mRNA_M-pyrifera_M_contig70342.16801.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70342.16801.1
Unique NamemRNA_M-pyrifera_M_contig70342.16801.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70342.16801.1 vs. uniprot
Match: A0A6H5JMY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMY3_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 7.760e-18
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 AVGKQKAAEERKQKNQTRADELAKGRQARADAKAAAVAQAAIDRKEKQEGIASRIEAS 174
            A+ KQKA +ERK+KNQ RADELAKGRQARADAKAAA+AQAAIDRKEKQEGIA RIEA+
Sbjct:  154 ALNKQKATQERKEKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAA 211
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BLAST of mRNA_M-pyrifera_M_contig70342.16801.1 vs. uniprot
Match: D8LKJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ5_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.440e-17
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 AVGKQKAAEERKQKNQTRADELAKGRQARADAKAAAVAQAAIDRKEKQEGIASRIEAS 174
            A+ KQKA +ERK KNQ RADELAKGRQARADAKAAA+AQAAIDRKEKQEGIA RIEA+
Sbjct:  154 ALNKQKATQERKDKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAA 211
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70342.16801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMY3_9PHAE7.760e-1884.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKJ5_ECTSI1.440e-1784.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70342contigM-pyrifera_M_contig70342:206..391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.2032788-CDS-M-pyrifera_M_contig70342:205..3911622816596.2032788-CDS-M-pyrifera_M_contig70342:205..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70342 206..391 -
1692278067.9307017-CDS-M-pyrifera_M_contig70342:205..3911692278067.9307017-CDS-M-pyrifera_M_contig70342:205..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70342 206..391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70342.16801.1prot_M-pyrifera_M_contig70342.16801.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70342 206..391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70342.16801.1

>prot_M-pyrifera_M_contig70342.16801.1 ID=prot_M-pyrifera_M_contig70342.16801.1|Name=mRNA_M-pyrifera_M_contig70342.16801.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
AVGKQKAAEERKQKNQTRADELAKGRQARADAKAAAVAQAAIDRKEKQEG
IASRIEASLRW*
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mRNA from alignment at M-pyrifera_M_contig70342:206..391-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70342.16801.1 ID=mRNA_M-pyrifera_M_contig70342.16801.1|Name=mRNA_M-pyrifera_M_contig70342.16801.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig70342:206..391- (Macrocystis pyrifera P11B4 male)
GCAGTGGGCAAGCAGAAGGCGGCGGAGGAGCGCAAGCAGAAGAACCAGAC
GAGGGCGGACGAGCTCGCCAAGGGCAGGCAGGCCAGGGCGGACGCGAAGG
CGGCCGCGGTGGCGCAGGCCGCCATCGACCGCAAGGAGAAGCAGGAGGGC
ATAGCGTCGCGCATTGAGGCAAGTCTGCGGTGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70342:206..391-

>mRNA_M-pyrifera_M_contig70342.16801.1 ID=mRNA_M-pyrifera_M_contig70342.16801.1|Name=mRNA_M-pyrifera_M_contig70342.16801.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig70342:206..391- (Macrocystis pyrifera P11B4 male)
GCAGTGGGCAAGCAGAAGGCGGCGGAGGAGCGCAAGCAGAAGAACCAGAC
GAGGGCGGACGAGCTCGCCAAGGGCAGGCAGGCCAGGGCGGACGCGAAGG
CGGCCGCGGTGGCGCAGGCCGCCATCGACCGCAAGGAGAAGCAGGAGGGC
ATAGCGTCGCGCATTGAGGCAAGTCTGCGGTGGTGAGCAGTGGGCAAGCA
GAAGGCGGCGGAGGAGCGCAAGCAGAAGAACCAGACGAGGGCGGACGAGC
TCGCCAAGGGCAGGCAGGCCAGGGCGGACGCGAAGGCGGCCGCGGTGGCG
CAGGCCGCCATCGACCGCAAGGAGAAGCAGGAGGGCATAGCGTCGCGCAT
TGAGGCAAGTCTGCGGTGGTGA
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