mRNA_M-pyrifera_M_contig70326.16799.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70326.16799.1
Unique NamemRNA_M-pyrifera_M_contig70326.16799.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70326.16799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70326contigM-pyrifera_M_contig70326:457..1069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size613
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70326.16799.1prot_M-pyrifera_M_contig70326.16799.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70326 636..956 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.0658128-UTR-M-pyrifera_M_contig70326:456..6351622816596.0658128-UTR-M-pyrifera_M_contig70326:456..635Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70326 457..635 +
1692278067.8419094-UTR-M-pyrifera_M_contig70326:456..6351692278067.8419094-UTR-M-pyrifera_M_contig70326:456..635Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70326 457..635 +
1622816596.0896666-UTR-M-pyrifera_M_contig70326:956..10691622816596.0896666-UTR-M-pyrifera_M_contig70326:956..1069Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70326 957..1069 +
1692278067.8678784-UTR-M-pyrifera_M_contig70326:956..10691692278067.8678784-UTR-M-pyrifera_M_contig70326:956..1069Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70326 957..1069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.0788941-CDS-M-pyrifera_M_contig70326:635..9561622816596.0788941-CDS-M-pyrifera_M_contig70326:635..956Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70326 636..956 +
1692278067.85189-CDS-M-pyrifera_M_contig70326:635..9561692278067.85189-CDS-M-pyrifera_M_contig70326:635..956Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70326 636..956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70326.16799.1

>prot_M-pyrifera_M_contig70326.16799.1 ID=prot_M-pyrifera_M_contig70326.16799.1|Name=mRNA_M-pyrifera_M_contig70326.16799.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MTKSPARQQTAGQLLCNSSTFPCFTCLPAPSRAMPTSYCCHSLRAITRNS
HNGTAELPSTTTINHFFSAFKTLHNNQPTNAPHLPLPANHGGCHYHIPIA
IRRYAV*
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mRNA from alignment at M-pyrifera_M_contig70326:457..1069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70326.16799.1 ID=mRNA_M-pyrifera_M_contig70326.16799.1|Name=mRNA_M-pyrifera_M_contig70326.16799.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=613bp|location=Sequence derived from alignment at M-pyrifera_M_contig70326:457..1069+ (Macrocystis pyrifera P11B4 male)
GTGTGAACTAAGGTGAGACCGTCATCAACAATTAACTTTGTAAGAAAATC
CGATTAGAATTATAACACACCGTTTTTAATGATATTCGCTATTCGAGTTC
CGCCCACTCAACACATTTTTTACGATAGCTTTAATCGGAGTTCCGCAACA
AGCCGCCCTGCCTCTGACTATTAGCAAAAATGACGAAAAGTCCGGCCAGG
CAACAAACTGCTGGCCAGCTACTATGCAACAGCAGCACGTTTCCGTGTTT
TACCTGTCTGCCAGCACCGTCTCGTGCTATGCCCACCTCGTATTGCTGCC
ACTCACTACGAGCAATCACGCGAAACTCACACAACGGAACTGCTGAGCTG
CCATCAACCACCACAATCAACCATTTCTTCAGCGCTTTCAAAACCCTACA
CAACAACCAACCAACCAACGCGCCCCACTTGCCTCTGCCGGCAAACCACG
GAGGGTGTCACTATCATATTCCAATTGCCATCCGACGATATGCAGTGTGA
GTGACACGAACTCACGACACAAAACTAAACCTCGAAGTAACAGGGGGGAA
AACAGACCACTTGAAAACTGAAACTTGAAGCTGGACAAACAATTTTACCC
CTACACGCTACGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70326:457..1069+

>mRNA_M-pyrifera_M_contig70326.16799.1 ID=mRNA_M-pyrifera_M_contig70326.16799.1|Name=mRNA_M-pyrifera_M_contig70326.16799.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig70326:457..1069+ (Macrocystis pyrifera P11B4 male)
ATGACGAAAAGTCCGGCCAGGCAACAAACTGCTGGCCAGCTACTATGCAA
CAGCAGCACGTTTCCGTGTTTTACCTGTCTGCCAGCACCGTCTCGTGCTA
TGCCCACCTCGTATTGCTGCCACTCACTACGAGCAATCACGCGAAACTCA
CACAACGGAACTGCTGAGCTGCCATCAACCACCACAATCAACCATTTCTT
CAGCGCTTTCAAAACCCTACACAACAACCAACCAACCAACGCGCCCCACT
TGCCTCTGCCGGCAAACCACGGAGGGTGTCACTATCATATTCCAATTGCC
ATCCGACGATATGCAGTGTGAATGACGAAAAGTCCGGCCAGGCAACAAAC
TGCTGGCCAGCTACTATGCAACAGCAGCACGTTTCCGTGTTTTACCTGTC
TGCCAGCACCGTCTCGTGCTATGCCCACCTCGTATTGCTGCCACTCACTA
CGAGCAATCACGCGAAACTCACACAACGGAACTGCTGAGCTGCCATCAAC
CACCACAATCAACCATTTCTTCAGCGCTTTCAAAACCCTACACAACAACC
AACCAACCAACGCGCCCCACTTGCCTCTGCCGGCAAACCACGGAGGGTGT
CACTATCATATTCCAATTGCCATCCGACGATATGCAGTGTGA
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