mRNA_M-pyrifera_M_contig70311.16798.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70311.16798.1
Unique NamemRNA_M-pyrifera_M_contig70311.16798.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70311.16798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70311contigM-pyrifera_M_contig70311:12..689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size678
Cds size678
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.029756-CDS-M-pyrifera_M_contig70311:11..6891622816596.029756-CDS-M-pyrifera_M_contig70311:11..689Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70311 12..689 +
1692278067.8308399-CDS-M-pyrifera_M_contig70311:11..6891692278067.8308399-CDS-M-pyrifera_M_contig70311:11..689Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70311 12..689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70311.16798.1prot_M-pyrifera_M_contig70311.16798.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70311 12..689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70311.16798.1

>prot_M-pyrifera_M_contig70311.16798.1 ID=prot_M-pyrifera_M_contig70311.16798.1|Name=mRNA_M-pyrifera_M_contig70311.16798.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=226bp
LVELVEGSDERLFAMAFVSEDVPPERRGFRQALSATLAELDAALGNRFAF
GVVDPAGDADLAAFAAARGVAPFTTVAHEGDRQERRELWASVVLEWGAHG
RTRLIDLGPDDLPHLQALMRAELAELRAPSEPTIVLLAPAGSVPDLAAAG
DTDPLGFRFGALPTALDAIATVVVADPAAVDFDPETFQAGELIFWLDPGA
GAGDLAPHVERAAEAGRALVLAGSPF
back to top

mRNA from alignment at M-pyrifera_M_contig70311:12..689+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70311.16798.1 ID=mRNA_M-pyrifera_M_contig70311.16798.1|Name=mRNA_M-pyrifera_M_contig70311.16798.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig70311:12..689+ (Macrocystis pyrifera P11B4 male)
CTGGTCGAGCTGGTCGAGGGCTCGGACGAGCGCCTGTTCGCGATGGCCTT
CGTCTCCGAGGACGTGCCCCCCGAGCGCCGCGGCTTCCGACAAGCGCTCT
CCGCCACGCTCGCGGAGCTGGACGCCGCGCTCGGCAACCGCTTTGCGTTC
GGCGTCGTCGACCCCGCCGGCGACGCGGACCTCGCGGCCTTTGCCGCCGC
GCGCGGGGTCGCGCCGTTCACGACCGTGGCCCACGAGGGCGACCGCCAGG
AGCGCCGTGAGCTGTGGGCGTCGGTCGTGCTCGAGTGGGGCGCGCATGGG
CGCACGCGATTGATCGACCTCGGGCCGGACGACCTGCCGCACCTGCAGGC
GCTGATGCGTGCGGAGCTGGCCGAGCTGCGCGCACCGAGCGAACCCACCA
TCGTGCTGCTCGCGCCGGCCGGCAGCGTGCCCGACCTGGCCGCTGCCGGC
GACACGGACCCGCTCGGCTTCCGCTTCGGCGCGCTCCCGACGGCCCTCGA
TGCCATCGCGACGGTCGTGGTCGCGGACCCCGCCGCAGTCGACTTCGACC
CCGAGACCTTCCAAGCCGGCGAGCTGATCTTCTGGCTCGACCCCGGCGCC
GGCGCCGGCGACCTCGCGCCCCACGTGGAGCGCGCTGCGGAGGCTGGCCG
CGCGCTGGTGCTCGCCGGCTCCCCGTTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig70311:12..689+

>mRNA_M-pyrifera_M_contig70311.16798.1 ID=mRNA_M-pyrifera_M_contig70311.16798.1|Name=mRNA_M-pyrifera_M_contig70311.16798.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1356bp|location=Sequence derived from alignment at M-pyrifera_M_contig70311:12..689+ (Macrocystis pyrifera P11B4 male)
CTGGTCGAGCTGGTCGAGGGCTCGGACGAGCGCCTGTTCGCGATGGCCTT
CGTCTCCGAGGACGTGCCCCCCGAGCGCCGCGGCTTCCGACAAGCGCTCT
CCGCCACGCTCGCGGAGCTGGACGCCGCGCTCGGCAACCGCTTTGCGTTC
GGCGTCGTCGACCCCGCCGGCGACGCGGACCTCGCGGCCTTTGCCGCCGC
GCGCGGGGTCGCGCCGTTCACGACCGTGGCCCACGAGGGCGACCGCCAGG
AGCGCCGTGAGCTGTGGGCGTCGGTCGTGCTCGAGTGGGGCGCGCATGGG
CGCACGCGATTGATCGACCTCGGGCCGGACGACCTGCCGCACCTGCAGGC
GCTGATGCGTGCGGAGCTGGCCGAGCTGCGCGCACCGAGCGAACCCACCA
TCGTGCTGCTCGCGCCGGCCGGCAGCGTGCCCGACCTGGCCGCTGCCGGC
GACACGGACCCGCTCGGCTTCCGCTTCGGCGCGCTCCCGACGGCCCTCGA
TGCCATCGCGACGGTCGTGGTCGCGGACCCCGCCGCAGTCGACTTCGACC
CCGAGACCTTCCAAGCCGGCGAGCTGATCTTCTGGCTCGACCCCGGCGCC
GGCGCCGGCGACCTCGCGCCCCACGTGGAGCGCGCTGCGGAGGCTGGCCG
CGCGCTGGTGCTCGCCGGCTCCCCGTTCCTGGTCGAGCTGGTCGAGGGCT
CGGACGAGCGCCTGTTCGCGATGGCCTTCGTCTCCGAGGACGTGCCCCCC
GAGCGCCGCGGCTTCCGACAAGCGCTCTCCGCCACGCTCGCGGAGCTGGA
CGCCGCGCTCGGCAACCGCTTTGCGTTCGGCGTCGTCGACCCCGCCGGCG
ACGCGGACCTCGCGGCCTTTGCCGCCGCGCGCGGGGTCGCGCCGTTCACG
ACCGTGGCCCACGAGGGCGACCGCCAGGAGCGCCGTGAGCTGTGGGCGTC
GGTCGTGCTCGAGTGGGGCGCGCATGGGCGCACGCGATTGATCGACCTCG
GGCCGGACGACCTGCCGCACCTGCAGGCGCTGATGCGTGCGGAGCTGGCC
GAGCTGCGCGCACCGAGCGAACCCACCATCGTGCTGCTCGCGCCGGCCGG
CAGCGTGCCCGACCTGGCCGCTGCCGGCGACACGGACCCGCTCGGCTTCC
GCTTCGGCGCGCTCCCGACGGCCCTCGATGCCATCGCGACGGTCGTGGTC
GCGGACCCCGCCGCAGTCGACTTCGACCCCGAGACCTTCCAAGCCGGCGA
GCTGATCTTCTGGCTCGACCCCGGCGCCGGCGCCGGCGACCTCGCGCCCC
ACGTGGAGCGCGCTGCGGAGGCTGGCCGCGCGCTGGTGCTCGCCGGCTCC
CCGTTC
back to top