mRNA_M-pyrifera_M_contig70293.16796.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70293.16796.1
Unique NamemRNA_M-pyrifera_M_contig70293.16796.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig70293.16796.1 vs. uniprot
Match: D7G183_ECTSI (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G183_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 2.000e-32
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 LRLNNIGPNEGATRDRKRVGRGIGSGTGKTCGKGHKGSKARKGTKRPGFEGGQTPFHRRIPKRGFKNG 204
            LRLNN+ PN+GA RDRKRVGRG GSGTGKTCGKGHKGSKARKGTKR GFEGGQTPFHRRIPKRGFKNG
Sbjct:   49 LRLNNLAPNDGARRDRKRVGRGNGSGTGKTCGKGHKGSKARKGTKRIGFEGGQTPFHRRIPKRGFKNG 116
[Close]
BLAST of mRNA_M-pyrifera_M_contig70293.16796.1 vs. uniprot
Match: A0A2D7UD45_9PROT (50S ribosomal protein L15 n=4 Tax=SAR116 cluster TaxID=62654 RepID=A0A2D7UD45_9PROT)

HSP 1 Score: 92.8 bits (229), Expect = 3.070e-22
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 LRLNNIGPNEGATRDRKRVGRGIGSGTGKTCGKGHKGSKARKGTKRPGFEGGQTPFHRRIPKRGFKN 201
            ++LN I  N G+TRDRKRVGRGIGSGTGKT G GHKG KAR G    GFEGGQ P HRR+PKRGF N
Sbjct:    1 MKLNAISDNPGSTRDRKRVGRGIGSGTGKTSGSGHKGQKARSGVSIKGFEGGQMPIHRRLPKRGFTN 67
[Close]
BLAST of mRNA_M-pyrifera_M_contig70293.16796.1 vs. uniprot
Match: A0A2E1D016_9PROT (50S ribosomal protein L15 n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E1D016_9PROT)

HSP 1 Score: 92.4 bits (228), Expect = 3.550e-22
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 LRLNNIGPNEGATRDRKRVGRGIGSGTGKTCGKGHKGSKARKGT-KRPGFEGGQTPFHRRIPKRGFKN 201
            +RLN+I P+ GAT++RKRVGRGIGSGTGKTCG+GHKG K+R G   + GFEGGQ P HRR+PKRGFK+
Sbjct:    1 MRLNSIKPSVGATKNRKRVGRGIGSGTGKTCGRGHKGQKSRAGGFHKVGFEGGQMPLHRRLPKRGFKS 68
[Close]
BLAST of mRNA_M-pyrifera_M_contig70293.16796.1 vs. uniprot
Match: A0A3D1G366_9PROT (50S ribosomal protein L15 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A3D1G366_9PROT)

HSP 1 Score: 92.8 bits (229), Expect = 3.950e-22
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 LRLNNIGPNEGATRDRKRVGRGIGSGTGKTCGKGHKGSKARKGTKRPGFEGGQTPFHRRIPKRGFKN 201
            ++LN I  N GA R+RKRVGRGIGSGTGKT G GHKG KAR G    GFEGGQ P HRR+PKRGFKN
Sbjct:    1 MKLNEISDNSGARRNRKRVGRGIGSGTGKTSGSGHKGQKARSGVSINGFEGGQMPIHRRLPKRGFKN 67
[Close]
BLAST of mRNA_M-pyrifera_M_contig70293.16796.1 vs. uniprot
Match: A0A2E7V5X7_9PROT (50S ribosomal protein L15 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7V5X7_9PROT)

HSP 1 Score: 92.0 bits (227), Expect = 6.160e-22
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 LRLNNIGPNEGATRDRKRVGRGIGSGTGKTCGKGHKGSKARKGTKRPGFEGGQTPFHRRIPKRGFKNGY 207
            +RLN I  NEGAT++RKRVGRG GSGTGKT G+GHKG K+R G    GFEGGQ P +RR+PKRGFKN +
Sbjct:    1 MRLNEISDNEGATKNRKRVGRGAGSGTGKTSGRGHKGQKSRAGATINGFEGGQMPIYRRLPKRGFKNPF 69
[Close]
BLAST of mRNA_M-pyrifera_M_contig70293.16796.1 vs. uniprot
Match: A0A3M2AHE2_9BACT (50S ribosomal protein L15 n=1 Tax=Aquificae bacterium TaxID=2202151 RepID=A0A3M2AHE2_9BACT)

HSP 1 Score: 91.7 bits (226), Expect = 6.590e-22
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 LRLNNIGPNEGATRDRKRVGRGIGSGTGKTCGKGHKGSKARKGTKR--PGFEGGQTPFHRRIPKRGFK 198
            ++L+ + PNEGAT++RKRVGRGIGSG GKTCGKGHKG K+R G ++    FEGGQTP H+RIPKRGF+
Sbjct:    1 MKLHELAPNEGATKERKRVGRGIGSGHGKTCGKGHKGQKSRSGDRKLPSWFEGGQTPLHKRIPKRGFR 68
[Close]
BLAST of mRNA_M-pyrifera_M_contig70293.16796.1 vs. uniprot
Match: UPI0014243B0E (50S ribosomal protein L15 n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0014243B0E)

HSP 1 Score: 91.3 bits (225), Expect = 1.580e-21
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 LRLNNIGPNEGATRDRKRVGRGIGSGTGKTCGKGHKGSKARKGTKRPGFEGGQTPFHRRIPKRGFKNGYVR 213
            ++LN +  N+GAT+ RKR+GRGIGSGTGKT G+GHKG KAR G    GFEGGQ P HRR+PKRGF N + +
Sbjct:    1 MKLNQLSDNQGATKARKRIGRGIGSGTGKTSGQGHKGQKARSGVAIKGFEGGQMPLHRRLPKRGFNNIFAK 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig70293.16796.1 vs. uniprot
Match: A0A2D5XTI1_9PROT (50S ribosomal protein L15 n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2D5XTI1_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 1.620e-21
Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 LRLNNIGPNEGATRDRKRVGRGIGSGTGKTCGKGHKGSKARKGTKRPGFEGGQTPFHRRIPKRGFKN 201
            ++LN I  N GAT++RKRVGRGIGSGTGKT G GHKG KAR G    GFEGGQ P HRR+PKRGF N
Sbjct:    1 MKLNAISDNPGATKNRKRVGRGIGSGTGKTSGSGHKGQKARSGVSINGFEGGQMPIHRRLPKRGFNN 67
[Close]
BLAST of mRNA_M-pyrifera_M_contig70293.16796.1 vs. uniprot
Match: A0A432QL77_9DELT (50S ribosomal protein L15 n=2 Tax=Desulfobulbus sp. TaxID=895 RepID=A0A432QL77_9DELT)

HSP 1 Score: 90.5 bits (223), Expect = 1.780e-21
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 LRLNNIGPNEGATRDRKRVGRGIGSGTGKTCGKGHKGSKARKG-TKRPGFEGGQTPFHRRIPKRGFKNGYVR 213
            LRLNN+ P++GA + RKR+GRG GSG GKT G+GHKG+++R G T +PGFEGGQ P HRR+PKRGF N + R
Sbjct:    2 LRLNNLSPSKGARKSRKRIGRGPGSGFGKTAGRGHKGARSRSGYTAKPGFEGGQMPLHRRLPKRGFTNIFKR 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig70293.16796.1 vs. uniprot
Match: A0A7C2VFS6_9AQUI (50S ribosomal protein L15 n=2 Tax=Aquificaceae TaxID=64898 RepID=A0A7C2VFS6_9AQUI)

HSP 1 Score: 90.5 bits (223), Expect = 1.870e-21
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 LRLNNIGPNEGATRDRKRVGRGIGSGTGKTCGKGHKGSKARKGTKR--PGFEGGQTPFHRRIPKRGFK 198
            ++L+ + PNEGAT++++RVGRGIGSG GKTCGKGHKG K R G +R    FEGGQTP H+RIPKRGF+
Sbjct:    1 MKLHELAPNEGATKEKRRVGRGIGSGLGKTCGKGHKGQKTRSGDRRLPSWFEGGQTPLHKRIPKRGFR 68
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70293.16796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G183_ECTSI2.000e-3291.18Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A2D7UD45_9PROT3.070e-2271.6450S ribosomal protein L15 n=4 Tax=SAR116 cluster T... [more]
A0A2E1D016_9PROT3.550e-2270.5950S ribosomal protein L15 n=2 Tax=Proteobacteria T... [more]
A0A3D1G366_9PROT3.950e-2271.6450S ribosomal protein L15 n=3 Tax=Alphaproteobacte... [more]
A0A2E7V5X7_9PROT6.160e-2268.1250S ribosomal protein L15 n=1 Tax=Rhodospirillacea... [more]
A0A3M2AHE2_9BACT6.590e-2267.6550S ribosomal protein L15 n=1 Tax=Aquificae bacter... [more]
UPI0014243B0E1.580e-2163.3850S ribosomal protein L15 n=1 Tax=Pelagibius litor... [more]
A0A2D5XTI1_9PROT1.620e-2170.1550S ribosomal protein L15 n=6 Tax=Alphaproteobacte... [more]
A0A432QL77_9DELT1.780e-2163.8950S ribosomal protein L15 n=2 Tax=Desulfobulbus sp... [more]
A0A7C2VFS6_9AQUI1.870e-2166.1850S ribosomal protein L15 n=2 Tax=Aquificaceae Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70293contigM-pyrifera_M_contig70293:425..655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue1.8e-26
Seed eggNOG ortholog2880.D7G183
Preferred nameMRPL15
KEGG koko:K02876
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034097,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0070013,GO:0070125,GO:0070126,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990823,GO:1990830,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0200@1,KOG0846@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.9270759-CDS-M-pyrifera_M_contig70293:424..6551622816595.9270759-CDS-M-pyrifera_M_contig70293:424..655Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70293 425..655 -
1692278067.7695355-CDS-M-pyrifera_M_contig70293:424..6551692278067.7695355-CDS-M-pyrifera_M_contig70293:424..655Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70293 425..655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70293.16796.1prot_M-pyrifera_M_contig70293.16796.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70293 425..655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70293.16796.1

>prot_M-pyrifera_M_contig70293.16796.1 ID=prot_M-pyrifera_M_contig70293.16796.1|Name=mRNA_M-pyrifera_M_contig70293.16796.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
LRLNNIGPNEGATRDRKRVGRGIGSGTGKTCGKGHKGSKARKGTKRPGFE
GGQTPFHRRIPKRGFKNGYVRIRNAH*
back to top

mRNA from alignment at M-pyrifera_M_contig70293:425..655-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70293.16796.1 ID=mRNA_M-pyrifera_M_contig70293.16796.1|Name=mRNA_M-pyrifera_M_contig70293.16796.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig70293:425..655- (Macrocystis pyrifera P11B4 male)
CTGAGGCTGAATAATATAGGCCCCAACGAGGGTGCCACTCGAGACAGGAA
GCGTGTGGGCAGGGGTATCGGTTCCGGCACAGGAAAGACCTGCGGCAAGG
GCCACAAGGGTTCCAAGGCGCGAAAGGGCACCAAGAGGCCTGGGTTCGAG
GGCGGACAGACCCCCTTCCACCGAAGGATCCCCAAGCGTGGCTTTAAAAA
TGGGTACGTACGGATCAGAAATGCCCATTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig70293:425..655-

>mRNA_M-pyrifera_M_contig70293.16796.1 ID=mRNA_M-pyrifera_M_contig70293.16796.1|Name=mRNA_M-pyrifera_M_contig70293.16796.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig70293:425..655- (Macrocystis pyrifera P11B4 male)
CTGAGGCTGAATAATATAGGCCCCAACGAGGGTGCCACTCGAGACAGGAA
GCGTGTGGGCAGGGGTATCGGTTCCGGCACAGGAAAGACCTGCGGCAAGG
GCCACAAGGGTTCCAAGGCGCGAAAGGGCACCAAGAGGCCTGGGTTCGAG
GGCGGACAGACCCCCTTCCACCGAAGGATCCCCAAGCGTGGCTTTAAAAA
TGGGTACGTACGGATCAGAAATGCCCATTAACTGAGGCTGAATAATATAG
GCCCCAACGAGGGTGCCACTCGAGACAGGAAGCGTGTGGGCAGGGGTATC
GGTTCCGGCACAGGAAAGACCTGCGGCAAGGGCCACAAGGGTTCCAAGGC
GCGAAAGGGCACCAAGAGGCCTGGGTTCGAGGGCGGACAGACCCCCTTCC
ACCGAAGGATCCCCAAGCGTGGCTTTAAAAATGGGTACGTACGGATCAGA
AATGCCCATTAA
back to top