mRNA_M-pyrifera_M_contig70283.16795.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70283.16795.1
Unique NamemRNA_M-pyrifera_M_contig70283.16795.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70283.16795.1 vs. uniprot
Match: A0A813BU94_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BU94_9DINO)

HSP 1 Score: 103 bits (256), Expect = 1.920e-25
Identity = 57/96 (59.38%), Postives = 78/96 (81.25%), Query Frame = 1
Query:    7 KRSMLEERRRAEEHRMAARMDSEARWRRRMERSPFAVDQLAEHERVDEELRVKVKEEGRRERAIARRKEKVKTEIIIRALSEASDVEALREEKRAI 294
            K++ L ERRR EE +   +  +E RWRR+ME SPF VD +A+HER+DEE R+++KEE RRER + +RKEK+K EII++AL+E++D+EALREEKRAI
Sbjct:   12 KQAYLAERRRKEEKKRLTKEKAETRWRRKMENSPFLVDLVADHERIDEENRMRLKEEARRERLLNKRKEKIKNEIILKALAESTDLEALREEKRAI 107          
BLAST of mRNA_M-pyrifera_M_contig70283.16795.1 vs. uniprot
Match: A0A7S2V736_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V736_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.270e-19
Identity = 67/145 (46.21%), Postives = 86/145 (59.31%), Query Frame = 1
Query:    4 LKRSMLE----ERRRAEEHRMAARMDSEARWRRRMERSPFAVDQLAEHERVDEELRVKVKEEGRRERAIARRKEKVKTEIIIRALSEASDVEALREEKRAILQEEKRLRXXXXXXXXXXXXXXXXXXXXXXXXHRQRAKREFRRK 426
            +K+ MLE     RR+  E R   R D    W++R ++SPF VD +AE E++DEE RV++ EE RR  A A RKEK K EII++ALSEASD+EALR EKRAI +EEKRL+                         R++ K EFRRK
Sbjct:   57 VKQEMLETQESNRRKIYEQRRRKRQD----WQKRTQKSPFHVDLVAETEKIDEENRVRLAEERRRMHAAAMRKEKAKNEIILKALSEASDLEALRREKRAIHEEEKRLKALLDIEKTKAHRKQDLLAAQLGERQRKQTKSEFRRK 197          
BLAST of mRNA_M-pyrifera_M_contig70283.16795.1 vs. uniprot
Match: A0A7S3CZ70_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3CZ70_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 1.050e-18
Identity = 52/105 (49.52%), Postives = 78/105 (74.29%), Query Frame = 1
Query:    4 LKRSMLEERRRAEEHRMAARMDSEARWRRRMERSPFAVDQLAEHERVDEELRVKVKEEGRRERAIARRKEKVKTEIIIRALSEASDVEALREEKRAILQEEKRLR 318
            +K SML+ER+R EE +   +  +   W +R++ SPF VD  AE ER+DEE RV+++EE R+ + +  +KEKVKTEII+RAL+E ++++ LREEKR + +EEKRL+
Sbjct:   81 VKASMLDERQRFEELQKMKKTHTRRNWTKRLQNSPFLVDLNAESERIDEEHRVRLQEEARKVKELEAKKEKVKTEIILRALAEENEIQRLREEKRLLAEEEKRLK 185          
BLAST of mRNA_M-pyrifera_M_contig70283.16795.1 vs. uniprot
Match: A0A7S2SUX2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUX2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.150e-18
Identity = 51/105 (48.57%), Postives = 78/105 (74.29%), Query Frame = 1
Query:    4 LKRSMLEERRRAEEHRMAARMDSEARWRRRMERSPFAVDQLAEHERVDEELRVKVKEEGRRERAIARRKEKVKTEIIIRALSEASDVEALREEKRAILQEEKRLR 318
            +K+ M+EE  R  + +M AR   E +W ++M+ SPF V+ +AE ER +EE +V++ EE R++R I+RR+E  K +I++RAL E SD+EALR EKRAI++EE+RL+
Sbjct:   60 VKQRMMEEEARLRQQKMNARRRQEGKWNQKMQNSPFKVNLVAESERCEEEHKVRLTEEVRQQRQISRRQEAAKQDIVLRALQEESDLEALRREKRAIVEEERRLK 164          
BLAST of mRNA_M-pyrifera_M_contig70283.16795.1 vs. uniprot
Match: A0A7S4NTY6_GUITH (Hypothetical protein n=4 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S4NTY6_GUITH)

HSP 1 Score: 87.4 bits (215), Expect = 5.720e-18
Identity = 50/106 (47.17%), Postives = 78/106 (73.58%), Query Frame = 1
Query:    1 QLKRSMLEERRRAEEHRMAARMDSEARWRRRMERSPFAVDQLAEHERVDEELRVKVKEEGRRERAIARRKEKVKTEIIIRALSEASDVEALREEKRAILQEEKRLR 318
            +LKR + EE  R  + +   + +   +W +++++S F +DQ+AE ER+DEE RVK++EE RR +    RK+K+KTEII++AL+E++D+E LR+EKR I +EEKRLR
Sbjct:   80 ELKRQLEEENERKYKAKELQKKEMLLKWSKKLDKSSFLIDQVAESERIDEEQRVKLEEEARRAKLFEERKQKIKTEIILKALAESNDLEQLRQEKRLIQEEEKRLR 185          
BLAST of mRNA_M-pyrifera_M_contig70283.16795.1 vs. uniprot
Match: A0A7S3GYH4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYH4_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.770e-17
Identity = 51/104 (49.04%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    7 KRSMLEERRRAEEHRMAARMDSEARWRRRMERSPFAVDQLAEHERVDEELRVKVKEEGRRERAIARRKEKVKTEIIIRALSEASDVEALREEKRAILQEEKRLR 318
            K+ M E+R + E+   AAR++ + RW+ + + SPFAV+ +AE ER+ EE  +++KEE  R   +  RK+K K EII++ALSE SD+EALR EKRAI+ EE+RL+
Sbjct:   80 KQDMFEKRIQHEKLMQAARLERDQRWKSKTKHSPFAVNLVAEEERITEENTIRLKEENERREMMESRKQKAKNEIILKALSEFSDLEALRREKRAIMDEEQRLK 183          
BLAST of mRNA_M-pyrifera_M_contig70283.16795.1 vs. uniprot
Match: A0A7S0WBM1_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WBM1_9CRYP)

HSP 1 Score: 82.4 bits (202), Expect = 3.010e-16
Identity = 41/79 (51.90%), Postives = 65/79 (82.28%), Query Frame = 1
Query:   82 WRRRMERSPFAVDQLAEHERVDEELRVKVKEEGRRERAIARRKEKVKTEIIIRALSEASDVEALREEKRAILQEEKRLR 318
            W ++++RS F VDQ+AE ER+DEE RVK++EE +R +    RK+++KTEII++AL+E +D++ LR+EKR I++EE+RL+
Sbjct:  114 WSKKLDRSSFLVDQVAESERIDEEQRVKLEEEAKRAKLFEERKQRIKTEIILKALAETNDLDQLRQEKRLIVEEERRLK 192          
BLAST of mRNA_M-pyrifera_M_contig70283.16795.1 vs. uniprot
Match: W2QPH2_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QPH2_PHYPN)

HSP 1 Score: 81.6 bits (200), Expect = 4.040e-16
Identity = 49/106 (46.23%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    1 QLKRSMLEERRRAEEHRMAARMDSEARWRRRMERSPFAVDQLAEHERVDEELRVKVKEEGRRERAIARRKEKVKTEIIIRALSEASDVEALREEKRAILQEEKRLR 318
            Q+K ++ +E R    +++ AR     +W +RM RSPF V+ +A++ER+DEE R+++ E  RRER + RR ++ K+E+I++AL+E SD+E LR EKRAI+ EEKRL+
Sbjct:   76 QVKLALEQEERTRRLNKIRARRQHLEKWTQRMARSPFHVNLVADNERLDEEHRLRMMERARRERELERRAKEAKSEVILKALTETSDLELLRREKRAIIDEEKRLK 181          
BLAST of mRNA_M-pyrifera_M_contig70283.16795.1 vs. uniprot
Match: D0NLC9_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NLC9_PHYIT)

HSP 1 Score: 80.5 bits (197), Expect = 9.860e-16
Identity = 49/106 (46.23%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    1 QLKRSMLEERRRAEEHRMAARMDSEARWRRRMERSPFAVDQLAEHERVDEELRVKVKEEGRRERAIARRKEKVKTEIIIRALSEASDVEALREEKRAILQEEKRLR 318
            Q+K ++ +E R    +++ AR     +W +RM RSPF V+ +A++ER+DEE R+++ E  RRER + RR ++ K+E+I++AL+E SD+E LR EKRAI+ EEKRL+
Sbjct:   69 QVKLALEQEERTRRLNKIRARRQHLEKWTQRMARSPFHVNLVADNERLDEEHRLRMMECARRERELERRSKEAKSEVILKALTETSDLELLRREKRAIIDEEKRLK 174          
BLAST of mRNA_M-pyrifera_M_contig70283.16795.1 vs. uniprot
Match: T0PWI7_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PWI7_SAPDV)

HSP 1 Score: 80.5 bits (197), Expect = 1.070e-15
Identity = 52/109 (47.71%), Postives = 80/109 (73.39%), Query Frame = 1
Query:    1 QLKRSMLEE---RRRAEEHRMAARMDSEARWRRRMERSPFAVDQLAEHERVDEELRVKVKEEGRRERAIARRKEKVKTEIIIRALSEASDVEALREEKRAILQEEKRLR 318
            Q+K SMLEE   RR  +E R  A ++    W+ ++ +SPF V+ +A++ER+DEE RV++ EE RR RA+ ++ ++VK +II++AL E SD++ALR EKR I++EEKRL+
Sbjct:   75 QVKSSMLEEEKLRRLQKEKRRQANIEK---WQSKLAKSPFKVNLVADNERLDEENRVRLAEEARRIRALEKKTKQVKNDIILKALQETSDLDALRREKRVIMEEEKRLK 180          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70283.16795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813BU94_9DINO1.920e-2559.38Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7S2V736_9STRA3.270e-1946.21Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3CZ70_9EUKA1.050e-1849.52Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A7S2SUX2_9STRA1.150e-1848.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4NTY6_GUITH5.720e-1847.17Hypothetical protein n=4 Tax=Geminigeraceae TaxID=... [more]
A0A7S3GYH4_9STRA3.770e-1749.04Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0WBM1_9CRYP3.010e-1651.90Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
W2QPH2_PHYPN4.040e-1646.23Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
D0NLC9_PHYIT9.860e-1646.23Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
T0PWI7_SAPDV1.070e-1547.71Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70283contigM-pyrifera_M_contig70283:10..438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue4e-13
Seed eggNOG ortholog4792.ETI54821
Hectar predicted targeting categoryother localisation
EggNOG OGs2B6Z7@1,2S0NA@2759,3QERA@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size414
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.8724751-CDS-M-pyrifera_M_contig70283:9..4231622816595.8724751-CDS-M-pyrifera_M_contig70283:9..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70283 10..423 -
1692278067.7417114-CDS-M-pyrifera_M_contig70283:9..4231692278067.7417114-CDS-M-pyrifera_M_contig70283:9..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70283 10..423 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.8871052-UTR-M-pyrifera_M_contig70283:423..4381622816595.8871052-UTR-M-pyrifera_M_contig70283:423..438Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70283 424..438 -
1692278067.7581823-UTR-M-pyrifera_M_contig70283:423..4381692278067.7581823-UTR-M-pyrifera_M_contig70283:423..438Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70283 424..438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70283.16795.1prot_M-pyrifera_M_contig70283.16795.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70283 10..423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70283.16795.1

>prot_M-pyrifera_M_contig70283.16795.1 ID=prot_M-pyrifera_M_contig70283.16795.1|Name=mRNA_M-pyrifera_M_contig70283.16795.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
MLEERRRAEEHRMAARMDSEARWRRRMERSPFAVDQLAEHERVDEELRVK
VKEEGRRERAIARRKEKVKTEIIIRALSEASDVEALREEKRAILQEEKRL
RALLEAERAKLHRKADQQAAVRAERHRQRAKREFRRKR
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mRNA from alignment at M-pyrifera_M_contig70283:10..438-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70283.16795.1 ID=mRNA_M-pyrifera_M_contig70283.16795.1|Name=mRNA_M-pyrifera_M_contig70283.16795.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig70283:10..438- (Macrocystis pyrifera P11B4 male)
CAGTTGAAGCGTTCAATGTTGGAAGAGCGGCGTCGTGCGGAGGAGCACCG GATGGCGGCACGCATGGACTCCGAAGCGCGATGGCGGCGCAGAATGGAGC GTTCTCCGTTTGCTGTGGACCAATTGGCGGAGCATGAGCGTGTGGACGAG GAGTTGCGCGTGAAGGTGAAGGAGGAGGGCCGTCGCGAGCGTGCCATCGC CAGGAGGAAGGAGAAAGTGAAGACCGAGATCATCATCCGAGCACTGTCGG AGGCAAGTGATGTCGAAGCGCTTCGGGAAGAGAAGAGAGCGATTCTGCAG GAAGAAAAACGACTCAGAGCCCTCCTGGAGGCCGAGAGAGCCAAGCTGCA CCGGAAAGCCGATCAGCAGGCCGCAGTCAGGGCAGAAAGACACAGACAAA GGGCAAAACGAGAGTTCCGGAGGAAAAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70283:10..438-

>mRNA_M-pyrifera_M_contig70283.16795.1 ID=mRNA_M-pyrifera_M_contig70283.16795.1|Name=mRNA_M-pyrifera_M_contig70283.16795.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig70283:10..438- (Macrocystis pyrifera P11B4 male)
ATGTTGGAAGAGCGGCGTCGTGCGGAGGAGCACCGGATGGCGGCACGCAT
GGACTCCGAAGCGCGATGGCGGCGCAGAATGGAGCGTTCTCCGTTTGCTG
TGGACCAATTGGCGGAGCATGAGCGTGTGGACGAGGAGTTGCGCGTGAAG
GTGAAGGAGGAGGGCCGTCGCGAGCGTGCCATCGCCAGGAGGAAGGAGAA
AGTGAAGACCGAGATCATCATCCGAGCACTGTCGGAGGCAAGTGATGTCG
AAGCGCTTCGGGAAGAGAAGAGAGCGATTCTGCAGGAAGAAAAACGACTC
AGAGCCCTCCTGGAGGCCGAGAGAGCCAAGCTGCACCGGAAAGCCGATCA
GCAGGCCGCAGTCAGGGCAGAAAGACACAGACAAAGGGCAAAACGAGAGT
TCCGGAGGAAAAGGATGTTGGAAGAGCGGCGTCGTGCGGAGGAGCACCGG
ATGGCGGCACGCATGGACTCCGAAGCGCGATGGCGGCGCAGAATGGAGCG
TTCTCCGTTTGCTGTGGACCAATTGGCGGAGCATGAGCGTGTGGACGAGG
AGTTGCGCGTGAAGGTGAAGGAGGAGGGCCGTCGCGAGCGTGCCATCGCC
AGGAGGAAGGAGAAAGTGAAGACCGAGATCATCATCCGAGCACTGTCGGA
GGCAAGTGATGTCGAAGCGCTTCGGGAAGAGAAGAGAGCGATTCTGCAGG
AAGAAAAACGACTCAGAGCCCTCCTGGAGGCCGAGAGAGCCAAGCTGCAC
CGGAAAGCCGATCAGCAGGCCGCAGTCAGGGCAGAAAGACACAGACAAAG
GGCAAAACGAGAGTTCCGGAGGAAAAGG
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