mRNA_M-pyrifera_M_contig70260.16790.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70260.16790.1
Unique NamemRNA_M-pyrifera_M_contig70260.16790.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70260.16790.1 vs. uniprot
Match: D7G5I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I2_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 8.840e-22
Identity = 53/118 (44.92%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:    1 RTYQVEVTAELPDGSRSRWMSGDIKYPHNNKTRRDWDAEAQFAAVWRPGHTNKLVPRFSDARRKREAEAPXXXXQ---KRSRDCHYQKNEETPPEKRGGIREGGGRPKGRYGGKKLRE 345
            ++Y++ + A+L +G R  W S  IK P   KT RD  AE +F   WRP     +V R  D+R + EAEA         KR RDCH    E   PEKRGG REG GRP+G +G KKLR+
Sbjct:   36 KSYRIHLVADLREGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWRPSEGGNVVERLRDSRHRIEAEAEAEVAAARTKRPRDCHASAAEHARPEKRGGKREGAGRPRGSFGPKKLRQ 153
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70260.16790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5I2_ECTSI8.840e-2244.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70260contigM-pyrifera_M_contig70260:691..1035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_000710.1
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.6658986-CDS-M-pyrifera_M_contig70260:690..10351622816595.6658986-CDS-M-pyrifera_M_contig70260:690..1035Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70260 691..1035 +
1692278067.6391582-CDS-M-pyrifera_M_contig70260:690..10351692278067.6391582-CDS-M-pyrifera_M_contig70260:690..1035Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70260 691..1035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70260.16790.1prot_M-pyrifera_M_contig70260.16790.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70260 691..1035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70260.16790.1

>prot_M-pyrifera_M_contig70260.16790.1 ID=prot_M-pyrifera_M_contig70260.16790.1|Name=mRNA_M-pyrifera_M_contig70260.16790.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
RTYQVEVTAELPDGSRSRWMSGDIKYPHNNKTRRDWDAEAQFAAVWRPGH
TNKLVPRFSDARRKREAEAPPPPRQKRSRDCHYQKNEETPPEKRGGIREG
GGRPKGRYGGKKLRE
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mRNA from alignment at M-pyrifera_M_contig70260:691..1035+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70260.16790.1 ID=mRNA_M-pyrifera_M_contig70260.16790.1|Name=mRNA_M-pyrifera_M_contig70260.16790.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig70260:691..1035+ (Macrocystis pyrifera P11B4 male)
AGGACGTATCAAGTGGAGGTCACGGCGGAGCTGCCCGATGGGTCGAGATC
CCGCTGGATGAGCGGTGATATCAAGTATCCGCACAACAACAAAACGCGTC
GAGACTGGGACGCAGAGGCGCAGTTTGCTGCTGTCTGGCGGCCAGGCCAC
ACGAACAAACTGGTGCCTCGCTTCAGTGATGCCAGGCGCAAGCGTGAAGC
CGAAGCTCCTCCTCCTCCTCGACAAAAGCGCTCACGTGACTGCCACTACC
AAAAAAACGAGGAAACACCGCCTGAAAAACGCGGCGGAATACGGGAGGGG
GGCGGCAGGCCGAAGGGGCGCTACGGCGGGAAGAAGCTGCGGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70260:691..1035+

>mRNA_M-pyrifera_M_contig70260.16790.1 ID=mRNA_M-pyrifera_M_contig70260.16790.1|Name=mRNA_M-pyrifera_M_contig70260.16790.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig70260:691..1035+ (Macrocystis pyrifera P11B4 male)
AGGACGTATCAAGTGGAGGTCACGGCGGAGCTGCCCGATGGGTCGAGATC
CCGCTGGATGAGCGGTGATATCAAGTATCCGCACAACAACAAAACGCGTC
GAGACTGGGACGCAGAGGCGCAGTTTGCTGCTGTCTGGCGGCCAGGCCAC
ACGAACAAACTGGTGCCTCGCTTCAGTGATGCCAGGCGCAAGCGTGAAGC
CGAAGCTCCTCCTCCTCCTCGACAAAAGCGCTCACGTGACTGCCACTACC
AAAAAAACGAGGAAACACCGCCTGAAAAACGCGGCGGAATACGGGAGGGG
GGCGGCAGGCCGAAGGGGCGCTACGGCGGGAAGAAGCTGCGGGAGAGGAC
GTATCAAGTGGAGGTCACGGCGGAGCTGCCCGATGGGTCGAGATCCCGCT
GGATGAGCGGTGATATCAAGTATCCGCACAACAACAAAACGCGTCGAGAC
TGGGACGCAGAGGCGCAGTTTGCTGCTGTCTGGCGGCCAGGCCACACGAA
CAAACTGGTGCCTCGCTTCAGTGATGCCAGGCGCAAGCGTGAAGCCGAAG
CTCCTCCTCCTCCTCGACAAAAGCGCTCACGTGACTGCCACTACCAAAAA
AACGAGGAAACACCGCCTGAAAAACGCGGCGGAATACGGGAGGGGGGCGG
CAGGCCGAAGGGGCGCTACGGCGGGAAGAAGCTGCGGGAG
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