mRNA_M-pyrifera_M_contig70238.16786.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70238.16786.1
Unique NamemRNA_M-pyrifera_M_contig70238.16786.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70238.16786.1 vs. uniprot
Match: Q55E77_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55E77_DICDI)

HSP 1 Score: 94.4 bits (233), Expect = 6.610e-18
Identity = 76/269 (28.25%), Postives = 127/269 (47.21%), Query Frame = 1
Query:    1 ETTRLYPGSYTLELHE----DGAEEYLHQCAFYFLSVSLSSTVPDSELLDAVDCGIVSYLPNTLDTVGYLSVLSGEQTHFNTAFLVDVEQQYSETVFTVTD---DYVFAVYVAP--TADVNIGISVVNSTYSLLGFSDATAGGQEYFYATLAADTYTFITQYYPPAENPFPGPQDCAEFTMELALTEQAVVDALLSVDSQCVPTSPPGTLVASGDRLSIAGDYQHVRD-SGNPVAATVAISVTSPTYVYVAMDYNFRVGAMAMRIEANF 777
            E   L PGSY L+++E       +  L  C  + L V +          D V C ++ + P+TL+++GYLS LSG+  +F  + L DV        F+  D     +  +Y+      D+N+ +S  +S  +++    + A G++  Y  L AD YT IT YY     P P  +DC  F + +++   + +     + S C  T+P  T V     +S     Q+ R  S  P   ++  + T+ T+ Y  +DYN  V +MAM++E N+
Sbjct:  874 EILELVPGSYELDIYEPFPTQSNQLNLKNCVDFVLEVGIQIKDESDVDKDTVVCPVLMF-PSTLNSIGYLSALSGDSLYFQESVLADVLTGKDVVTFSTKDTEESSLVRIYIPAHKKLDINVILSYTSSGATIVA---SRAIGEDIIYVHLDADDYT-ITFYYYGLGGPIPKLEDCPSFDVFISIVPDSQLLKNKMITSACPNTAPIPTTVQGNTPVS----NQYYRSMSITPQVTSIPFTATNYTHFYANLDYNDLVASMAMKLEGNY 1133          
BLAST of mRNA_M-pyrifera_M_contig70238.16786.1 vs. uniprot
Match: F0ZI16_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZI16_DICPU)

HSP 1 Score: 82.8 bits (203), Expect = 5.410e-14
Identity = 75/295 (25.42%), Postives = 136/295 (46.10%), Query Frame = 1
Query:    4 TTRLYPGSYTLELHE----DGAEEYLHQCAFYFLSVSLSSTVPDSELLDAVDCGIVSYLPNTLDTVGYLSVLSGEQTHFNTAFLVDVEQQYSETVFTVTDDYVFAVYVAPTADVNIGISVVNSTYSLLGFSDATAGGQEYFYATLAADTYTFITQYYPPAENPFPGPQDCAEFTMELALTEQAVVDALLSVDSQCVPTSP---PGTLVASGDRLSIAGDYQHVRDSGNPVAATVAISVTSPTYVYVAMDYNFRVGAMAMRIEANF----GAE--EVLYAITSIDSAFIEINLLAG 849
            T  L PGSY L ++E    + A+  L  C  + L V + S   +S + D V C  +  LPNT +++G++S L+     F    +  VE       FTVT+  +  +YV PT+ + + I+++NS    +  +D     +   Y  L  +TY  +  Y+  + +  P P+DC  F   ++LT  +V+  + S+ + C  +S    P    +     S     +++     P   T+ ++     ++YV +DY   V +++M +E  +    GA   +V+Y +     AF+   L  G
Sbjct:  858 TIELVPGSYALRIYEPFSNNIAQLELRNCVDFSLEVGIQSQYANS-VNDVVVCPGIE-LPNTFNSIGFMSNLTSNSFSFAENIVAKVEDGKDIVNFTVTEASMLRIYVPPTSLLRMNIALLNSQGKYI-VNDPNIS-EHAIYQALTPETYIIVFTYFGTSGS-LPRPEDCPTFFTSISLTPMSVLSTVQSITNDCSSSSITDIPDDFSSQTFSKSFQRSLKYI-----PSVKTITLTNDKWAHLYVNLDYYNLVSSLSMSLEGFYYSGNGASLHKVVYPLYQSGEAFLNEILPPG 1142          
BLAST of mRNA_M-pyrifera_M_contig70238.16786.1 vs. uniprot
Match: F4Q1E0_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q1E0_CAVFA)

HSP 1 Score: 78.2 bits (191), Expect = 1.940e-12
Identity = 70/290 (24.14%), Postives = 129/290 (44.48%), Query Frame = 1
Query:    7 TRLYPGSYTLELHE----DGAEEYLHQCAFYFLSVSLSSTVPDSELLDAVDCGIVSYLPNTLDTVGYLSVLSGEQTHFNTAFLVDVEQQYSETVFTVTDDYVFAVYVAPTADVNIGISVVNSTYSLLGFSDATAGGQEYFYATLAADTYTFITQYYPPAENPFPGPQDCAEFTMELALTEQAVVDALLSVDSQCVPTSPPGTLVASGDRLSIAGDYQHVRDSGNPVAATVAISVTSPTYVYVAMDYNFRVGAMAMRIEANF---GAEEVLY--AITSIDSAFIEINLLAG 849
            T L  G+Y L ++E       +  ++ C  + L V+L      S   D + C  + + P T +++GYLS L+G+Q +F    L DV+       FT+T   +  +Y+   + ++I + + N+       S  T G +E  Y  L+  TY     YY     P P  +DC +F + +++   + +DA+ S+  QC  ++       +G++L      + +  +  P +    I+ T        + YN  V ++A+++ +     G   V Y  A+     A+I   L AG
Sbjct:  853 TLLSQGNYYLRVYEPFKPSSGKFNINTCVEFTLRVALQLADDASTNQDTIVCQSLLF-PQTFNSIGYLSTLTGQQLYFQQTVLADVQNAKDNVQFTLTTKSLVRIYIPVHSSLDIDLVLANAATGKTISSSRTTG-EEITYNLLSPGTYLIKFTYYG-LNGPLPKVEDCVDFPIFISIVPTSTLDAVPSITQQCDASATDLPDFINGNQLYSGTFMRSLAVTQQPQSMVFTINQTG--LFTTTVQYNDAVASLAIKLNSTIIVNGISTVKYYHALYDGGQAYINEVLPAG 1137          
BLAST of mRNA_M-pyrifera_M_contig70238.16786.1 vs. uniprot
Match: L8GPZ0_ACACA (Laminin egflike (Domains iii and v) domain containing protein (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPZ0_ACACA)

HSP 1 Score: 66.6 bits (161), Expect = 1.320e-8
Identity = 68/291 (23.37%), Postives = 125/291 (42.96%), Query Frame = 1
Query:    1 ETTRLYPGSYTLELHEDGAEEYLHQ--CAFYFLSVSLSSTVPDSELLDAVDCGIVSYLPNTLDTVGYLSVLSGEQTHFNTAFLVDVEQQYSETVFTVTDDYVFAVYVAPTADVNIGISVVNSTYSLLGFS--DA-TAGGQEYFYATLAADTYTFITQYYPPAENPFPGPQDCAEFTMELALTEQAVVDALLSVDSQCVPTSPPGTLVASGDRLSIAGDYQHVRDSGNPVAATVAISVTSPTYVYVAMDYNFRVGAMAMRI---EANFGAEEVLYAITSIDSAFIEINLLAG 849
            +  +L  G Y LE++E       +   C  + L V+L    P ++      C     LP +++ +  LSVLS    H+    L +V  +     F +    VF +Y+     +++ + + + T    G    DA T+ G+E     L A  +   T+ YP  +   P   DCA F  E+A+     +    +V   C     P  L  + +   +AG Y++ R +       +A++VTS + + + + Y+F   A++ R+   E+   + E  Y+    + AF+   L+ G
Sbjct:   80 DVVQLNEGQYVLEVYEPSLLNNANARGCVKFDLLVALLPVTPSADSPVLSRCWDWP-LPESVNNIAGLSVLSDSTMHWQRDVLANVRSKEEYMAFNLDTPSVFRIYIPHHTLLDVDLYLYDGTPGHPGAEQIDAKTSFGEESIAYKLPAGPHFLKTKLYPQRQISLPSASDCAFFPAEVAIAPLVSLTNNPAVGQTCTNMPLPAALTPNTE---VAGTYRYARTAAQ-FQHKIALNVTSNSELMLDLKYDFITSAVSARLTRRESATASGETFYSRIGTNHAFLNAALVPG 365          
BLAST of mRNA_M-pyrifera_M_contig70238.16786.1 vs. uniprot
Match: UPI000644E6F6 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E6F6)

HSP 1 Score: 63.2 bits (152), Expect = 1.860e-7
Identity = 62/259 (23.94%), Postives = 119/259 (45.95%), Query Frame = 1
Query:   13 LYPGSYTLELHEDGAEEY----LHQCAFYFLSVSLSSTVPDSEL-LDAVDCGIVSYLPNTLDTVGYLSVLSGEQTHFNTAFLVDVEQQYSETVFTVTDDYVFAVYVAPTADVNIGISVVNSTYSLLGFSDATAGGQEYFYATLAADTYTFITQYYPPAENPFPGPQDCAEFTMELALTEQAVVDALLSVDSQCVPTS--PPGTLVASGDRLSIAGDYQHVRDSGNPVAATVAISVTSPT-YVYVAMDYNFRVGAMAMRI 765
            L PG Y L ++E  A  +    L+ C  + L   +   + D+++  D + C  +  LP T +++GY+S L+     F    LVDV        FT+T   +  V++     V+I  S++    +L   + +   G+E  Y  L    Y+    Y+    +P P  +DC  F   +++ + + + A+ S+ ++C   S  PP  ++ +   L+    YQ +  +  P+  +V    T+ T  ++  + YN  V +M M++
Sbjct:  855 LPPGDYFLSIYEPFANIFQGVILNNCVDFTLEYGIQ-LIDDTQVNQDTIICDSL-LLPQTFNSIGYMSGLTDGSLSFQQNVLVDVMAGNDLIKFTLTAPSLLRVFLPAHMTVDIDFSLLFEGKTL-PIARSVTTGEEIIYNQLDVGNYSLKFIYFGMNGSPLPKVEDCTAFPAFISIAKVSNLLAIPSITAKCTNDSITPPANIIGN---LAFNATYQRLMQA--PIQPSVLSFTTNATGQIHAYLKYNDLVDSMMMKL 1105          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70238.16786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Q55E77_DICDI6.610e-1828.25Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
F0ZI16_DICPU5.410e-1425.42Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
F4Q1E0_CAVFA1.940e-1224.14Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
L8GPZ0_ACACA1.320e-823.37Laminin egflike (Domains iii and v) domain contain... [more]
UPI000644E6F61.860e-723.94hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70238contigM-pyrifera_M_contig70238:337..1185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog44689.DDB0201696
KEGG koko:K19636
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Laminin EGF domain
EggNOG OGs3XE4U@554915,KOG1836@1,KOG1836@2759
COG Functional cat.W
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size849
Cds size849
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.4838955-CDS-M-pyrifera_M_contig70238:336..11851622816595.4838955-CDS-M-pyrifera_M_contig70238:336..1185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70238 337..1185 +
1692278067.5641809-CDS-M-pyrifera_M_contig70238:336..11851692278067.5641809-CDS-M-pyrifera_M_contig70238:336..1185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70238 337..1185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70238.16786.1prot_M-pyrifera_M_contig70238.16786.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70238 337..1185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70238.16786.1

>prot_M-pyrifera_M_contig70238.16786.1 ID=prot_M-pyrifera_M_contig70238.16786.1|Name=mRNA_M-pyrifera_M_contig70238.16786.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=283bp
ETTRLYPGSYTLELHEDGAEEYLHQCAFYFLSVSLSSTVPDSELLDAVDC
GIVSYLPNTLDTVGYLSVLSGEQTHFNTAFLVDVEQQYSETVFTVTDDYV
FAVYVAPTADVNIGISVVNSTYSLLGFSDATAGGQEYFYATLAADTYTFI
TQYYPPAENPFPGPQDCAEFTMELALTEQAVVDALLSVDSQCVPTSPPGT
LVASGDRLSIAGDYQHVRDSGNPVAATVAISVTSPTYVYVAMDYNFRVGA
MAMRIEANFGAEEVLYAITSIDSAFIEINLLAG
back to top

mRNA from alignment at M-pyrifera_M_contig70238:337..1185+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70238.16786.1 ID=mRNA_M-pyrifera_M_contig70238.16786.1|Name=mRNA_M-pyrifera_M_contig70238.16786.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=849bp|location=Sequence derived from alignment at M-pyrifera_M_contig70238:337..1185+ (Macrocystis pyrifera P11B4 male)
GAGACTACAAGGCTTTACCCCGGTTCCTACACTCTGGAGCTTCATGAAGA TGGGGCAGAGGAGTACTTGCACCAGTGTGCCTTTTATTTCCTCTCAGTAT CCCTGTCGAGTACTGTGCCAGACAGCGAACTTCTTGACGCTGTTGACTGT GGCATTGTTTCCTATCTTCCCAACACTCTGGATACCGTGGGATACCTTTC GGTGCTCAGCGGCGAGCAGACGCACTTCAACACTGCATTCCTCGTTGACG TCGAACAACAGTACTCTGAGACCGTTTTTACCGTCACAGATGATTACGTC TTCGCTGTCTATGTTGCTCCTACCGCCGATGTCAACATCGGCATCAGTGT GGTCAACAGCACCTATTCTCTGCTCGGGTTCAGTGACGCCACCGCTGGCG GCCAGGAATACTTTTATGCAACCCTAGCGGCTGATACGTACACGTTCATT ACCCAGTACTACCCCCCCGCAGAGAACCCGTTTCCTGGCCCGCAGGACTG CGCCGAGTTTACTATGGAGCTTGCCCTCACCGAGCAAGCAGTAGTGGACG CCTTGCTTTCCGTCGACAGTCAGTGTGTTCCCACGTCACCGCCTGGAACT CTTGTTGCCTCAGGCGATCGTCTGAGTATTGCTGGCGACTACCAACACGT ACGAGATAGTGGGAATCCCGTTGCTGCAACGGTTGCAATCTCTGTCACAT CGCCCACATACGTCTACGTTGCGATGGATTACAACTTCCGTGTTGGAGCC ATGGCAATGAGAATTGAGGCGAACTTTGGAGCCGAGGAGGTCCTCTACGC CATTACTTCCATCGACAGCGCATTCATCGAGATCAACCTTCTTGCTGGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig70238:337..1185+

>mRNA_M-pyrifera_M_contig70238.16786.1 ID=mRNA_M-pyrifera_M_contig70238.16786.1|Name=mRNA_M-pyrifera_M_contig70238.16786.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1698bp|location=Sequence derived from alignment at M-pyrifera_M_contig70238:337..1185+ (Macrocystis pyrifera P11B4 male)
GAGACTACAAGGCTTTACCCCGGTTCCTACACTCTGGAGCTTCATGAAGA
TGGGGCAGAGGAGTACTTGCACCAGTGTGCCTTTTATTTCCTCTCAGTAT
CCCTGTCGAGTACTGTGCCAGACAGCGAACTTCTTGACGCTGTTGACTGT
GGCATTGTTTCCTATCTTCCCAACACTCTGGATACCGTGGGATACCTTTC
GGTGCTCAGCGGCGAGCAGACGCACTTCAACACTGCATTCCTCGTTGACG
TCGAACAACAGTACTCTGAGACCGTTTTTACCGTCACAGATGATTACGTC
TTCGCTGTCTATGTTGCTCCTACCGCCGATGTCAACATCGGCATCAGTGT
GGTCAACAGCACCTATTCTCTGCTCGGGTTCAGTGACGCCACCGCTGGCG
GCCAGGAATACTTTTATGCAACCCTAGCGGCTGATACGTACACGTTCATT
ACCCAGTACTACCCCCCCGCAGAGAACCCGTTTCCTGGCCCGCAGGACTG
CGCCGAGTTTACTATGGAGCTTGCCCTCACCGAGCAAGCAGTAGTGGACG
CCTTGCTTTCCGTCGACAGTCAGTGTGTTCCCACGTCACCGCCTGGAACT
CTTGTTGCCTCAGGCGATCGTCTGAGTATTGCTGGCGACTACCAACACGT
ACGAGATAGTGGGAATCCCGTTGCTGCAACGGTTGCAATCTCTGTCACAT
CGCCCACATACGTCTACGTTGCGATGGATTACAACTTCCGTGTTGGAGCC
ATGGCAATGAGAATTGAGGCGAACTTTGGAGCCGAGGAGGTCCTCTACGC
CATTACTTCCATCGACAGCGCATTCATCGAGATCAACCTTCTTGCTGGCG
AGACTACAAGGCTTTACCCCGGTTCCTACACTCTGGAGCTTCATGAAGAT
GGGGCAGAGGAGTACTTGCACCAGTGTGCCTTTTATTTCCTCTCAGTATC
CCTGTCGAGTACTGTGCCAGACAGCGAACTTCTTGACGCTGTTGACTGTG
GCATTGTTTCCTATCTTCCCAACACTCTGGATACCGTGGGATACCTTTCG
GTGCTCAGCGGCGAGCAGACGCACTTCAACACTGCATTCCTCGTTGACGT
CGAACAACAGTACTCTGAGACCGTTTTTACCGTCACAGATGATTACGTCT
TCGCTGTCTATGTTGCTCCTACCGCCGATGTCAACATCGGCATCAGTGTG
GTCAACAGCACCTATTCTCTGCTCGGGTTCAGTGACGCCACCGCTGGCGG
CCAGGAATACTTTTATGCAACCCTAGCGGCTGATACGTACACGTTCATTA
CCCAGTACTACCCCCCCGCAGAGAACCCGTTTCCTGGCCCGCAGGACTGC
GCCGAGTTTACTATGGAGCTTGCCCTCACCGAGCAAGCAGTAGTGGACGC
CTTGCTTTCCGTCGACAGTCAGTGTGTTCCCACGTCACCGCCTGGAACTC
TTGTTGCCTCAGGCGATCGTCTGAGTATTGCTGGCGACTACCAACACGTA
CGAGATAGTGGGAATCCCGTTGCTGCAACGGTTGCAATCTCTGTCACATC
GCCCACATACGTCTACGTTGCGATGGATTACAACTTCCGTGTTGGAGCCA
TGGCAATGAGAATTGAGGCGAACTTTGGAGCCGAGGAGGTCCTCTACGCC
ATTACTTCCATCGACAGCGCATTCATCGAGATCAACCTTCTTGCTGGC
back to top