mRNA_M-pyrifera_M_contig70233.16785.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70233.16785.1
Unique NamemRNA_M-pyrifera_M_contig70233.16785.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70233.16785.1 vs. uniprot
Match: D7FZ86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ86_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 7.760e-20
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 QICCELGDPYEVPEQTPLLWYLAMRAADMFKTKHGRYPGEEDEQV 135
            +I CELGDPYEVPEQTP++WYLA+RAAD FKTK+GRYPGEED+QV
Sbjct:  165 EISCELGDPYEVPEQTPIVWYLALRAADSFKTKNGRYPGEEDDQV 209
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BLAST of mRNA_M-pyrifera_M_contig70233.16785.1 vs. uniprot
Match: A0A6H5KYD4_9PHAE (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD4_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.200e-19
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 QICCELGDPYEVPEQTPLLWYLAMRAADMFKTKHGRYPGEEDEQV 135
            +I CELGDPYEVPEQTP++WYLA+RAAD FKTK+GRYPGEED+QV
Sbjct:  399 EISCELGDPYEVPEQTPIVWYLALRAADAFKTKNGRYPGEEDDQV 443
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BLAST of mRNA_M-pyrifera_M_contig70233.16785.1 vs. uniprot
Match: A0A7S2E762_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E762_TRICV)

HSP 1 Score: 60.5 bits (145), Expect = 1.910e-9
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   22 DPYEVPEQTPLLWYLAMRAADMFKTKHGRYPGEE 123
            DPYEVPE TPLLW++A+RA D+F+  HGRYPG +
Sbjct:  372 DPYEVPEHTPLLWHVALRACDVFRRNHGRYPGSD 405
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BLAST of mRNA_M-pyrifera_M_contig70233.16785.1 vs. uniprot
Match: A0A7S1VT15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VT15_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.840e-8
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:   22 DPYEVPEQTPLLWYLAMRAADMFKTKHGRYPG 117
            DPYEVPE TP+LWY+A+RA   F   HGRYPG
Sbjct:   49 DPYEVPEHTPILWYMALRACRKFHQAHGRYPG 80
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BLAST of mRNA_M-pyrifera_M_contig70233.16785.1 vs. uniprot
Match: A0A7S4JKD3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JKD3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.490e-6
Identity = 19/34 (55.88%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   22 DPYEVPEQTPLLWYLAMRAADMFKTKHGRYPGEE 123
            DPYE PE TPLLW++A+RA + F++ H  YPG +
Sbjct:  404 DPYERPEHTPLLWHIALRACEYFRSVHDHYPGRD 437
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BLAST of mRNA_M-pyrifera_M_contig70233.16785.1 vs. uniprot
Match: A0A7S4AP32_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AP32_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.780e-6
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:   16 LGDPYEVPEQTPLLWYLAMRAADMFKTKHGRYPG 117
            L DPY+VP  TP LWYL +RAA +F  + GRYPG
Sbjct:  539 LMDPYDVPVHTPFLWYLGVRAAQIFCHREGRYPG 572
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BLAST of mRNA_M-pyrifera_M_contig70233.16785.1 vs. uniprot
Match: K0R317_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R317_THAOC)

HSP 1 Score: 49.3 bits (116), Expect = 1.490e-5
Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   22 DPYEV-PEQTPLLWYLAMRAADMFKTKHGRYPGEEDEQV 135
            DPYE  P QTPLLW++A+RA D F  +H  YPG+ ++++
Sbjct:  120 DPYETDPVQTPLLWWIALRACDCFFDRHQHYPGKHEQEL 158
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70233.16785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FZ86_ECTSI7.760e-2082.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYD4_9PHAE3.200e-1982.22NEDD8-activating enzyme E1 regulatory subunit n=1 ... [more]
A0A7S2E762_TRICV1.910e-967.65Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1VT15_9STRA2.840e-868.75Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S4JKD3_9STRA3.490e-655.88Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A7S4AP32_9STRA4.780e-661.76Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
K0R317_THAOC1.490e-551.28Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70233contigM-pyrifera_M_contig70233:905..1045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue6.5e-16
Seed eggNOG ortholog2880.D7FZ86
Preferred nameNAE1
KEGG koko:K04532
KEGG Pathwayko05010,map05010
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000278,GO:0000280,GO:0001101,GO:0001540,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006464,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008641,GO:0009414,GO:0009415,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009735,GO:0009755,GO:0009791,GO:0009965,GO:0009966,GO:0009968,GO:0009987,GO:0010016,GO:0010033,GO:0010035,GO:0010252,GO:0010389,GO:0010564,GO:0010646,GO:0010648,GO:0010941,GO:0010948,GO:0010972,GO:0012501,GO:0016043,GO:0016874,GO:0016877,GO:0019538,GO:0019781,GO:0019899,GO:0022402,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0031570,GO:0031625,GO:0032446,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033218,GO:0033314,GO:0033554,GO:0034641,GO:0035825,GO:0036211,GO:0042221,GO:0042277,GO:0042579,GO:0042592,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043516,GO:0043518,GO:0043523,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0044774,GO:0044818,GO:0045116,GO:0045786,GO:0045930,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048366,GO:0048367,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048827,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051321,GO:0051402,GO:0051716,GO:0051726,GO:0061982,GO:0065007,GO:0065008,GO:0070647,GO:0070887,GO:0070997,GO:0071310,GO:0071365,GO:0071495,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090304,GO:0099402,GO:0140013,GO:1901214,GO:1901360,GO:1901564,GO:1901700,GO:1901796,GO:1901797,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902531,GO:1902532,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1905392,GO:2001020,GO:2001021
EggNOG free text desc.NEDD8 activating enzyme activity
EggNOG OGsCOG0476@1,KOG2016@2759
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-06_008910.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.450721-CDS-M-pyrifera_M_contig70233:904..10451622816595.450721-CDS-M-pyrifera_M_contig70233:904..1045Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70233 905..1045 -
1692278067.5504954-CDS-M-pyrifera_M_contig70233:904..10451692278067.5504954-CDS-M-pyrifera_M_contig70233:904..1045Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70233 905..1045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70233.16785.1prot_M-pyrifera_M_contig70233.16785.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70233 905..1045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70233.16785.1

>prot_M-pyrifera_M_contig70233.16785.1 ID=prot_M-pyrifera_M_contig70233.16785.1|Name=mRNA_M-pyrifera_M_contig70233.16785.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
QICCELGDPYEVPEQTPLLWYLAMRAADMFKTKHGRYPGEEDEQVR*
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mRNA from alignment at M-pyrifera_M_contig70233:905..1045-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70233.16785.1 ID=mRNA_M-pyrifera_M_contig70233.16785.1|Name=mRNA_M-pyrifera_M_contig70233.16785.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=141bp|location=Sequence derived from alignment at M-pyrifera_M_contig70233:905..1045- (Macrocystis pyrifera P11B4 male)
CAGATATGTTGCGAGCTGGGAGACCCGTACGAGGTCCCCGAGCAGACGCC
GCTGCTGTGGTATCTGGCCATGCGCGCCGCGGACATGTTCAAGACAAAAC
ATGGACGCTATCCGGGAGAAGAGGATGAACAGGTCAGATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70233:905..1045-

>mRNA_M-pyrifera_M_contig70233.16785.1 ID=mRNA_M-pyrifera_M_contig70233.16785.1|Name=mRNA_M-pyrifera_M_contig70233.16785.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig70233:905..1045- (Macrocystis pyrifera P11B4 male)
CAGATATGTTGCGAGCTGGGAGACCCGTACGAGGTCCCCGAGCAGACGCC
GCTGCTGTGGTATCTGGCCATGCGCGCCGCGGACATGTTCAAGACAAAAC
ATGGACGCTATCCGGGAGAAGAGGATGAACAGGTCAGATAGCAGATATGT
TGCGAGCTGGGAGACCCGTACGAGGTCCCCGAGCAGACGCCGCTGCTGTG
GTATCTGGCCATGCGCGCCGCGGACATGTTCAAGACAAAACATGGACGCT
ATCCGGGAGAAGAGGATGAACAGGTCAGATAG
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