mRNA_M-pyrifera_M_contig70225.16784.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70225.16784.1
Unique NamemRNA_M-pyrifera_M_contig70225.16784.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70225.16784.1 vs. uniprot
Match: D7FWZ8_ECTSI (TPR repeat-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWZ8_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 2.800e-6
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:    1 RLVRAAGKLEEAEPLQRRAVEIGEKVL 81
            RLVRAAGKLEEAEPLQRRAVEIGE+VL
Sbjct:   18 RLVRAAGKLEEAEPLQRRAVEIGEQVL 44
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BLAST of mRNA_M-pyrifera_M_contig70225.16784.1 vs. uniprot
Match: D8LLM3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM3_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 4.870e-6
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    4 LVRAAGKLEEAEPLQRRAVEIGEKVLGSNSPDLATWANNLGRLL 135
            L  A G+  EA+PL  RA+E+GEK LG + PDLATW NN   LL
Sbjct:    3 LPHALGEDTEADPLYLRAIEVGEKKLGPDHPDLATWLNNQAVLL 46
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BLAST of mRNA_M-pyrifera_M_contig70225.16784.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 8.150e-6
Identity = 25/48 (52.08%), Postives = 28/48 (58.33%), Query Frame = 1 
Query:    1 RLVRAAGKLEEAEPLQRRAVEIGEKVLGSNSPDLATWANNLGRLLMVR 144
            RL    G   EA+P   RA+EIGEKVLG   PDLA W NN   LL  +
Sbjct:  638 RLHELEGNFAEADPFNLRAIEIGEKVLGPEHPDLAVWLNNRAELLRAQ 685
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BLAST of mRNA_M-pyrifera_M_contig70225.16784.1 vs. uniprot
Match: A0A7S3NLU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLU4_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.390e-5
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    4 LVRAAGKLEEAEPLQRRAVEIGEKVLGSNSPDLATW 111
            L+ + GK  EA+PL  RA+EIGEK LG N P+LATW
Sbjct:    8 LLESQGKYNEAKPLYERAIEIGEKTLGPNHPNLATW 43
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BLAST of mRNA_M-pyrifera_M_contig70225.16784.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 8.850e-5
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    7 VRAAGKLEEAEPLQRRAVEIGEKVLGSNSPDLATWANN 120
            VR  GK  EA+PL  RA+EIGEK+LG + PDLAT  NN
Sbjct:  165 VRFRGKYAEADPLYLRAIEIGEKMLGPDHPDLATRLNN 202
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70225.16784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FWZ8_ECTSI2.800e-696.30TPR repeat-containing protein n=2 Tax=Ectocarpus T... [more]
D8LLM3_ECTSI4.870e-656.82Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5JJK0_9PHAE8.150e-652.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3NLU4_9STRA1.390e-561.11Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A6H5K0C4_9PHAE8.850e-563.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70225contigM-pyrifera_M_contig70225:624..800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.420795-CDS-M-pyrifera_M_contig70225:623..8001622816595.420795-CDS-M-pyrifera_M_contig70225:623..800Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70225 624..800 +
1692278067.540444-CDS-M-pyrifera_M_contig70225:623..8001692278067.540444-CDS-M-pyrifera_M_contig70225:623..800Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70225 624..800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70225.16784.1prot_M-pyrifera_M_contig70225.16784.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70225 624..800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70225.16784.1

>prot_M-pyrifera_M_contig70225.16784.1 ID=prot_M-pyrifera_M_contig70225.16784.1|Name=mRNA_M-pyrifera_M_contig70225.16784.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
RLVRAAGKLEEAEPLQRRAVEIGEKVLGSNSPDLATWANNLGRLLMVRER
PRQASDRV*
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mRNA from alignment at M-pyrifera_M_contig70225:624..800+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70225.16784.1 ID=mRNA_M-pyrifera_M_contig70225.16784.1|Name=mRNA_M-pyrifera_M_contig70225.16784.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig70225:624..800+ (Macrocystis pyrifera P11B4 male)
AGGTTGGTGCGAGCCGCCGGCAAGCTGGAGGAGGCCGAGCCGCTCCAGAG
GCGTGCCGTGGAAATCGGCGAGAAGGTGCTAGGCTCCAACTCTCCCGACC
TGGCCACGTGGGCCAACAATCTAGGGAGGTTGCTCATGGTGAGAGAAAGA
CCGCGACAAGCAAGCGATCGCGTATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70225:624..800+

>mRNA_M-pyrifera_M_contig70225.16784.1 ID=mRNA_M-pyrifera_M_contig70225.16784.1|Name=mRNA_M-pyrifera_M_contig70225.16784.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig70225:624..800+ (Macrocystis pyrifera P11B4 male)
AGGTTGGTGCGAGCCGCCGGCAAGCTGGAGGAGGCCGAGCCGCTCCAGAG
GCGTGCCGTGGAAATCGGCGAGAAGGTGCTAGGCTCCAACTCTCCCGACC
TGGCCACGTGGGCCAACAATCTAGGGAGGTTGCTCATGGTGAGAGAAAGA
CCGCGACAAGCAAGCGATCGCGTATAAAGGTTGGTGCGAGCCGCCGGCAA
GCTGGAGGAGGCCGAGCCGCTCCAGAGGCGTGCCGTGGAAATCGGCGAGA
AGGTGCTAGGCTCCAACTCTCCCGACCTGGCCACGTGGGCCAACAATCTA
GGGAGGTTGCTCATGGTGAGAGAAAGACCGCGACAAGCAAGCGATCGCGT
ATAA
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