mRNA_M-pyrifera_M_contig70203.16783.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70203.16783.1
Unique NamemRNA_M-pyrifera_M_contig70203.16783.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70203.16783.1 vs. uniprot
Match: A0A2D4BY23_PYTIN ([Phosphatase 2A protein]-leucine-carboxy methyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BY23_PYTIN)

HSP 1 Score: 67.4 bits (163), Expect = 2.470e-13
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 SAAALGYYEDPFIQFMVPKLQRRAPLINRGYFARVAALEQIALAFL 138
            SAA+LGY+EDPF+QF V    RR P+INRGY+ARV A+E++ L FL
Sbjct:   13 SAASLGYFEDPFVQFFVKSPSRRMPIINRGYYARVTAMERVVLRFL 58
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BLAST of mRNA_M-pyrifera_M_contig70203.16783.1 vs. uniprot
Match: A0A2D4CLK6_PYTIN (Leucine carboxyl methyltransferase 1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CLK6_PYTIN)

HSP 1 Score: 67.4 bits (163), Expect = 4.960e-12
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 SAAALGYYEDPFIQFMVPKLQRRAPLINRGYFARVAALEQIALAFL 138
            SAA+LGY+EDPF+QF V    RR P+INRGY+ARV A+E++ L FL
Sbjct:   13 SAASLGYFEDPFVQFFVKSPSRRMPIINRGYYARVTAMERVVLRFL 58
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BLAST of mRNA_M-pyrifera_M_contig70203.16783.1 vs. uniprot
Match: M4B8A1_HYAAE (Leucine carboxyl methyltransferase 1 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B8A1_HYAAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.780e-11
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 SAAALGYYEDPFIQFMVPKLQRRAPLINRGYFARVAALEQIALAFL 138
            SA+ LGYY DPF+QF VP   RR PLINRGY+ARVAA++ +   FL
Sbjct:   33 SASQLGYYVDPFVQFFVPTPSRRMPLINRGYYARVAAVDSLVCKFL 78
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BLAST of mRNA_M-pyrifera_M_contig70203.16783.1 vs. uniprot
Match: A0A662WF69_9STRA (Leucine carboxyl methyltransferase 1 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WF69_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.410e-11
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 SAAALGYYEDPFIQFMVPKLQRRAPLINRGYFARVAALEQIALAFL 138
            SA+ LGYY DPF+QF V    RR PLINRGY+ARVAA+E +   FL
Sbjct:   28 SASQLGYYADPFVQFFVKSPSRRMPLINRGYYARVAAIESLVYKFL 73
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BLAST of mRNA_M-pyrifera_M_contig70203.16783.1 vs. uniprot
Match: H3GMF6_PHYRM (Leucine carboxyl methyltransferase 1 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMF6_PHYRM)

HSP 1 Score: 63.5 bits (153), Expect = 1.300e-10
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 SAAALGYYEDPFIQFMVPKLQRRAPLINRGYFARVAALEQIALAFL 138
            SA+ LGYY DPF+QF V    RR PLINRGY+ARVAA+E +   FL
Sbjct:   25 SASQLGYYADPFVQFFVKSPSRRMPLINRGYYARVAAVESLVRKFL 70
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BLAST of mRNA_M-pyrifera_M_contig70203.16783.1 vs. uniprot
Match: K3WAX9_GLOUD (Leucine carboxyl methyltransferase 1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAX9_GLOUD)

HSP 1 Score: 63.2 bits (152), Expect = 1.800e-10
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 SAAALGYYEDPFIQFMVPKLQRRAPLINRGYFARVAALEQIALAFL 138
            SA+ALGYY DP+IQ+ V    RR P+INRGY+ARVAA+E +   FL
Sbjct:   28 SASALGYYRDPYIQYFVKSPSRRMPIINRGYYARVAAVETLVTRFL 73
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BLAST of mRNA_M-pyrifera_M_contig70203.16783.1 vs. uniprot
Match: A0A421GA83_9STRA (Leucine carboxyl methyltransferase 1 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GA83_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.580e-10
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 SAAALGYYEDPFIQFMVPKLQRRAPLINRGYFARVAALEQIALAFL 138
            SA+ LGYY DPF+QF V    RR P+INRGY+ARVAA+E +   FL
Sbjct:   27 SASQLGYYADPFVQFFVKSPSRRMPIINRGYYARVAAVESLVRKFL 72
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BLAST of mRNA_M-pyrifera_M_contig70203.16783.1 vs. uniprot
Match: G4YJV8_PHYSP (Leucine carboxyl methyltransferase 1 n=4 Tax=Phytophthora TaxID=4783 RepID=G4YJV8_PHYSP)

HSP 1 Score: 62.4 bits (150), Expect = 3.420e-10
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 SAAALGYYEDPFIQFMVPKLQRRAPLINRGYFARVAALEQIALAFL 138
            SA+ LGYY DPF+QF V    RR P+INRGY+ARVAA+E +   FL
Sbjct:   28 SASQLGYYADPFVQFFVKAPSRRMPIINRGYYARVAAVESLVRKFL 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig70203.16783.1 vs. uniprot
Match: A0A225WWV5_9STRA (Leucine carboxyl methyltransferase 1 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WWV5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.440e-10
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 SAAALGYYEDPFIQFMVPKLQRRAPLINRGYFARVAALEQIALAFL 138
            SA+ LGYY DPF+QF V    RR P+INRGY+ARVAA+E +   FL
Sbjct:   27 SASKLGYYTDPFVQFFVKAPSRRMPIINRGYYARVAAVESLVRKFL 72
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BLAST of mRNA_M-pyrifera_M_contig70203.16783.1 vs. uniprot
Match: A0A5D6XUU8_9STRA (Leucine carboxyl methyltransferase 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUU8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.460e-10
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 SAAALGYYEDPFIQFMVPKLQRRAPLINRGYFARVAALEQIALAFL 138
            SA++LGYY DPF+QF V    RR P+INRGY+ARVAA+E +   FL
Sbjct:   23 SASSLGYYHDPFVQFFVKFPSRRMPIINRGYYARVAAVEALVSKFL 68
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70203.16783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4BY23_PYTIN2.470e-1363.04[Phosphatase 2A protein]-leucine-carboxy methyltra... [more]
A0A2D4CLK6_PYTIN4.960e-1263.04Leucine carboxyl methyltransferase 1 n=1 Tax=Pythi... [more]
M4B8A1_HYAAE3.780e-1163.04Leucine carboxyl methyltransferase 1 n=1 Tax=Hyalo... [more]
A0A662WF69_9STRA7.410e-1163.04Leucine carboxyl methyltransferase 1 n=2 Tax=Notho... [more]
H3GMF6_PHYRM1.300e-1063.04Leucine carboxyl methyltransferase 1 n=1 Tax=Phyto... [more]
K3WAX9_GLOUD1.800e-1060.87Leucine carboxyl methyltransferase 1 n=1 Tax=Globi... [more]
A0A421GA83_9STRA2.580e-1060.87Leucine carboxyl methyltransferase 1 n=4 Tax=Phyto... [more]
G4YJV8_PHYSP3.420e-1060.87Leucine carboxyl methyltransferase 1 n=4 Tax=Phyto... [more]
A0A225WWV5_9STRA3.440e-1060.87Leucine carboxyl methyltransferase 1 n=1 Tax=Phyto... [more]
A0A5D6XUU8_9STRA3.460e-1060.87Leucine carboxyl methyltransferase 1 n=1 Tax=Pythi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70203contigM-pyrifera_M_contig70203:818..1161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue9.9e-09
Seed eggNOG ortholog272952.HpaP802504
KEGG rclassRC00003,RC00460,RC00745
KEGG koko:K15451,ko:K18203
KEGG ReactionR10586,R10587
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0016740,GO:0016741,GO:0023051,GO:0023057,GO:0032259,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0065007,GO:1900457,GO:1900458
EggNOG free text desc.Leucine carboxyl methyltransferase
EggNOG OGs3Q7C2@4776,KOG2918@1,KOG2918@2759
EC2.1.1.233,2.1.1.290,2.3.1.231
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03016
Exons2
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.3750992-CDS-M-pyrifera_M_contig70203:817..9051622816595.3750992-CDS-M-pyrifera_M_contig70203:817..905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70203 818..905 +
1692278067.521652-CDS-M-pyrifera_M_contig70203:817..9051692278067.521652-CDS-M-pyrifera_M_contig70203:817..905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70203 818..905 +
1622816595.3862767-CDS-M-pyrifera_M_contig70203:1111..11611622816595.3862767-CDS-M-pyrifera_M_contig70203:1111..1161Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70203 1112..1161 +
1692278067.5319004-CDS-M-pyrifera_M_contig70203:1111..11611692278067.5319004-CDS-M-pyrifera_M_contig70203:1111..1161Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70203 1112..1161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70203.16783.1prot_M-pyrifera_M_contig70203.16783.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70203 818..1161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70203.16783.1

>prot_M-pyrifera_M_contig70203.16783.1 ID=prot_M-pyrifera_M_contig70203.16783.1|Name=mRNA_M-pyrifera_M_contig70203.16783.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
SAAALGYYEDPFIQFMVPKLQRRAPLINRGYFARVAALEQIALAFL
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mRNA from alignment at M-pyrifera_M_contig70203:818..1161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70203.16783.1 ID=mRNA_M-pyrifera_M_contig70203.16783.1|Name=mRNA_M-pyrifera_M_contig70203.16783.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=344bp|location=Sequence derived from alignment at M-pyrifera_M_contig70203:818..1161+ (Macrocystis pyrifera P11B4 male)
TCGGCTGCTGCTTTGGGGTATTACGAAGACCCTTTCATCCAATTCATGGT
TCCAAAGTTGCAAAGACGAGCTCCTCTCATCAACAGAGGTACAGCGCTCG
CAACATTACCCCCCACATCCCCTCTACCTCCTTCTTTTCTCCTTCCTTCC
TTTTTTTCTCTCGCACCCACCTCCTCCACCACCCTTCACCTCAATCCAAC
GTTCCTATCACCACTACCACCTCCCAATACACTCCTCCAAACATTCCTAT
TCATCCCTATACACACCTAATTTGGCTGATTTCCCTCCTTGCAGGCTATT
TTGCCCGTGTCGCTGCGTTAGAGCAAATTGCGTTGGCATTTTTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70203:818..1161+

>mRNA_M-pyrifera_M_contig70203.16783.1 ID=mRNA_M-pyrifera_M_contig70203.16783.1|Name=mRNA_M-pyrifera_M_contig70203.16783.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig70203:818..1161+ (Macrocystis pyrifera P11B4 male)
TCGGCTGCTGCTTTGGGGTATTACGAAGACCCTTTCATCCAATTCATGGT
TCCAAAGTTGCAAAGACGAGCTCCTCTCATCAACAGAGTCGGCTGCTGCT
TTGGGGTATTACGAAGACCCTTTCATCCAATTCATGGTTCCAAAGTTGCA
AAGACGAGCTCCTCTCATCAACAGAGGCTATTTTGCCCGTGTCGCTGCGT
TAGAGCAAATTGCGTTGGCATTTTTAGCTATTTTGCCCGTGTCGCTGCGT
TAGAGCAAATTGCGTTGGCATTTTTA
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