mRNA_M-pyrifera_M_contig70203.16782.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70203.16782.1
Unique NamemRNA_M-pyrifera_M_contig70203.16782.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70203.16782.1 vs. uniprot
Match: UPI0007672EDF (transmembrane protein 234 homolog n=1 Tax=Dufourea novaeangliae TaxID=178035 RepID=UPI0007672EDF)

HSP 1 Score: 59.3 bits (142), Expect = 3.410e-9
Identity = 35/94 (37.23%), Postives = 58/94 (61.70%), Query Frame = 1
Query:    1 LGLVALLWGVTNPWMEVGAKSRDGVGEKTEEWGDTLSSMS----SWGFLAPYIANQAGSVLNVVLLGTYPTHIVGPITNALTVVVTALSSSAFG 270
            L +VALLWGVTNP+++ GA+  + V + + ++G     ++    +  ++ P+I NQ GSV+  V+LG     +  P+TN+LT VVTA++    G
Sbjct:   11 LAVVALLWGVTNPFIKKGAQGLENV-KASSKFGQFYKELTFLLTNLKYIIPFIINQGGSVIYFVMLGGTDISLAVPVTNSLTFVVTAITGWMLG 103          
BLAST of mRNA_M-pyrifera_M_contig70203.16782.1 vs. uniprot
Match: UPI00061526FD (transmembrane protein 234 homolog isoform X1 n=2 Tax=Megachile rotundata TaxID=143995 RepID=UPI00061526FD)

HSP 1 Score: 58.5 bits (140), Expect = 6.930e-9
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 1
Query:    1 LGLVALLWGVTNPWMEVGAKSRDGVGEKTEEWGDTLSSMS----SWGFLAPYIANQAGSVLNVVLLGTYPTHIVGPITNALTVVVTALS 255
            L  VALLWGVTNP+++ GAK  + V + + ++G     ++       ++ P+I NQ GSVL  + LG     +  P+TN+LT V+TA++
Sbjct:   12 LSFVALLWGVTNPFIKKGAKGLENV-KASSKFGQFFKELAFLVTQLKYIIPFIINQLGSVLYFLTLGNADISLAVPVTNSLTFVITAIT 99          
BLAST of mRNA_M-pyrifera_M_contig70203.16782.1 vs. uniprot
Match: UPI0014791C8B (transmembrane protein 234 homolog n=2 Tax=Osmia TaxID=124287 RepID=UPI0014791C8B)

HSP 1 Score: 56.6 bits (135), Expect = 3.930e-8
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 LGLVALLWGVTNPWMEVGAKSRDGV------GEKTEEWGDTLSSMSSWGFLAPYIANQAGSVLNVVLLGTYPTHIVGPITNALTVVVTALS 255
            L LVALLWG+TNP+++ GAK  + V      G+  +E G  ++ +    ++ P+I NQ GS+L  + L      +  P+TN+LT V+TA++
Sbjct:   11 LTLVALLWGITNPFIKRGAKGLENVKSSSKFGQFFKELGFLITQLK---YIIPFIINQGGSLLYFLSLSNADISLAVPVTNSLTFVITAIT 98          
BLAST of mRNA_M-pyrifera_M_contig70203.16782.1 vs. uniprot
Match: A7SF34_NEMVE (Predicted protein n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7SF34_NEMVE)

HSP 1 Score: 56.2 bits (134), Expect = 5.020e-8
Identity = 32/90 (35.56%), Postives = 53/90 (58.89%), Query Frame = 1
Query:   10 VALLWGVTNPWMEVGAKSRD---GVGEKTEEWGDTLSSMSSWGFLAPYIANQAGSVLNVVLLGTYPTHIVGPITNALTVVVTALSSSAFG 270
            VALLWGVTNP+++ G+   +   G G   +   +    + +W ++ P++ NQ+GSVL  + LG+    +  PITN+LT ++T L+    G
Sbjct:   15 VALLWGVTNPFIKKGSAGIEDVKGKGAIRQFLAEIRYLIFNWKYMVPFLLNQSGSVLFYLTLGSADLSLAVPITNSLTFIMTTLTGRILG 104          
BLAST of mRNA_M-pyrifera_M_contig70203.16782.1 vs. uniprot
Match: UPI001C9B4301 (transmembrane protein 234 homolog isoform X1 n=2 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9B4301)

HSP 1 Score: 56.2 bits (134), Expect = 5.970e-8
Identity = 34/96 (35.42%), Postives = 58/96 (60.42%), Query Frame = 1
Query:    1 LGLVALLWGVTNPWMEVGAKSRDGV------GEKTEEWGDTLSSMSSWGFLAPYIANQAGSVLNVVLLGTYPTHIVGPITNALTVVVTALSSSAFG 270
            L +VA+LWG+TNP+++ GA+  + V      G+  +E    L+++    +L P+I NQ+GSVL  + L +    +  P+TN+LT V+TA++    G
Sbjct:   17 LVIVAILWGITNPFIKKGAQGLENVKSSSRFGQFFKELAFLLTTLK---YLVPFIINQSGSVLYFLTLSSTDISLAVPVTNSLTFVITAITGWILG 109          
BLAST of mRNA_M-pyrifera_M_contig70203.16782.1 vs. uniprot
Match: UPI0005F0B782 (transmembrane protein 234 homolog n=1 Tax=Wasmannia auropunctata TaxID=64793 RepID=UPI0005F0B782)

HSP 1 Score: 55.5 bits (132), Expect = 1.100e-7
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 LGLVALLWGVTNPWMEVGAKSRDGVGEKTEEWGDTLSSM----SSWGFLAPYIANQAGSVLNVVLLGTYPTHIVGPITNALTVVVTALS 255
            L LVA+LWGVTNP+++ GA+  + V + T  +G  +  +    +S  +L P++ NQ GSVL  ++L +    +  P++N+LT V TA++
Sbjct:   11 LCLVAILWGVTNPFIKKGAQGLEDV-KATSFYGQFVKELVFLVTSLKYLVPFLVNQCGSVLYFLILSSTDLSLAVPVSNSLTFVFTAVT 98          
BLAST of mRNA_M-pyrifera_M_contig70203.16782.1 vs. uniprot
Match: UPI00083BCE1B (transmembrane protein 234 homolog n=1 Tax=Eufriesea mexicana TaxID=516756 RepID=UPI00083BCE1B)

HSP 1 Score: 54.3 bits (129), Expect = 2.950e-7
Identity = 31/92 (33.70%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    7 LVALLWGVTNPWMEVGAKSRDGVGEKTEEWGDTLSS----MSSWGFLAPYIANQAGSVLNVVLLGTYPTHIVGPITNALTVVVTALSSSAFG 270
            LVA+LWGV+NP+++ GAK  + V E + ++G         +++  ++ P+I NQ+GSVL  + L      +  P+TN++T ++TA++    G
Sbjct:   13 LVAVLWGVSNPFIKKGAKGLENV-ESSSKFGQFFKESAFLITNLKYIIPFIINQSGSVLYFLTLSKADISLAVPVTNSITFMITAITGWILG 103          
BLAST of mRNA_M-pyrifera_M_contig70203.16782.1 vs. uniprot
Match: UPI0006237B93 (transmembrane protein 234 homolog n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI0006237B93)

HSP 1 Score: 54.3 bits (129), Expect = 3.060e-7
Identity = 32/89 (35.96%), Postives = 54/89 (60.67%), Query Frame = 1
Query:    1 LGLVALLWGVTNPWMEVGAKSRDGVGEKTEEWGDTLSS----MSSWGFLAPYIANQAGSVLNVVLLGTYPTHIVGPITNALTVVVTALS 255
            L LVA+ WGVTNP+++ GA+  + V + T  +G  +      +++  +L P+I NQ GSVL  ++L      +  P++N+LT V TA++
Sbjct:   11 LFLVAIFWGVTNPFIKRGARGLENV-KATSAYGQFIKEFIFLITNLKYLVPFIVNQCGSVLYFLILQNIDISLAVPVSNSLTFVFTAIT 98          
BLAST of mRNA_M-pyrifera_M_contig70203.16782.1 vs. uniprot
Match: A0A6J1QMG6_9HYME (transmembrane protein 234 homolog isoform X1 n=2 Tax=Temnothorax curvispinosus TaxID=300111 RepID=A0A6J1QMG6_9HYME)

HSP 1 Score: 52.4 bits (124), Expect = 1.690e-6
Identity = 33/89 (37.08%), Postives = 54/89 (60.67%), Query Frame = 1
Query:    1 LGLVALLWGVTNPWMEVGAKSRDGVGEKTEEWGDTLSSMS----SWGFLAPYIANQAGSVLNVVLLGTYPTHIVGPITNALTVVVTALS 255
            L LVA+LWGVTNP+M+ GA   + V + T  +G  +  ++    +  +L P++ NQ GSVL  + L +    +  P++N+LT V TA++
Sbjct:   11 LCLVAILWGVTNPFMKKGALGLEDV-KATSFYGQFVKEIAFLITNLKYLLPFLVNQCGSVLYFLTLQSTDLSLAVPVSNSLTFVFTAIT 98          
BLAST of mRNA_M-pyrifera_M_contig70203.16782.1 vs. uniprot
Match: A0A195CPU7_9HYME (Uncharacterized protein n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A195CPU7_9HYME)

HSP 1 Score: 51.2 bits (121), Expect = 3.430e-6
Identity = 28/88 (31.82%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 LGLVALLWGVTNPWMEVGAKSRDGVGEKT---EEWGDTLSSMSSWGFLAPYIANQAGSVLNVVLLGTYPTHIVGPITNALTVVVTALS 255
            L  VA+LWGVTNP+++ GA+  + +  K+   + + + L  +++  ++ P++ NQ GS+L  + L +    +  P++N+LT V TA++
Sbjct:   11 LCFVAILWGVTNPFIKKGAQGLENIKAKSVYGQFFKEQLFLITNLKYIVPFLLNQCGSILYFLTLQSSDLSLAVPVSNSLTFVFTAIT 98          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70203.16782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0007672EDF3.410e-937.23transmembrane protein 234 homolog n=1 Tax=Dufourea... [more]
UPI00061526FD6.930e-938.20transmembrane protein 234 homolog isoform X1 n=2 T... [more]
UPI0014791C8B3.930e-837.36transmembrane protein 234 homolog n=2 Tax=Osmia Ta... [more]
A7SF34_NEMVE5.020e-835.56Predicted protein n=3 Tax=Nematostella vectensis T... [more]
UPI001C9B43015.970e-835.42transmembrane protein 234 homolog isoform X1 n=2 T... [more]
UPI0005F0B7821.100e-737.08transmembrane protein 234 homolog n=1 Tax=Wasmanni... [more]
UPI00083BCE1B2.950e-733.70transmembrane protein 234 homolog n=1 Tax=Eufriese... [more]
UPI0006237B933.060e-735.96transmembrane protein 234 homolog n=1 Tax=Linepith... [more]
A0A6J1QMG6_9HYME1.690e-637.08transmembrane protein 234 homolog isoform X1 n=2 T... [more]
A0A195CPU7_9HYME3.430e-631.82Uncharacterized protein n=1 Tax=Cyphomyrmex costat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70203contigM-pyrifera_M_contig70203:8..277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.338828-CDS-M-pyrifera_M_contig70203:7..2771622816595.338828-CDS-M-pyrifera_M_contig70203:7..277Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70203 8..277 -
1692278067.5115328-CDS-M-pyrifera_M_contig70203:7..2771692278067.5115328-CDS-M-pyrifera_M_contig70203:7..277Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70203 8..277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70203.16782.1prot_M-pyrifera_M_contig70203.16782.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70203 8..277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70203.16782.1

>prot_M-pyrifera_M_contig70203.16782.1 ID=prot_M-pyrifera_M_contig70203.16782.1|Name=mRNA_M-pyrifera_M_contig70203.16782.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
LGLVALLWGVTNPWMEVGAKSRDGVGEKTEEWGDTLSSMSSWGFLAPYIA
NQAGSVLNVVLLGTYPTHIVGPITNALTVVVTALSSSAFG
back to top

mRNA from alignment at M-pyrifera_M_contig70203:8..277-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70203.16782.1 ID=mRNA_M-pyrifera_M_contig70203.16782.1|Name=mRNA_M-pyrifera_M_contig70203.16782.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig70203:8..277- (Macrocystis pyrifera P11B4 male)
TTAGGGCTGGTTGCTTTGCTTTGGGGTGTTACGAATCCGTGGATGGAGGT GGGAGCGAAAAGCCGTGATGGAGTGGGAGAGAAGACAGAGGAGTGGGGGG ATACTTTGTCTTCAATGTCTAGCTGGGGCTTTTTGGCACCATATATCGCA AACCAAGCTGGCAGTGTTCTCAATGTTGTCCTTCTCGGTACCTATCCCAC TCATATTGTCGGGCCTATCACAAATGCACTCACTGTTGTTGTAACGGCAC TATCATCTTCCGCTTTTGGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig70203:8..277-

>mRNA_M-pyrifera_M_contig70203.16782.1 ID=mRNA_M-pyrifera_M_contig70203.16782.1|Name=mRNA_M-pyrifera_M_contig70203.16782.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig70203:8..277- (Macrocystis pyrifera P11B4 male)
TTAGGGCTGGTTGCTTTGCTTTGGGGTGTTACGAATCCGTGGATGGAGGT
GGGAGCGAAAAGCCGTGATGGAGTGGGAGAGAAGACAGAGGAGTGGGGGG
ATACTTTGTCTTCAATGTCTAGCTGGGGCTTTTTGGCACCATATATCGCA
AACCAAGCTGGCAGTGTTCTCAATGTTGTCCTTCTCGGTACCTATCCCAC
TCATATTGTCGGGCCTATCACAAATGCACTCACTGTTGTTGTAACGGCAC
TATCATCTTCCGCTTTTGGTTTAGGGCTGGTTGCTTTGCTTTGGGGTGTT
ACGAATCCGTGGATGGAGGTGGGAGCGAAAAGCCGTGATGGAGTGGGAGA
GAAGACAGAGGAGTGGGGGGATACTTTGTCTTCAATGTCTAGCTGGGGCT
TTTTGGCACCATATATCGCAAACCAAGCTGGCAGTGTTCTCAATGTTGTC
CTTCTCGGTACCTATCCCACTCATATTGTCGGGCCTATCACAAATGCACT
CACTGTTGTTGTAACGGCACTATCATCTTCCGCTTTTGGT
back to top