mRNA_M-pyrifera_M_contig70193.16777.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70193.16777.1
Unique NamemRNA_M-pyrifera_M_contig70193.16777.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70193.16777.1 vs. uniprot
Match: D7FI59_ECTSI (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI59_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 9.740e-43
Identity = 77/102 (75.49%), Postives = 87/102 (85.29%), Query Frame = 1 
Query:  133 KAKTDEEREAVLSLVDPLVLIYDVLGELPAGVLFAPYKAILAEALAPR-WNDTEDQKAVLREGLGITPAGDDLWGPLGEATKFLHPEDRVRLLVDLVKMFSG 435
            +AKT EE++A L+LVDPLV +YDVL ELP GVLFAPYKAILAEALA   W  +E+Q A LREGLG+TPAGD+ WGPLGEATKFLHPEDRVRLLVD V+ FSG
Sbjct:  347 QAKTQEEKQAALALVDPLVSVYDVLAELPVGVLFAPYKAILAEALASSCWMGSEEQIATLREGLGLTPAGDEFWGPLGEATKFLHPEDRVRLLVDFVRAFSG 448
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BLAST of mRNA_M-pyrifera_M_contig70193.16777.1 vs. uniprot
Match: A0A835Z0R9_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0R9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.500e-27
Identity = 61/145 (42.07%), Postives = 86/145 (59.31%), Query Frame = 1 
Query:    1 QATKAIPPDASDVGNTLRNRLYGTRSLDTDDVDFAALRLHATYRKAKTDEEREAVLSLVDPLVLIYDVLGELPAGVLFAPYKAILAEALAPR-WNDTEDQKAVLREGLGITPAGDDLWGPLGEATKFLHPEDRVRLLVDLVKMFS 432
            QA KA PP   D    +R  L    S+++D++D   LRL + +  A T  E EAV+     +  +Y VLG L  G+L+ PYKA+LA  LA   W +++ Q A L+EGLG+T  G+D WGPLG+ T  + PED+V LL  L+ +F 
Sbjct:  306 QAVKAEPP--KDASGRIRQALRQCDSMESDELDLCCLRLLSDFNDADTPAEAEAVVESASKVAEVYAVLGGLAKGILYPPYKALLASRLATDGWTNSDAQIAALKEGLGMTKVGEDFWGPLGKLTMQMAPEDKVLLLTSLIPLFG 448
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70193.16777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI59_ECTSI9.740e-4375.49Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A835Z0R9_9STRA1.500e-2742.07Methyltransf_11 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70193contigM-pyrifera_M_contig70193:184..1040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue4.6e-36
Seed eggNOG ortholog2880.D7FI59
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2CYIA@1,2S4JX@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816594.8540158-CDS-M-pyrifera_M_contig70193:183..3991622816594.8540158-CDS-M-pyrifera_M_contig70193:183..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70193 184..399 -
1692278067.211097-CDS-M-pyrifera_M_contig70193:183..3991692278067.211097-CDS-M-pyrifera_M_contig70193:183..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70193 184..399 -
1622816594.8686466-CDS-M-pyrifera_M_contig70193:821..10401622816594.8686466-CDS-M-pyrifera_M_contig70193:821..1040Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70193 822..1040 -
1692278067.2300603-CDS-M-pyrifera_M_contig70193:821..10401692278067.2300603-CDS-M-pyrifera_M_contig70193:821..1040Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70193 822..1040 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70193.16777.1prot_M-pyrifera_M_contig70193.16777.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70193 184..1040 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70193.16777.1

>prot_M-pyrifera_M_contig70193.16777.1 ID=prot_M-pyrifera_M_contig70193.16777.1|Name=mRNA_M-pyrifera_M_contig70193.16777.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
QATKAIPPDASDVGNTLRNRLYGTRSLDTDDVDFAALRLHATYRKAKTDE
EREAVLSLVDPLVLIYDVLGELPAGVLFAPYKAILAEALAPRWNDTEDQK
AVLREGLGITPAGDDLWGPLGEATKFLHPEDRVRLLVDLVKMFSG
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mRNA from alignment at M-pyrifera_M_contig70193:184..1040-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70193.16777.1 ID=mRNA_M-pyrifera_M_contig70193.16777.1|Name=mRNA_M-pyrifera_M_contig70193.16777.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=857bp|location=Sequence derived from alignment at M-pyrifera_M_contig70193:184..1040- (Macrocystis pyrifera P11B4 male)
CAGGCGACGAAGGCGATTCCCCCCGACGCCTCGGACGTCGGGAACACCCT
CCGGAACCGCCTGTACGGCACCAGGAGCCTGGACACGGACGATGTTGACT
TCGCCGCGCTGAGGCTGCACGCGACGTACCGCAAGGCCAAGACGGACGAG
GAGCGGGAGGCGGTGCTGTCGCTCGTGGACCCTCTGGTGTTGATCTACGA
TGTGCTGGGCGAGCTGCCGGTAACCTCAATCCTAACAAAACATTTTATAT
ATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATTCGA
CCCTCTTTCTTGTCTGAACAGGCCAACTTTCAACTACTGTAGGGGAAATC
GGCGTTTCAAGGGTGGATGGGTTGTGTGCCCATTTGTCGTGAACCGTTGT
GCCCCCGGCCGCTGCGGACACTTAATCCCTCCCCACACGCACACACACTT
TTTCACCCACCCACCCCGCCCTCCCACTCACCCCCACCCCCAACCCCAAC
CGAATACTAACCCCACTCTCCAAACCTCCCCCAATCCCCATCCCTACGCG
GCCACCCACCCACTCACCTACCTGTTGCCGCGACGACGCATCTTGTTCTT
TTCGAAAAAAAAAAATCGAAAATTGCGACGACGAGTAACAGGCGGGCGTC
TTGTTCGCCCCCTACAAAGCCATCCTGGCAGAGGCCCTCGCCCCCCGATG
GAACGACACGGAGGACCAGAAGGCGGTGCTTCGGGAGGGACTGGGGATCA
CCCCCGCCGGGGATGACTTGTGGGGCCCCCTGGGGGAGGCGACCAAGTTT
TTGCACCCGGAGGACCGGGTCCGGCTGTTGGTTGATCTGGTGAAGATGTT
CAGTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70193:184..1040-

>mRNA_M-pyrifera_M_contig70193.16777.1 ID=mRNA_M-pyrifera_M_contig70193.16777.1|Name=mRNA_M-pyrifera_M_contig70193.16777.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig70193:184..1040- (Macrocystis pyrifera P11B4 male)
CAGGCGACGAAGGCGATTCCCCCCGACGCCTCGGACGTCGGGAACACCCT
CCGGAACCGCCTGTACGGCACCAGGAGCCTGGACACGGACGATGTTGACT
TCGCCGCGCTGAGGCTGCACGCGACGTACCGCAAGGCCAAGACGGACGAG
GAGCGGGAGGCGGTGCTGTCGCTCGTGGACCCTCTGGTGTTGATCTACGA
TGTGCTGGGCGAGCTGCCGCAGGCGACGAAGGCGATTCCCCCCGACGCCT
CGGACGTCGGGAACACCCTCCGGAACCGCCTGTACGGCACCAGGAGCCTG
GACACGGACGATGTTGACTTCGCCGCGCTGAGGCTGCACGCGACGTACCG
CAAGGCCAAGACGGACGAGGAGCGGGAGGCGGTGCTGTCGCTCGTGGACC
CTCTGGTGTTGATCTACGATGTGCTGGGCGAGCTGCCGGCGGGCGTCTTG
TTCGCCCCCTACAAAGCCATCCTGGCAGAGGCCCTCGCCCCCCGATGGAA
CGACACGGAGGACCAGAAGGCGGTGCTTCGGGAGGGACTGGGGATCACCC
CCGCCGGGGATGACTTGTGGGGCCCCCTGGGGGAGGCGACCAAGTTTTTG
CACCCGGAGGACCGGGTCCGGCTGTTGGTTGATCTGGTGAAGATGTTCAG
TGGCGCGGGCGTCTTGTTCGCCCCCTACAAAGCCATCCTGGCAGAGGCCC
TCGCCCCCCGATGGAACGACACGGAGGACCAGAAGGCGGTGCTTCGGGAG
GGACTGGGGATCACCCCCGCCGGGGATGACTTGTGGGGCCCCCTGGGGGA
GGCGACCAAGTTTTTGCACCCGGAGGACCGGGTCCGGCTGTTGGTTGATC
TGGTGAAGATGTTCAGTGGC
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