mRNA_M-pyrifera_M_contig70152.16772.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70152.16772.1
Unique NamemRNA_M-pyrifera_M_contig70152.16772.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70152.16772.1 vs. uniprot
Match: UPI00046216DE (PIN domain-like protein n=1 Tax=Trametes versicolor (strain FP-101664) TaxID=717944 RepID=UPI00046216DE)

HSP 1 Score: 166 bits (419), Expect = 8.560e-47
Identity = 93/220 (42.27%), Postives = 132/220 (60.00%), Query Frame = 1
Query:    1 RHAKRVAALARGLEMQALGKHEEARKYFTQGIDVSPQLAFGLLKALQDAGVETIIAPYEADAQLAFLARTGQIHAVITEDGDLLAYGCPRVFFKMADDGTGREV------EFQTLFNTEHDPSDPLDLRRFSGDKFLTLCCLMGCDYCPPVQSVGRKTAWDIARRNAGVDDAVHALIRTKGRLAVPKEYRNNLARARMTFLHQRVYDPRIGHTVFLTPLP 642
            R  +R   LAR   + A GKH +AR+Y+ + +DV+PQ+A+ L+KAL+  GV  ++APYEADAQLA+L R G +  +ITED DLL +GC  V FK+  D     V      +F  + +T    +  L L  +S  +F T+  L GCDY P +  +G KTAW + R++  V++ + AL R +G+  +P+ Y +    A   FLHQRVYDP  G  V LTPLP
Sbjct:   92 RKQRRDENLARANALAAQGKHSQAREYYVKCVDVTPQMAYQLIKALRAEGVPYVVAPYEADAQLAYLERIGAVDGIITEDSDLLVFGCKNVLFKL--DHAASTVTCIARKDFAAIASTA---AGGLSLVGWSDAQFRTMAILSGCDYLPSIPGIGLKTAWTLLRKHKTVENTLSAL-RLEGKKKIPQGYLDAFRLAEKVFLHQRVYDPAQGCLVHLTPLP 305          
BLAST of mRNA_M-pyrifera_M_contig70152.16772.1 vs. uniprot
Match: R7SV44_DICSQ (Exonuclease 1 n=3 Tax=Dichomitus squalens TaxID=114155 RepID=R7SV44_DICSQ)

HSP 1 Score: 166 bits (419), Expect = 9.970e-47
Identity = 94/220 (42.73%), Postives = 133/220 (60.45%), Query Frame = 1
Query:    1 RHAKRVAALARGLEMQALGKHEEARKYFTQGIDVSPQLAFGLLKALQDAGVETIIAPYEADAQLAFLARTGQIHAVITEDGDLLAYGCPRVFFKMADDGTGREV------EFQTLFNTEHDPSDPLDLRRFSGDKFLTLCCLMGCDYCPPVQSVGRKTAWDIARRNAGVDDAVHALIRTKGRLAVPKEYRNNLARARMTFLHQRVYDPRIGHTVFLTPLP 642
            R A+R  ALAR   + A G+H  AR+ + + +DV+PQ+A+ L+KAL+  GV  ++APYEADAQLA+L R G +  ++TED DLL +GC  V FK+  D     V      +F  + + +   S  L L  +S  +F T+  L GCDY P +  +G KTAW + R++  V++ V AL R +G+  VPK Y +   RA   F+HQRVYDP     V+LTPLP
Sbjct:   92 RRARRAEALARANALAAQGEHARARECYVKCVDVTPQMAYQLIKALRVEGVPYVVAPYEADAQLAYLERIGLVDGIMTEDSDLLVFGCKNVLFKL--DPAAATVTHISRADFAAVASADGGGSG-LSLLGWSDAQFRTMAILSGCDYLPSIPGIGLKTAWALLRKHRTVENMVDAL-RLEGKKKVPKGYLDAFRRAERVFMHQRVYDPAQECLVYLTPLP 307          
BLAST of mRNA_M-pyrifera_M_contig70152.16772.1 vs. uniprot
Match: A0A5C3QW24_9AGAR (Exonuclease 1 n=1 Tax=Pterula gracilis TaxID=1884261 RepID=A0A5C3QW24_9AGAR)

HSP 1 Score: 163 bits (412), Expect = 9.280e-46
Identity = 88/216 (40.74%), Postives = 128/216 (59.26%), Query Frame = 1
Query:    1 RHAKRVAALARGLEMQALGKHEEARKYFTQGIDVSPQLAFGLLKALQDAGVETIIAPYEADAQLAFLARTGQIHAVITEDGDLLAYGCPRVFFKMADDGTGREVEFQTLFNTEHDPS---DPLDLRRFSGDKFLTLCCLMGCDYCPPVQSVGRKTAWDIARRNAGVDDAVHALIRTKGRLAVPKEYRNNLARARMTFLHQRVYDPRIGHTVFLTPL 639
            R A+R   +ARG +  A G+H +AR+ + + +DVSP++A+ L+KAL+   V  ++APYEADAQLA+L R   I  +ITED DLL +GC RVF+K+ D  T   V          D S     + L  +S  +F  +  L GCDY P +  +G KTAW + +++   +  V A IR  G+  VPK+Y ++   A   FLHQRV+DP+    V+LTP+
Sbjct:   92 RRARRAENMARGKQFTAKGQHTQARECYVKAVDVSPEMAYQLIKALRADSVSYVVAPYEADAQLAYLERASIIDGIITEDSDLLVFGCKRVFYKL-DTVTSSLVSISRSDFAYIDGSAQCSSISLVSWSDAQFRAMAILSGCDYLPSISGIGLKTAWSLLKKHKSAEGVVRA-IRLDGKKTVPKDYLHHYRLAEACFLHQRVFDPKTQQIVYLTPI 305          
BLAST of mRNA_M-pyrifera_M_contig70152.16772.1 vs. uniprot
Match: UPI000441814A (PIN domain-like protein n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=UPI000441814A)

HSP 1 Score: 162 bits (410), Expect = 1.750e-45
Identity = 90/210 (42.86%), Postives = 126/210 (60.00%), Query Frame = 1
Query:    1 RHAKRVAALARGLEMQALGKHEEARKYFTQGIDVSPQLAFGLLKALQDAGVETIIAPYEADAQLAFLARTGQIHAVITEDGDLLAYGCPRVFFKMADDGTGREVEFQTLFNTEHDPSDPLDLRRFSGDKFLTLCCLMGCDYCPPVQSVGRKTAWDIARRNAGVDDAVHALIRTKGRLAVPKEYRNNLARARMTFLHQRVYDPRIGHTVFL 630
            R  +R   LA+G ++ A G+H +AR+YF + IDV+PQ+A+ L+KAL+   V  ++APYEADAQLA+L RTG + A++TED DLL +GC  V FK+  D     V   +  +     S  + L  +S  +F  +  L GCDY P +  VG KTAW + R++  V++AV AL R +G+  VP  Y +    A   FLHQRVYDP     V L
Sbjct:   92 RAKRREENLAKGKQLAAQGRHSQAREYFVKCIDVTPQMAYQLIKALKAENVPYVVAPYEADAQLAYLERTGAVSAILTEDSDLLVFGCRHVLFKL--DHVSATVSAVSRSDFGSLSSSDITLLGWSDVQFRAMAILSGCDYLPSIPGVGLKTAWALLRKHKNVENAVRAL-RLEGKKPVPDGYLDAFRLAEKVFLHQRVYDPAQARLVHL 298          
BLAST of mRNA_M-pyrifera_M_contig70152.16772.1 vs. uniprot
Match: A0A067NYL7_PLEOS (Exonuclease 1 n=2 Tax=Pleurotus ostreatus TaxID=5322 RepID=A0A067NYL7_PLEOS)

HSP 1 Score: 162 bits (409), Expect = 3.100e-45
Identity = 87/211 (41.23%), Postives = 123/211 (58.29%), Query Frame = 1
Query:    1 RHAKRVAALARGLEMQALGKHEEARKYFTQGIDVSPQLAFGLLKALQDAGVETIIAPYEADAQLAFLARTGQIHAVITEDGDLLAYGCPRVFFKMADDGTGREVEFQTLFNTEHDPSDPLDLRRFSGDKFLTLCCLMGCDYCPPVQSVGRKTAWDIARRNAGVDDAVHALIRTKGRLAVPKEYRNNLARARMTFLHQRVYDPRIGHTVFLT 633
            R  +R   LARG  + A GKH +AR Y+ + +DV+PQ+A+ L+KAL+   V  ++APYEADAQLA+L R G +  +ITED DLL +GC  V FK+ D  +      +  F++  DP+  +    +S  +F ++  L GCDY P +  VG KTAW + +++   +  V  L R +G+  VP  Y      A   FLHQRVYDP  G  V LT
Sbjct:   92 RKQRREENLARGHALAAQGKHSQARDYYVKCVDVTPQMAYQLIKALKAESVSYVVAPYEADAQLAYLERIGLVDGIITEDSDLLVFGCRNVLFKLDDVASVITSISRVDFSSVSDPAGGVSFIGWSDAQFRSMAILSGCDYLPSIPGVGLKTAWSMLKKHKTAEKVVQVL-RLEGKKTVPTGYMKRFRLAEKCFLHQRVYDPLQGKLVHLT 301          
BLAST of mRNA_M-pyrifera_M_contig70152.16772.1 vs. uniprot
Match: A0A371CS78_9APHY (Exonuclease 1 n=4 Tax=Polyporaceae TaxID=5317 RepID=A0A371CS78_9APHY)

HSP 1 Score: 161 bits (408), Expect = 3.760e-45
Identity = 91/218 (41.74%), Postives = 131/218 (60.09%), Query Frame = 1
Query:    1 RHAKRVAALARGLEMQALGKHEEARKYFTQGIDVSPQLAFGLLKALQDAGVETIIAPYEADAQLAFLARTGQIHAVITEDGDLLAYGCPRVFFKMADDGTGREV-----EFQTLFNTEHDPSDPLDLRRFSGDKFLTLCCLMGCDYCPPVQSVGRKTAWDIARRNAGVDDAVHALIRTKGRLAVPKEYRNNLARARMTFLHQRVYDPRIGHTVFLTPL 639
            R  +R   ++R   + A GKH +AR+Y+ + +DV+PQ+A+ L+KAL+  GV  ++APYEADAQLA+L R G +  +ITED DLL +GC +V FK+ D  T         +F  + +T    +  L L  +S  +F T+  L GCDY P +  +G KTAW + R++  V++ V AL R +G+  VP+ Y +    A   FLHQRVYDP     V LTPL
Sbjct:   92 RKQRREENMSRANALAAQGKHSQAREYYVKCVDVTPQMAYQLIKALRAEGVPYVVAPYEADAQLAYLERIGVVDGIITEDSDLLVFGCKKVLFKL-DTPTSTVTCISREDFAAVASTS---AGGLSLLGWSDAQFRTMAILSGCDYLPSIPGIGLKTAWTLLRKHQTVENLVSAL-RLEGKKKVPEGYLDAFRLAEKVFLHQRVYDPAQEELVHLTPL 304          
BLAST of mRNA_M-pyrifera_M_contig70152.16772.1 vs. uniprot
Match: W4JWC7_HETIT (Exonuclease 1 n=1 Tax=Heterobasidion irregulare (strain TC 32-1) TaxID=747525 RepID=W4JWC7_HETIT)

HSP 1 Score: 161 bits (408), Expect = 4.940e-45
Identity = 87/214 (40.65%), Postives = 126/214 (58.88%), Query Frame = 1
Query:    1 RHAKRVAALARGLEMQALGKHEEARKYFTQGIDVSPQLAFGLLKALQDAGVETIIAPYEADAQLAFLARTGQIHAVITEDGDLLAYGCPRVFFKMADDGTGREVEFQTLFNTEHDPSDPLDLRRFSGDKFLTLCCLMGCDYCPPVQSVGRKTAWDIARRNAGVDDAVHALIRTKGRLAVPKEYRNNLARARMTFLHQRVYDPRIGHTVFLTPLP 642
            R  +R   L RG  + A G+H +AR+ + + +DV+PQ+A+  +KAL+   V  I+APYEADAQLA+L RTG +  +ITED DLL +GC  V FK+           +  F + +D S  L LR +S  +F ++  L GCDY P +  VG KTAW + R++   ++ + AL + +G+  VP+ Y      A   FLHQRVYDP     V+L P+P
Sbjct:   92 RRERREENLMRGNALAAQGRHAQARELYCKCLDVTPQMAYQFIKALRAENVPYIVAPYEADAQLAYLERTGVVDGIITEDSDLLVFGCKNVLFKLDSVSATLTSISRKDFGSVNDASGGLSLRGWSDVEFRSMAILSGCDYLPSIPGVGLKTAWTLLRKHRTAENVIRAL-KLEGKKDVPRGYLEAFKLAEKVFLHQRVYDPVQEKLVYLHPIP 304          
BLAST of mRNA_M-pyrifera_M_contig70152.16772.1 vs. uniprot
Match: K5WFF3_PHACS (Exonuclease 1 n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5WFF3_PHACS)

HSP 1 Score: 160 bits (404), Expect = 1.490e-44
Identity = 87/215 (40.47%), Postives = 125/215 (58.14%), Query Frame = 1
Query:    1 RHAKRVAALARGLEMQALGKHEEARKYFTQGIDVSPQLAFGLLKALQDAGVETIIAPYEADAQLAFLARTGQIHAVITEDGDLLAYGCPRVFFKMAD-DGTGREVEFQTLFNTEHDPSDPLDLRRFSGDKFLTLCCLMGCDYCPPVQSVGRKTAWDIARRNAGVDDAVHALIRTKGRLAVPKEYRNNLARARMTFLHQRVYDPRIGHTVFLTPLP 642
            R  KR   LAR   + A GKH +AR+Y+ + IDV+PQ+AF  +KAL+   V  ++APYEADAQ+A+L R G +  ++TED DLL +GC  V  K+   + T   +  Q   +        + L  +S  +F  +  L GCDY P + SVG KTAW + R++  V++ + AL R +G+ ++P+ Y      A   FLHQRVYDP     V L+PLP
Sbjct:   92 RKKKREENLARANSLAAQGKHTQAREYYVKCIDVTPQMAFQFIKALRAENVAYVVAPYEADAQMAYLERIGLVDGILTEDSDLLVFGCKSVLLKLDTVESTVISISRQDFASLTASSGGGISLLGWSDVQFRAMAILSGCDYLPSIPSVGLKTAWSLLRKHGCVENVIRAL-RIEGKKSIPQGYLQAFRLAEKVFLHQRVYDPLKDMLVHLSPLP 305          
BLAST of mRNA_M-pyrifera_M_contig70152.16772.1 vs. uniprot
Match: A0A0C3S8C9_PHLGI (Exonuclease 1 n=1 Tax=Phlebiopsis gigantea 11061_1 CR5-6 TaxID=745531 RepID=A0A0C3S8C9_PHLGI)

HSP 1 Score: 158 bits (400), Expect = 5.870e-44
Identity = 87/215 (40.47%), Postives = 124/215 (57.67%), Query Frame = 1
Query:    1 RHAKRVAALARGLEMQALGKHEEARKYFTQGIDVSPQLAFGLLKALQDAGVETIIAPYEADAQLAFLARTGQIHAVITEDGDLLAYGCPRVFFKM-ADDGTGREVEFQTLFNTEHDPSDPLDLRRFSGDKFLTLCCLMGCDYCPPVQSVGRKTAWDIARRNAGVDDAVHALIRTKGRLAVPKEYRNNLARARMTFLHQRVYDPRIGHTVFLTPLP 642
            R  KR   LAR   + A GKH +AR+++ + IDV+PQ+A+  +KAL+   V  ++APYEADAQ+A+L RTG +  ++TED DLL +GC  V  K+ A +GT   +      +        + L  +S  +F  +  L GCDY   + SVG KTAW + R++  V++ +  L R +G+  VPK Y      A   FLHQRVYDP     V LTP+P
Sbjct:   92 RKKKREENLARANALTAQGKHTQAREFYVKCIDVTPQMAYQFIKALRAENVAYVVAPYEADAQMAYLERTGTVDGILTEDSDLLVFGCKSVLLKLDAVEGTVISISRADFASMVSSAGGGISLLGWSDVQFRAMAILSGCDYLASIPSVGLKTAWSLLRKHNTVENVIRVL-RIEGKKNVPKGYLQAFKLAEKVFLHQRVYDPTQQRLVHLTPIP 305          
BLAST of mRNA_M-pyrifera_M_contig70152.16772.1 vs. uniprot
Match: UPI000440F5BB (PIN domain-like protein n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000440F5BB)

HSP 1 Score: 158 bits (400), Expect = 6.170e-44
Identity = 91/217 (41.94%), Postives = 127/217 (58.53%), Query Frame = 1
Query:    1 RHAKRVAALARGLEMQALGKHEEARKYFTQGIDVSPQLAFGLLKALQDAGVETIIAPYEADAQLAFLARTGQIHAVITEDGDLLAYGCPRVFFKMADDGTGREVEFQTLFN--TEHDP-SDPLDLRRFSGDKFLTLCCLMGCDYCPPVQSVGRKTAWDIARRNAGVDDAVHALIRTKGRLAVPKEYRNNLARARMTFLHQRVYDPRIGHTVFLTPLP 642
            R  +R   L RG  + A G+H +AR ++T+ +DV+PQ+A+ L+KAL+   V  I+APYEADAQLA+L R G +  +ITED DLL +GC  V FK+           ++ F+  T   P S+ L L+ +S  +F  +  L GCDY P V  VG KTAW + R++   +  V AL R +G+  VP+ Y     RA   FLHQRVYDP +   V L  +P
Sbjct:   92 RQQRRQENLERGNVLAAQGRHSQARDFYTKCVDVTPQMAYQLIKALKAENVPYIVAPYEADAQLAYLERQGVVQGIITEDSDLLVFGCQNVHFKLDSVNATITSISRSQFSSVTATSPFSNGLSLQGWSDVEFRAMAILSGCDYLPSVPGVGLKTAWTLLRKHGKWEKVVRAL-RLEGKKEVPRGYEAMFKRAEKVFLHQRVYDPTVEALVCLAEIP 307          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70152.16772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00046216DE8.560e-4742.27PIN domain-like protein n=1 Tax=Trametes versicolo... [more]
R7SV44_DICSQ9.970e-4742.73Exonuclease 1 n=3 Tax=Dichomitus squalens TaxID=11... [more]
A0A5C3QW24_9AGAR9.280e-4640.74Exonuclease 1 n=1 Tax=Pterula gracilis TaxID=18842... [more]
UPI000441814A1.750e-4542.86PIN domain-like protein n=1 Tax=Punctularia strigo... [more]
A0A067NYL7_PLEOS3.100e-4541.23Exonuclease 1 n=2 Tax=Pleurotus ostreatus TaxID=53... [more]
A0A371CS78_9APHY3.760e-4541.74Exonuclease 1 n=4 Tax=Polyporaceae TaxID=5317 RepI... [more]
W4JWC7_HETIT4.940e-4540.65Exonuclease 1 n=1 Tax=Heterobasidion irregulare (s... [more]
K5WFF3_PHACS1.490e-4440.47Exonuclease 1 n=1 Tax=Phanerochaete carnosa (strai... [more]
A0A0C3S8C9_PHLGI5.870e-4440.47Exonuclease 1 n=1 Tax=Phlebiopsis gigantea 11061_1... [more]
UPI000440F5BB6.170e-4441.94PIN domain-like protein n=1 Tax=Stereum hirsutum (... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70152contigM-pyrifera_M_contig70152:546..1187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score164.5
Seed ortholog evalue5.6e-38
Seed eggNOG ortholog202698.XP_007384509.1
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000278,GO:0000706,GO:0000710,GO:0000723,GO:0000729,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006298,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0008309,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0022402,GO:0022414,GO:0031297,GO:0032200,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0035312,GO:0035861,GO:0042592,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044786,GO:0045005,GO:0046483,GO:0050896,GO:0051276,GO:0051321,GO:0051716,GO:0051908,GO:0060249,GO:0061982,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090734,GO:0097159,GO:0110025,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1903211,GO:1990426,GO:1990505
EggNOG free text desc.PIN domain-like protein
EggNOG OGs2287M@155619,38FBD@33154,3H13H@355688,3NWMW@4751,3UYHY@5204,COG0258@1,KOG2518@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons1
Model size642
Cds size642
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816594.4972641-CDS-M-pyrifera_M_contig70152:545..11871622816594.4972641-CDS-M-pyrifera_M_contig70152:545..1187Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70152 546..1187 -
1692278067.0537145-CDS-M-pyrifera_M_contig70152:545..11871692278067.0537145-CDS-M-pyrifera_M_contig70152:545..1187Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70152 546..1187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70152.16772.1prot_M-pyrifera_M_contig70152.16772.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70152 546..1187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70152.16772.1

>prot_M-pyrifera_M_contig70152.16772.1 ID=prot_M-pyrifera_M_contig70152.16772.1|Name=mRNA_M-pyrifera_M_contig70152.16772.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=214bp
RHAKRVAALARGLEMQALGKHEEARKYFTQGIDVSPQLAFGLLKALQDAG
VETIIAPYEADAQLAFLARTGQIHAVITEDGDLLAYGCPRVFFKMADDGT
GREVEFQTLFNTEHDPSDPLDLRRFSGDKFLTLCCLMGCDYCPPVQSVGR
KTAWDIARRNAGVDDAVHALIRTKGRLAVPKEYRNNLARARMTFLHQRVY
DPRIGHTVFLTPLP
back to top

mRNA from alignment at M-pyrifera_M_contig70152:546..1187-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70152.16772.1 ID=mRNA_M-pyrifera_M_contig70152.16772.1|Name=mRNA_M-pyrifera_M_contig70152.16772.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig70152:546..1187- (Macrocystis pyrifera P11B4 male)
CGGCATGCGAAGCGGGTGGCAGCATTGGCACGGGGCTTGGAGATGCAGGC CTTGGGGAAGCATGAGGAAGCACGCAAGTACTTTACTCAAGGGATTGACG TTTCTCCACAGCTTGCGTTTGGGTTACTCAAGGCGCTGCAGGATGCAGGT GTTGAGACTATCATTGCGCCATATGAGGCGGACGCACAGCTCGCATTTCT TGCTAGAACTGGTCAAATCCACGCTGTGATTACGGAAGATGGCGATTTGC TAGCATATGGCTGCCCTCGTGTGTTTTTCAAAATGGCAGATGATGGAACA GGTCGAGAGGTGGAATTTCAAACGTTGTTCAATACGGAGCATGATCCATC AGACCCACTAGACTTGCGCAGGTTTTCTGGAGACAAATTCCTTACATTGT GTTGTCTTATGGGCTGTGATTATTGTCCTCCAGTGCAGAGTGTGGGGAGA AAAACAGCATGGGATATTGCAAGACGCAATGCTGGCGTGGATGATGCAGT TCATGCACTGATTCGTACCAAAGGGCGATTGGCAGTGCCAAAAGAATATC GCAACAACCTTGCACGTGCTCGGATGACTTTTTTACACCAAAGAGTCTAT GACCCTCGCATTGGACATACAGTGTTCCTTACCCCGCTCCCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig70152:546..1187-

>mRNA_M-pyrifera_M_contig70152.16772.1 ID=mRNA_M-pyrifera_M_contig70152.16772.1|Name=mRNA_M-pyrifera_M_contig70152.16772.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1284bp|location=Sequence derived from alignment at M-pyrifera_M_contig70152:546..1187- (Macrocystis pyrifera P11B4 male)
CGGCATGCGAAGCGGGTGGCAGCATTGGCACGGGGCTTGGAGATGCAGGC
CTTGGGGAAGCATGAGGAAGCACGCAAGTACTTTACTCAAGGGATTGACG
TTTCTCCACAGCTTGCGTTTGGGTTACTCAAGGCGCTGCAGGATGCAGGT
GTTGAGACTATCATTGCGCCATATGAGGCGGACGCACAGCTCGCATTTCT
TGCTAGAACTGGTCAAATCCACGCTGTGATTACGGAAGATGGCGATTTGC
TAGCATATGGCTGCCCTCGTGTGTTTTTCAAAATGGCAGATGATGGAACA
GGTCGAGAGGTGGAATTTCAAACGTTGTTCAATACGGAGCATGATCCATC
AGACCCACTAGACTTGCGCAGGTTTTCTGGAGACAAATTCCTTACATTGT
GTTGTCTTATGGGCTGTGATTATTGTCCTCCAGTGCAGAGTGTGGGGAGA
AAAACAGCATGGGATATTGCAAGACGCAATGCTGGCGTGGATGATGCAGT
TCATGCACTGATTCGTACCAAAGGGCGATTGGCAGTGCCAAAAGAATATC
GCAACAACCTTGCACGTGCTCGGATGACTTTTTTACACCAAAGAGTCTAT
GACCCTCGCATTGGACATACAGTGTTCCTTACCCCGCTCCCCCGGCATGC
GAAGCGGGTGGCAGCATTGGCACGGGGCTTGGAGATGCAGGCCTTGGGGA
AGCATGAGGAAGCACGCAAGTACTTTACTCAAGGGATTGACGTTTCTCCA
CAGCTTGCGTTTGGGTTACTCAAGGCGCTGCAGGATGCAGGTGTTGAGAC
TATCATTGCGCCATATGAGGCGGACGCACAGCTCGCATTTCTTGCTAGAA
CTGGTCAAATCCACGCTGTGATTACGGAAGATGGCGATTTGCTAGCATAT
GGCTGCCCTCGTGTGTTTTTCAAAATGGCAGATGATGGAACAGGTCGAGA
GGTGGAATTTCAAACGTTGTTCAATACGGAGCATGATCCATCAGACCCAC
TAGACTTGCGCAGGTTTTCTGGAGACAAATTCCTTACATTGTGTTGTCTT
ATGGGCTGTGATTATTGTCCTCCAGTGCAGAGTGTGGGGAGAAAAACAGC
ATGGGATATTGCAAGACGCAATGCTGGCGTGGATGATGCAGTTCATGCAC
TGATTCGTACCAAAGGGCGATTGGCAGTGCCAAAAGAATATCGCAACAAC
CTTGCACGTGCTCGGATGACTTTTTTACACCAAAGAGTCTATGACCCTCG
CATTGGACATACAGTGTTCCTTACCCCGCTCCCC
back to top