mRNA_M-pyrifera_M_contig70116.16767.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70116.16767.1
Unique NamemRNA_M-pyrifera_M_contig70116.16767.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70116.16767.1 vs. uniprot
Match: F2U7Y8_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U7Y8_SALR5)

HSP 1 Score: 73.2 bits (178), Expect = 2.580e-12
Identity = 52/143 (36.36%), Postives = 72/143 (50.35%), Query Frame = 1 
Query:   22 PPGEGIVRLFHGTTAASATNIIEHGVNLDLCHEHCDFGRAFYTTEQFSFALFCAFTAYVGSGMPRNVSSAPAVLVFDIPAGEL---DAIAVDLEGELWKKAVSGFRRGGLRE-KLG--DSYRRVVAAEALRGPLCNNATLTES 432
            P GE  VRLFHGTT A+AT I++ G+      + CDFG+AF TT  F +A+  A+   V S          A+LVFD+   +L     +    +   WK  +   RR  LR+ K G    + R   AE + G +C NAT  E+
Sbjct:  532 PKGETTVRLFHGTTRAAATAILQDGIEAARLGDACDFGKAFCTTTSFPYAVQYAYDRAVASS---RADDDMAILVFDLRTDKLPRGSKLLTLRDSTDWKLLLEHCRRCKLRQLKKGYPGLHTRYSNAELVIGNICGNATQIET 671
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70116.16767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
F2U7Y8_SALR52.580e-1236.36Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70116contigM-pyrifera_M_contig70116:331..762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816594.2030177-CDS-M-pyrifera_M_contig70116:330..7621622816594.2030177-CDS-M-pyrifera_M_contig70116:330..762Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70116 331..762 -
1692278066.960568-CDS-M-pyrifera_M_contig70116:330..7621692278066.960568-CDS-M-pyrifera_M_contig70116:330..762Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70116 331..762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70116.16767.1prot_M-pyrifera_M_contig70116.16767.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70116 331..762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70116.16767.1

>prot_M-pyrifera_M_contig70116.16767.1 ID=prot_M-pyrifera_M_contig70116.16767.1|Name=mRNA_M-pyrifera_M_contig70116.16767.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
MRDDVLSPPGEGIVRLFHGTTAASATNIIEHGVNLDLCHEHCDFGRAFYT
TEQFSFALFCAFTAYVGSGMPRNVSSAPAVLVFDIPAGELDAIAVDLEGE
LWKKAVSGFRRGGLREKLGDSYRRVVAAEALRGPLCNNATLTES
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mRNA from alignment at M-pyrifera_M_contig70116:331..762-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70116.16767.1 ID=mRNA_M-pyrifera_M_contig70116.16767.1|Name=mRNA_M-pyrifera_M_contig70116.16767.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig70116:331..762- (Macrocystis pyrifera P11B4 male)
ATGCGCGACGATGTTCTATCCCCGCCCGGGGAAGGCATCGTGCGGCTGTT
CCACGGAACCACGGCTGCCAGCGCCACCAACATCATTGAGCACGGCGTCA
ACCTCGACTTGTGCCACGAGCACTGCGACTTCGGCAGGGCCTTCTACACA
ACGGAACAGTTTTCCTTTGCGCTGTTCTGCGCCTTCACCGCGTATGTTGG
GTCGGGCATGCCGCGCAACGTCTCCAGCGCCCCTGCGGTGCTCGTGTTCG
ACATTCCAGCTGGCGAGCTCGACGCTATCGCCGTGGACCTGGAGGGGGAG
CTATGGAAGAAGGCAGTGTCTGGTTTCCGTCGGGGAGGGCTGCGGGAGAA
GCTGGGCGACAGCTACCGTCGTGTTGTCGCTGCTGAGGCACTTCGCGGCC
CGCTCTGCAACAACGCAACGTTGACGGAGTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70116:331..762-

>mRNA_M-pyrifera_M_contig70116.16767.1 ID=mRNA_M-pyrifera_M_contig70116.16767.1|Name=mRNA_M-pyrifera_M_contig70116.16767.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig70116:331..762- (Macrocystis pyrifera P11B4 male)
ATGCGCGACGATGTTCTATCCCCGCCCGGGGAAGGCATCGTGCGGCTGTT
CCACGGAACCACGGCTGCCAGCGCCACCAACATCATTGAGCACGGCGTCA
ACCTCGACTTGTGCCACGAGCACTGCGACTTCGGCAGGGCCTTCTACACA
ACGGAACAGTTTTCCTTTGCGCTGTTCTGCGCCTTCACCGCGTATGTTGG
GTCGGGCATGCCGCGCAACGTCTCCAGCGCCCCTGCGGTGCTCGTGTTCG
ACATTCCAGCTGGCGAGCTCGACGCTATCGCCGTGGACCTGGAGGGGGAG
CTATGGAAGAAGGCAGTGTCTGGTTTCCGTCGGGGAGGGCTGCGGGAGAA
GCTGGGCGACAGCTACCGTCGTGTTGTCGCTGCTGAGGCACTTCGCGGCC
CGCTCTGCAACAACGCAACGTTGACGGAGTCGATGCGCGACGATGTTCTA
TCCCCGCCCGGGGAAGGCATCGTGCGGCTGTTCCACGGAACCACGGCTGC
CAGCGCCACCAACATCATTGAGCACGGCGTCAACCTCGACTTGTGCCACG
AGCACTGCGACTTCGGCAGGGCCTTCTACACAACGGAACAGTTTTCCTTT
GCGCTGTTCTGCGCCTTCACCGCGTATGTTGGGTCGGGCATGCCGCGCAA
CGTCTCCAGCGCCCCTGCGGTGCTCGTGTTCGACATTCCAGCTGGCGAGC
TCGACGCTATCGCCGTGGACCTGGAGGGGGAGCTATGGAAGAAGGCAGTG
TCTGGTTTCCGTCGGGGAGGGCTGCGGGAGAAGCTGGGCGACAGCTACCG
TCGTGTTGTCGCTGCTGAGGCACTTCGCGGCCCGCTCTGCAACAACGCAA
CGTTGACGGAGTCG
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