mRNA_M-pyrifera_M_contig70043.16760.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70043.16760.1
Unique NamemRNA_M-pyrifera_M_contig70043.16760.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig70043.16760.1 vs. uniprot
Match: A0A7L2RD66_9PASS (MORN5 protein (Fragment) n=1 Tax=Neodrepanis coruscans TaxID=254563 RepID=A0A7L2RD66_9PASS)

HSP 1 Score: 50.8 bits (120), Expect = 7.000e-6
Identity = 19/45 (42.22%), Postives = 24/45 (53.33%), Query Frame = 1 
Query:  100 GLILVRAPNGATYQGWMWKGVRHGRGRLLYKDGSMYVGTWSNGVP 234
            G    + P G  Y+GW+W G+ HG G LL+  G  Y   W  GVP
Sbjct:    4 GYGWYKLPTGTEYRGWLWDGMFHGPGELLFSTGGKYQALWDRGVP 48
[Close]
BLAST of mRNA_M-pyrifera_M_contig70043.16760.1 vs. uniprot
Match: A0A8J2EF92_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2EF92_9DINO)

HSP 1 Score: 50.8 bits (120), Expect = 2.130e-5
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:  121 PNGATYQGWMWKGVRHGRGRLLYKDGSMYVGTWSNGVPHGLG 246
            P+G+ Y+GWM  G +HG GR L  DGS+Y G +  G+ +G G
Sbjct: 9779 PDGSRYEGWMMNGKKHGNGRYLLADGSIYDGQFREGIVNGYG 9820
[Close]
BLAST of mRNA_M-pyrifera_M_contig70043.16760.1 vs. uniprot
Match: A0A0R3TMV0_RODNA (MORN repeat-containing protein 5 n=1 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3TMV0_RODNA)

HSP 1 Score: 48.5 bits (114), Expect = 7.090e-5
Identity = 19/45 (42.22%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:  100 GLILVRAPNGATYQGWMWKGVRHGRGRLLYKDGSMYVGTWSNGVP 234
            G+   + P+G  Y+G M  G+ HG G++++ DG +Y GT+SNG P
Sbjct:    3 GMGRYKLPSGNMYEGEMKDGMYHGNGKIIFPDGGIYSGTFSNGYP 47
[Close]
BLAST of mRNA_M-pyrifera_M_contig70043.16760.1 vs. uniprot
Match: A0A835Y0E2_9CHLO (1-phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y0E2_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 7.250e-5
Identity = 24/52 (46.15%), Postives = 30/52 (57.69%), Query Frame = 1 
Query:   85 ADDYSGLILVRAPNGATYQG-WMWKGVRHGRGRLLYKDGSMYVGTWSNGVPH 237
            ADDY G+      NG TY G W   G+  G G+   KDGS+Y GTW +G+ H
Sbjct:    2 ADDYFGVRSKTFSNGDTYTGTWSPAGLPDGEGKYTRKDGSIYDGTWKDGMRH 53
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70043.16760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7L2RD66_9PASS7.000e-642.22MORN5 protein (Fragment) n=1 Tax=Neodrepanis corus... [more]
A0A8J2EF92_9DINO2.130e-547.62Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A0R3TMV0_RODNA7.090e-542.22MORN repeat-containing protein 5 n=1 Tax=Rodentole... [more]
A0A835Y0E2_9CHLO7.250e-546.151-phosphatidylinositol-4-phosphate 5-kinase n=1 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70043contigM-pyrifera_M_contig70043:731..976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue7.6e-12
Seed eggNOG ortholog2880.D7FQA7
Preferred nameFBXO39
KEGG rclassRC00002
KEGG koko:K00939,ko:K10314
KEGG ReactionR00127,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG ModuleM00049
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0030163,GO:0031146,GO:0031461,GO:0032991,GO:0043087,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0051603,GO:0065007,GO:0065009,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.regulation of ryanodine-sensitive calcium-release channel activity
EggNOG OGsCOG4642@1,KOG0231@2759,KOG1032@1,KOG1032@2759,KOG1947@1,KOG1947@2759
EC2.7.4.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121,ko04147
Exons1
Model size246
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816593.7546723-CDS-M-pyrifera_M_contig70043:730..9761622816593.7546723-CDS-M-pyrifera_M_contig70043:730..976Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70043 731..976 +
1692278066.6371133-CDS-M-pyrifera_M_contig70043:730..9761692278066.6371133-CDS-M-pyrifera_M_contig70043:730..976Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70043 731..976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70043.16760.1prot_M-pyrifera_M_contig70043.16760.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70043 731..976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70043.16760.1

>prot_M-pyrifera_M_contig70043.16760.1 ID=prot_M-pyrifera_M_contig70043.16760.1|Name=mRNA_M-pyrifera_M_contig70043.16760.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MRRKDHWGVFLTADGWHFEGAGVDNHFAADDYSGLILVRAPNGATYQGWM
WKGVRHGRGRLLYKDGSMYVGTWSNGVPHGLG
back to top

mRNA from alignment at M-pyrifera_M_contig70043:731..976+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70043.16760.1 ID=mRNA_M-pyrifera_M_contig70043.16760.1|Name=mRNA_M-pyrifera_M_contig70043.16760.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig70043:731..976+ (Macrocystis pyrifera P11B4 male)
ATGAGGAGGAAAGATCATTGGGGCGTGTTTTTAACTGCTGATGGTTGGCA
CTTTGAGGGTGCTGGGGTTGACAACCACTTTGCTGCTGACGATTACTCGG
GATTGATTCTTGTACGTGCACCCAATGGTGCAACATATCAAGGTTGGATG
TGGAAAGGTGTGAGGCATGGGCGTGGGAGGTTATTGTACAAAGACGGCTC
TATGTATGTTGGAACATGGTCAAATGGTGTTCCGCATGGACTTGGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig70043:731..976+

>mRNA_M-pyrifera_M_contig70043.16760.1 ID=mRNA_M-pyrifera_M_contig70043.16760.1|Name=mRNA_M-pyrifera_M_contig70043.16760.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig70043:731..976+ (Macrocystis pyrifera P11B4 male)
ATGAGGAGGAAAGATCATTGGGGCGTGTTTTTAACTGCTGATGGTTGGCA
CTTTGAGGGTGCTGGGGTTGACAACCACTTTGCTGCTGACGATTACTCGG
GATTGATTCTTGTACGTGCACCCAATGGTGCAACATATCAAGGTTGGATG
TGGAAAGGTGTGAGGCATGGGCGTGGGAGGTTATTGTACAAAGACGGCTC
TATGTATGTTGGAACATGGTCAAATGGTGTTCCGCATGGACTTGGGATGA
GGAGGAAAGATCATTGGGGCGTGTTTTTAACTGCTGATGGTTGGCACTTT
GAGGGTGCTGGGGTTGACAACCACTTTGCTGCTGACGATTACTCGGGATT
GATTCTTGTACGTGCACCCAATGGTGCAACATATCAAGGTTGGATGTGGA
AAGGTGTGAGGCATGGGCGTGGGAGGTTATTGTACAAAGACGGCTCTATG
TATGTTGGAACATGGTCAAATGGTGTTCCGCATGGACTTGGG
back to top