mRNA_M-pyrifera_M_contig70039.16759.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70039.16759.1
Unique NamemRNA_M-pyrifera_M_contig70039.16759.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70039.16759.1 vs. uniprot
Match: A0A6H5KRE0_9PHAE (Quinolinate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRE0_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.380e-18
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    4 VYRLSEAEIGCSLAEAAEKKFYEAWLREAAAQPNSMHVVYINTSLVTKAMS 156
            VYRLSE+EIGCSLAEAAE+K YEAWLR+A+A  NSMHVVYINTSLVTKA+S
Sbjct:  206 VYRLSESEIGCSLAEAAERKAYEAWLRKASATANSMHVVYINTSLVTKALS 256
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BLAST of mRNA_M-pyrifera_M_contig70039.16759.1 vs. uniprot
Match: D7FHH3_ECTSI (Quinolinate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH3_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 5.660e-18
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    4 VYRLSEAEIGCSLAEAAEKKFYEAWLREAAAQPNSMHVVYINTSLVTKAMS 156
            VYRLSE+EIGCSLAEAAE+K YEAWLR+A+A  NSMHVVYINTSLVTKA+S
Sbjct:  196 VYRLSESEIGCSLAEAAERKAYEAWLRKASATANSMHVVYINTSLVTKALS 246
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BLAST of mRNA_M-pyrifera_M_contig70039.16759.1 vs. uniprot
Match: A0A836CLI9_9STRA (Quinolinate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLI9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.080e-16
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    4 VYRLSEAEIGCSLAEAAEKKFYEAWLREAAAQPNSMHVVYINTSLVTKAMS 156
            VYRLSE EIGCSLA AAEK  YEAWLR+AA  PNS+HVVYINTSL+TKA S
Sbjct:  174 VYRLSEKEIGCSLAGAAEKLEYEAWLRKAAKTPNSLHVVYINTSLITKAKS 224
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BLAST of mRNA_M-pyrifera_M_contig70039.16759.1 vs. uniprot
Match: A0A0D2MKQ9_9CHLO (Quinolinate synthase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MKQ9_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 3.140e-13
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 QVYRLSEAEIGCSLAEAAEKKFYEAWLREAAAQPNSMHVVYINTSLVTKAMSQVL 165
            QVYR+S + IGCSLAEAAE   Y+ +L EAAA PNS+HVVYINTSL+TKA +  L
Sbjct:  216 QVYRMSSSPIGCSLAEAAESAAYDRFLSEAAATPNSLHVVYINTSLLTKATADAL 270
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BLAST of mRNA_M-pyrifera_M_contig70039.16759.1 vs. uniprot
Match: D5LAT9_CHLRE (Quinolinate synthase n=5 Tax=Chlamydomonas TaxID=3052 RepID=D5LAT9_CHLRE)

HSP 1 Score: 69.3 bits (168), Expect = 2.050e-12
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 QVYRLSEAEIGCSLAEAAEKKFYEAWLREAAAQPNSMHVVYINTSLVTKAMSQVL 165
            QVYRL+E++IGCSLAEAAE   Y  +L++AA  PNS+HVVYINTSL TKA +  L
Sbjct:  255 QVYRLAESDIGCSLAEAAESDSYSRYLQQAAHTPNSVHVVYINTSLRTKARAHAL 309
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BLAST of mRNA_M-pyrifera_M_contig70039.16759.1 vs. uniprot
Match: A0A2V0NM57_9CHLO (Quinolinate synthase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NM57_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 2.050e-12
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 QVYRLSEAEIGCSLAEAAEKKFYEAWLREAAAQPNSMHVVYINTSLVTKAMSQVL 165
            QVYR+S + IGCSLAEAAE   Y A+L EA A P S+HVVYINTSL+TKA +  L
Sbjct:  326 QVYRMSSSPIGCSLAEAAESDAYNAYLAEAGATPTSLHVVYINTSLLTKATANAL 380
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BLAST of mRNA_M-pyrifera_M_contig70039.16759.1 vs. uniprot
Match: A0A8J4G5W1_9CHLO (Quinolinate synthase n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G5W1_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 2.050e-12
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 QVYRLSEAEIGCSLAEAAEKKFYEAWLREAAAQPNSMHVVYINTSLVTKAMSQVL 165
            QVYRL+EA+IGCSLAEAAE   Y ++L  AA  PNS+HVVYINTSL TKA+   L
Sbjct:  342 QVYRLAEADIGCSLAEAAEADTYMSYLSTAAQTPNSVHVVYINTSLRTKALGHAL 396
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BLAST of mRNA_M-pyrifera_M_contig70039.16759.1 vs. uniprot
Match: A8HYN1_CHLRE (Quinolinate synthase (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HYN1_CHLRE)

HSP 1 Score: 67.8 bits (164), Expect = 2.200e-12
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 QVYRLSEAEIGCSLAEAAEKKFYEAWLREAAAQPNSMHVVYINTSLVTKAMSQVL 165
            +VYRL+E++IGCSLAEAAE   Y  +L++AA  PNS+HVVYINTSL TKA +  L
Sbjct:  100 RVYRLAESDIGCSLAEAAESDSYSRYLQQAAHTPNSVHVVYINTSLRTKARAHAL 154
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BLAST of mRNA_M-pyrifera_M_contig70039.16759.1 vs. uniprot
Match: A0A2D4C0A3_PYTIN (Quinolinate synthase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0A3_PYTIN)

HSP 1 Score: 68.9 bits (167), Expect = 2.790e-12
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    4 VYRLSEAEIGCSLAEAAEKKFYEAWLREAAAQPNSMHVVYINTSLVTKAMS 156
            VYRLSE++IGCSLAE+AEK+ Y A+L++AA  PNS+HVVYINTSL +KA +
Sbjct:  155 VYRLSESKIGCSLAESAEKQAYIAYLQKAAKTPNSLHVVYINTSLRSKAFA 205
[Close]
BLAST of mRNA_M-pyrifera_M_contig70039.16759.1 vs. uniprot
Match: A0A2D9TBK0_9DELT (Quinolinate synthase n=1 Tax=Sandaracinus sp. TaxID=2024858 RepID=A0A2D9TBK0_9DELT)

HSP 1 Score: 68.6 bits (166), Expect = 3.800e-12
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    4 VYRLSEAEIGCSLAEAAEKKFYEAWLREAAAQPNSMHVVYINTSLVTKAMSQVL 165
            VYR+++ EIGCSLAE+AEK+ Y A+L +A+  P SMHVVYINTSLVTKA +  L
Sbjct:  124 VYRVAQEEIGCSLAESAEKQAYGAYLMQASETPRSMHVVYINTSLVTKAKAHAL 177
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70039.16759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRE0_9PHAE1.380e-1884.31Quinolinate synthase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7FHH3_ECTSI5.660e-1884.31Quinolinate synthase n=1 Tax=Ectocarpus siliculosu... [more]
A0A836CLI9_9STRA6.080e-1680.39Quinolinate synthase n=1 Tax=Tribonema minus TaxID... [more]
A0A0D2MKQ9_9CHLO3.140e-1367.27Quinolinate synthase n=1 Tax=Monoraphidium neglect... [more]
D5LAT9_CHLRE2.050e-1265.45Quinolinate synthase n=5 Tax=Chlamydomonas TaxID=3... [more]
A0A2V0NM57_9CHLO2.050e-1265.45Quinolinate synthase n=1 Tax=Raphidocelis subcapit... [more]
A0A8J4G5W1_9CHLO2.050e-1267.27Quinolinate synthase n=2 Tax=Volvox reticuliferus ... [more]
A8HYN1_CHLRE2.200e-1263.64Quinolinate synthase (Fragment) n=1 Tax=Chlamydomo... [more]
A0A2D4C0A3_PYTIN2.790e-1268.63Quinolinate synthase n=2 Tax=Pythium insidiosum Ta... [more]
A0A2D9TBK0_9DELT3.800e-1264.81Quinolinate synthase n=1 Tax=Sandaracinus sp. TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70039contigM-pyrifera_M_contig70039:397..561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog2880.D7FHH3
Preferred nameQS
KEGG rclassRC01119
KEGG koko:K03517
KEGG ReactionR04292
KEGG Pathwayko00760,ko01100,map00760,map01100
KEGG ModuleM00115
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006091,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008987,GO:0009058,GO:0009060,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009507,GO:0009536,GO:0009893,GO:0009987,GO:0015980,GO:0016043,GO:0016053,GO:0016226,GO:0017144,GO:0018130,GO:0019222,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0022607,GO:0030234,GO:0031163,GO:0031323,GO:0031325,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0042762,GO:0042802,GO:0042803,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046394,GO:0046483,GO:0046496,GO:0046874,GO:0046983,GO:0048037,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051176,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0055114,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0090407,GO:0098772,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605
EggNOG free text desc.quinolinate synthetase A activity
EggNOG OGs2QPQ6@2759,COG0379@1
EC2.5.1.72
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816593.7142167-CDS-M-pyrifera_M_contig70039:396..5611622816593.7142167-CDS-M-pyrifera_M_contig70039:396..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70039 397..561 -
1692278066.6212142-CDS-M-pyrifera_M_contig70039:396..5611692278066.6212142-CDS-M-pyrifera_M_contig70039:396..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70039 397..561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70039.16759.1prot_M-pyrifera_M_contig70039.16759.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70039 397..561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70039.16759.1

>prot_M-pyrifera_M_contig70039.16759.1 ID=prot_M-pyrifera_M_contig70039.16759.1|Name=mRNA_M-pyrifera_M_contig70039.16759.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
QVYRLSEAEIGCSLAEAAEKKFYEAWLREAAAQPNSMHVVYINTSLVTKA
MSQVL
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mRNA from alignment at M-pyrifera_M_contig70039:397..561-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70039.16759.1 ID=mRNA_M-pyrifera_M_contig70039.16759.1|Name=mRNA_M-pyrifera_M_contig70039.16759.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig70039:397..561- (Macrocystis pyrifera P11B4 male)
CAGGTGTACCGTCTTTCAGAAGCGGAGATAGGCTGCAGCCTGGCAGAGGC
GGCGGAGAAAAAATTCTACGAGGCCTGGCTTAGAGAGGCCGCGGCCCAGC
CCAACTCGATGCACGTGGTCTACATCAACACGTCCCTCGTGACCAAGGCT
ATGTCTCAGGTGCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70039:397..561-

>mRNA_M-pyrifera_M_contig70039.16759.1 ID=mRNA_M-pyrifera_M_contig70039.16759.1|Name=mRNA_M-pyrifera_M_contig70039.16759.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig70039:397..561- (Macrocystis pyrifera P11B4 male)
CAGGTGTACCGTCTTTCAGAAGCGGAGATAGGCTGCAGCCTGGCAGAGGC
GGCGGAGAAAAAATTCTACGAGGCCTGGCTTAGAGAGGCCGCGGCCCAGC
CCAACTCGATGCACGTGGTCTACATCAACACGTCCCTCGTGACCAAGGCT
ATGTCTCAGGTGCTTCAGGTGTACCGTCTTTCAGAAGCGGAGATAGGCTG
CAGCCTGGCAGAGGCGGCGGAGAAAAAATTCTACGAGGCCTGGCTTAGAG
AGGCCGCGGCCCAGCCCAACTCGATGCACGTGGTCTACATCAACACGTCC
CTCGTGACCAAGGCTATGTCTCAGGTGCTT
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