mRNA_M-pyrifera_M_contig70014.16757.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70014.16757.1
Unique NamemRNA_M-pyrifera_M_contig70014.16757.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig70014.16757.1 vs. uniprot
Match: C1EDY5_MICCC (Gamma-tubulin complex component (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EDY5_MICCC)

HSP 1 Score: 89.0 bits (219), Expect = 1.420e-16
Identity = 89/271 (32.84%), Postives = 119/271 (43.91%), Query Frame = 1 
Query:    1 EQRLVEDVLVVAQGFGGRYVDFSGPGGGVRVRPGAPGSAVQLGLCLRVGEVGWVARRVRSWVEKEKAAGL------CKSALVAAAEEELGALAR--------------------TCGALGARSKGD--LSLRALSAWLCGASLSRTRALAQAVESVGHLHGGALSGALWTRGTATGDTAARALLLKLARRTAAPLFAMARRWVLAGEIVDDFGEFWV-HESEEGTEGGGREKGVVGSAVCPAFLGGGVAAAIAGAGAAVRALRVQCHDEAW 726
            EQ LV DVL   QG  GR++ ++       V P AP       L  ++ E+GW+ RRVR+ +     AGL       + A  AA + EL    R                    T G  G  + G   L+LR LS WL    L R R LA  V++     GGAL  AL       GD A RA + +L    A P   M R WV+AGE+ D  GEF+V  +   G E   R +  +   + P F+    AA +   G ++  LR +C DE W
Sbjct:  156 EQELVRDVLFACQGIDGRHIRYNPQMASYVVDPAAPVRPGARDLARKLTELGWLFRRVRAALGGVDEAGLGGDGGSVRQAFRAAVQAELADYYRLIAVLEAQAQVPMASALEAPTTGTGGGTAGGGTYLTLRRLSVWLAE-PLRRLRLLAVLVDAAADARGGALLRALHEHAK-HGDPATRATVERLLAAAAEPALRMVRAWVVAGELEDPRGEFFVASDPAVGEEDLWRSRYFINDEMRPPFISEATAADVLRVGKSINFLRRRCDDENW 424
[Close]
BLAST of mRNA_M-pyrifera_M_contig70014.16757.1 vs. uniprot
Match: A0A1Y2HE04_9FUNG (Spindle pole body component n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HE04_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 1.690e-6
Identity = 66/256 (25.78%), Postives = 111/256 (43.36%), Query Frame = 1 
Query:   10 LVEDVLVVAQGFGGRYVDFSGPGGGVRVRPGAPGSAVQLGLCLRVGEVGWVARRVRSWVEKEKAA---------------GLCKSALVAAAEEELGALARTCGAL-GARSKGDLSLRALSAWLCGASLSRTRALAQAVESVGHLHGGALSGALWTRGTATGDTAARALLLKLARRTAAPLFAMARRWVLAGEIVDDFGEFWVHESEEGTEGGG-REKGVVGSAVCPAFLGGGVAAAIAGAGAAVRALRVQCHDEAW 726
            +++D+L V QG  GR + +        + P          L  R+GE+G++ + +  ++   + A               GL + +  +A   E+    R    L  + ++GDL+LR L  W    +  R R +   + S   + GGA+   + T     GD    A +  + +   APLFAM RRWV  G++VD  GEF+V  +    E    + K  +   + P F+   +A  I   G ++  LR +  D AW
Sbjct:  248 IIKDLLFVLQGIDGRLMKWDPNLSEFVLDPNVGIPRPTRDLIRRIGELGYLYKSIADYLTTTRLATGGTSQPTAPGGSTIGLVEQSFASALSTEIAHYFRLLAVLESSTARGDLTLRRLWLWTSEPA-QRLRVIYAMINSSRGVQGGAMLSMVHTYAH-HGDPGLEAFVQHVLKAMCAPLFAMIRRWVYEGDLVDPHGEFFVKVAGNVDEDEWWKAKYTLQQDMIPGFIDKLLARKILLIGKSLNFLRFRAKDHAW 501
[Close]
BLAST of mRNA_M-pyrifera_M_contig70014.16757.1 vs. uniprot
Match: A0A7R9JTI5_TIMGE (Gamma-tubulin complex component n=2 Tax=Timema TaxID=61471 RepID=A0A7R9JTI5_TIMGE)

HSP 1 Score: 57.0 bits (136), Expect = 9.370e-6
Identity = 67/263 (25.48%), Postives = 114/263 (43.35%), Query Frame = 1 
Query:    1 EQRLVEDVLVVAQGFGGRYVDFSGPGGGVRVRPGAPGSAVQLGLCLRVGEVGWVARRVRSWVEKE---KAAGLCKSALVAAAEEELGALARTCGAL-----------------GARSKGDLSLRALSAWLCGASLSRTRALAQAVESVGHLHGGALSGALWTRGTATGDTAARALLLKLARRTAAPLFAMARRWVLAGEIVDDFGEFWVHESEEGTEGG--GREKGVVGSAVCPAFLGGGVAAAIAGAGAAVRALRVQCHDEA 723
            E  L+++++   QG  G+ +  +    G ++ P            +R+ E+GW+  +V+   +     ++ GL   +LV A   EL   +R    L                  +R    L+LR L  W     ++R + L   +E+     GGAL+  + +     GD   +  + +L      PL AM  RW+LAGE+ D +GEF++  + E  +G     EK  V  A+ P+F+    A  I   G ++  LR  C D+A
Sbjct:   23 ESTLLQELIYCFQGINGKILKMNYASQGFQIDPKVQLKRPVHCQVMRLAELGWLCAQVQQHCQPAGVIRSTGLIGQSLVVALRGELTEYSRLVATLQSQVPVPVQPHNELEPLASRRSTGLTLRQLVVWSLD-PMARLKCLVAVMEACRDKKGGALASCIHSF-LQHGDPFVKDTVKQLLAAVCKPLHAMLSRWILAGELDDAYGEFFIAANLE-IKGNLLWHEKYRVLDAMVPSFISMAQAKKILATGKSINFLREVCLDQA 282
[Close]
BLAST of mRNA_M-pyrifera_M_contig70014.16757.1 vs. uniprot
Match: A0A1X2HSV2_SYNRA (Spindle pole body component n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HSV2_SYNRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.900e-5
Identity = 63/255 (24.71%), Postives = 111/255 (43.53%), Query Frame = 1 
Query:    1 EQRLVEDVLVVAQGFGGRYVDFSGPGGGVRVRPGAPGSAVQ--LGLCLRVGEVGWVARRVRSWVE---KEKAAGLCKSALVAAAEEELGALARTCGAL---------GARSKGDLSLRALSAWLCGASLSRTRALAQAVESVGHLHGGALSGALWTRGTATGDTAARALLLKLARRTAAPLFAMARRWVLAGEIVDDFGEFWVH-ESEEGTEGGGREKGVVGSAVCPAFLGGGVAAAIAGAGAAVRALRVQCHDE 720
            E  L+ D++ V QG  G+++     G    V   + G   Q      LR+ E+GW+ RRV+++V     + + GL   A   A + EL    +    L          + ++  L+L+ L  W    S  R R ++  V++     GG L   +    T  GD   +  +  +    + P + M +RWV  GE+ D +GEF+V  +     E   + K  +   + P+++   +A  I   G ++  +R  CHD+
Sbjct:   54 ESALLRDLIFVFQGIDGQHIKLD-CGTNEYVLDASRGHVSQPTKDFVLRLAELGWLYRRVQTFVHARYNDPSVGLVGQAFCFALQRELTDYYKFIAILEGQIEKQTTASTTEQTLTLKRLLVWTRD-SFQRLRLMSVLVDACQDQKGGTLVSTMHNY-TKHGDPFIQQFIKDMLEEVSKPFYEMLQRWVYEGELDDPYGEFFVACDPMVSEEELWQSKYSIRKDMIPSYISNELAQKIFSIGKSLNFIRYSCHDD 305
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70014.16757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
C1EDY5_MICCC1.420e-1632.84Gamma-tubulin complex component (Fragment) n=1 Tax... [more]
A0A1Y2HE04_9FUNG1.690e-625.78Spindle pole body component n=1 Tax=Catenaria angu... [more]
A0A7R9JTI5_TIMGE9.370e-625.48Gamma-tubulin complex component n=2 Tax=Timema Tax... [more]
A0A1X2HSV2_SYNRA9.900e-524.71Spindle pole body component n=1 Tax=Syncephalastru... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70014contigM-pyrifera_M_contig70014:50..904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score105.1
Seed ortholog evalue4.5e-20
Seed eggNOG ortholog3218.PP1S44_159V6.1
KEGG koko:K16570
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000923,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005881,GO:0005886,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0008092,GO:0008150,GO:0008275,GO:0009605,GO:0009607,GO:0009624,GO:0009898,GO:0009987,GO:0010638,GO:0010968,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030863,GO:0030981,GO:0031109,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031334,GO:0031967,GO:0031975,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032886,GO:0032991,GO:0033043,GO:0034622,GO:0043015,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044459,GO:0044464,GO:0046785,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051225,GO:0051258,GO:0051321,GO:0051415,GO:0051418,GO:0051493,GO:0051495,GO:0051704,GO:0051707,GO:0055028,GO:0065003,GO:0065007,GO:0070507,GO:0070925,GO:0071840,GO:0071944,GO:0090063,GO:0090307,GO:0097435,GO:0098552,GO:0098562,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0140014,GO:1902850,GO:1902903,GO:1902905,GO:1903047
EggNOG free text desc.Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome
EggNOG OGs37Q6F@33090,3G87I@35493,KOG2000@1,KOG2000@2759
COG Functional cat.Z
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Exons2
Model size726
Cds size726
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816593.6304069-CDS-M-pyrifera_M_contig70014:49..1451622816593.6304069-CDS-M-pyrifera_M_contig70014:49..145Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70014 50..145 -
1692278066.5760155-CDS-M-pyrifera_M_contig70014:49..1451692278066.5760155-CDS-M-pyrifera_M_contig70014:49..145Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70014 50..145 -
1622816593.6405313-CDS-M-pyrifera_M_contig70014:274..9041622816593.6405313-CDS-M-pyrifera_M_contig70014:274..904Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70014 275..904 -
1692278066.597423-CDS-M-pyrifera_M_contig70014:274..9041692278066.597423-CDS-M-pyrifera_M_contig70014:274..904Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70014 275..904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70014.16757.1prot_M-pyrifera_M_contig70014.16757.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70014 50..904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70014.16757.1

>prot_M-pyrifera_M_contig70014.16757.1 ID=prot_M-pyrifera_M_contig70014.16757.1|Name=mRNA_M-pyrifera_M_contig70014.16757.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=242bp
EQRLVEDVLVVAQGFGGRYVDFSGPGGGVRVRPGAPGSAVQLGLCLRVGE
VGWVARRVRSWVEKEKAAGLCKSALVAAAEEELGALARTCGALGARSKGD
LSLRALSAWLCGASLSRTRALAQAVESVGHLHGGALSGALWTRGTATGDT
AARALLLKLARRTAAPLFAMARRWVLAGEIVDDFGEFWVHESEEGTEGGG
REKGVVGSAVCPAFLGGGVAAAIAGAGAAVRALRVQCHDEAW
back to top

mRNA from alignment at M-pyrifera_M_contig70014:50..904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70014.16757.1 ID=mRNA_M-pyrifera_M_contig70014.16757.1|Name=mRNA_M-pyrifera_M_contig70014.16757.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=855bp|location=Sequence derived from alignment at M-pyrifera_M_contig70014:50..904- (Macrocystis pyrifera P11B4 male)
GAGCAGCGTCTGGTGGAGGACGTGTTGGTGGTGGCACAGGGGTTTGGGGG
CCGTTATGTGGATTTTTCGGGTCCTGGCGGCGGCGTTCGCGTGCGTCCGG
GGGCCCCGGGGTCTGCGGTGCAGCTGGGTCTGTGCTTGCGGGTGGGAGAG
GTGGGCTGGGTGGCGCGGAGGGTGCGATCGTGGGTGGAAAAGGAGAAAGC
GGCGGGATTGTGCAAGAGTGCGCTCGTGGCAGCGGCAGAGGAGGAGCTAG
GGGCGTTGGCACGCACGTGTGGGGCGTTGGGCGCACGGTCCAAGGGCGAT
TTGAGTCTTCGTGCCCTCAGCGCCTGGCTGTGTGGTGCCTCCCTCTCACG
CACGCGTGCGCTCGCACAAGCGGTGGAGAGTGTTGGTCATCTCCATGGTG
GAGCTCTCAGCGGGGCTCTGTGGACCAGAGGCACCGCCACGGGTGACACA
GCAGCGCGAGCTCTCCTCCTCAAACTAGCCAGAAGGACGGCAGCGCCTCT
CTTCGCCATGGCCAGACGATGGGTGCTCGCAGGAGAAATAGTGGACGATT
TTGGAGAATTCTGGGTCCACGAATCGGAAGAAGGAACAGAAGGAGGAGGG
AGGGAGAAAGGGGTGGTAGGAAGTGCAGTTGTGACGAGATTTTCGTCCTC
TTCCTCTTCCTCCTCTTCATCCCCACCACCAGTACCATCATCCTCATCAT
CATTCCCACCCTATTCCTCCCCCTCCTCTTCTTCCTCCTTCTCTCCTGCC
TGGTCCCAGTGTCCTGCGTTCCTTGGGGGTGGAGTGGCGGCTGCGATCGC
AGGGGCAGGGGCTGCGGTGCGTGCCCTCCGTGTGCAGTGCCACGACGAGG
CGTGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig70014:50..904-

>mRNA_M-pyrifera_M_contig70014.16757.1 ID=mRNA_M-pyrifera_M_contig70014.16757.1|Name=mRNA_M-pyrifera_M_contig70014.16757.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1452bp|location=Sequence derived from alignment at M-pyrifera_M_contig70014:50..904- (Macrocystis pyrifera P11B4 male)
GAGCAGCGTCTGGTGGAGGACGTGTTGGTGGTGGCACAGGGGTTTGGGGG
CCGTTATGTGGATTTTTCGGGTCCTGGCGGCGGCGTTCGCGTGCGTCCGG
GGGCCCCGGGGTCTGCGGTGCAGCTGGGTCTGTGCTTGCGGGTGGGAGAG
GTGGGCTGGGTGGCGCGGAGGGTGCGATCGTGGGTGGAAAAGGAGAAAGC
GGCGGGATTGTGCAAGAGTGCGCTCGTGGCAGCGGCAGAGGAGGAGCTAG
GGGCGTTGGCACGCACGTGTGGGGCGTTGGGCGCACGGTCCAAGGGCGAT
TTGAGTCTTCGTGCCCTCAGCGCCTGGCTGTGTGGTGCCTCCCTCTCACG
CACGCGTGCGCTCGCACAAGCGGTGGAGAGTGTTGGTCATCTCCATGGTG
GAGCTCTCAGCGGGGCTCTGTGGACCAGAGGCACCGCCACGGGTGACACA
GCAGCGCGAGCTCTCCTCCTCAAACTAGCCAGAAGGACGGCAGCGCCTCT
CTTCGCCATGGCCAGACGATGGGTGCTCGCAGGAGAAATAGTGGACGATT
TTGGAGAATTCTGGGTCCACGAATCGGAAGAAGGAACAGAAGGAGGAGGG
AGGGAGAAAGGGGTGGTAGGAAGTGCAGTTGAGCAGCGTCTGGTGGAGGA
CGTGTTGGTGGTGGCACAGGGGTTTGGGGGCCGTTATGTGGATTTTTCGG
GTCCTGGCGGCGGCGTTCGCGTGCGTCCGGGGGCCCCGGGGTCTGCGGTG
CAGCTGGGTCTGTGCTTGCGGGTGGGAGAGGTGGGCTGGGTGGCGCGGAG
GGTGCGATCGTGGGTGGAAAAGGAGAAAGCGGCGGGATTGTGCAAGAGTG
CGCTCGTGGCAGCGGCAGAGGAGGAGCTAGGGGCGTTGGCACGCACGTGT
GGGGCGTTGGGCGCACGGTCCAAGGGCGATTTGAGTCTTCGTGCCCTCAG
CGCCTGGCTGTGTGGTGCCTCCCTCTCACGCACGCGTGCGCTCGCACAAG
CGGTGGAGAGTGTTGGTCATCTCCATGGTGGAGCTCTCAGCGGGGCTCTG
TGGACCAGAGGCACCGCCACGGGTGACACAGCAGCGCGAGCTCTCCTCCT
CAAACTAGCCAGAAGGACGGCAGCGCCTCTCTTCGCCATGGCCAGACGAT
GGGTGCTCGCAGGAGAAATAGTGGACGATTTTGGAGAATTCTGGGTCCAC
GAATCGGAAGAAGGAACAGAAGGAGGAGGGAGGGAGAAAGGGGTGGTAGG
AAGTGCAGTTTGTCCTGCGTTCCTTGGGGGTGGAGTGGCGGCTGCGATCG
CAGGGGCAGGGGCTGCGGTGCGTGCCCTCCGTGTGCAGTGCCACGACGAG
GCGTGGTGTCCTGCGTTCCTTGGGGGTGGAGTGGCGGCTGCGATCGCAGG
GGCAGGGGCTGCGGTGCGTGCCCTCCGTGTGCAGTGCCACGACGAGGCGT
GG
back to top