mRNA_M-pyrifera_M_contig70012.16756.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70012.16756.1
Unique NamemRNA_M-pyrifera_M_contig70012.16756.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70012.16756.1 vs. uniprot
Match: A9UXZ0_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UXZ0_MONBE)

HSP 1 Score: 147 bits (372), Expect = 3.540e-39
Identity = 64/123 (52.03%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 LGLPAYDYGLNALHGTQTLALTWPNGTSFAPTSFPMPVSLGMSWNSSVYRFVGSVIGVETRAMYLWGSEEFSAWSGQAHIGLDQWSPVLNLAHDPRWGRTQEVPSEDPLSLAAYTSAFSMGSQ 369
            +GLP YD+G+NA+HG Q+  +   +GT + PTSFP PV+ G +WN S Y  +G +IGVETRA++L G+ E S WSG+ HIGLD WSP +N+A  P WGR QEVP EDP     +  A+++G Q
Sbjct:   75 IGLPEYDWGMNAIHGVQSSCIKDDDGTVYCPTSFPNPVNYGFTWNYSAYLELGRIIGVETRALWLAGAVEASTWSGRPHIGLDTWSPNINIARSPLWGRNQEVPGEDPFMNGQFGKAYTLGLQ 197          
BLAST of mRNA_M-pyrifera_M_contig70012.16756.1 vs. uniprot
Match: A0A0S4INM3_BODSA (Glycoside hydrolase family 3, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4INM3_BODSA)

HSP 1 Score: 132 bits (333), Expect = 1.690e-33
Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 LGLPAYDYGLNALHGTQTLALTWPNGTSFAPTSFPMPVSLGMSWNSSVYRFVGSVIGVETRAMYLWGSEEFSAWSGQAHIGLDQWSPVLNLAHDPRWGRTQEVPSEDPLSLAAYTSAFSMGSQ 369
            LG+P YD+GLN +HG Q+  +   N T   PTSFP P  LG +WN S  +++G  IG+E RA++  G+ E S WSG AHIGL+ WSP +N+  DPRWGR QEVPSEDPL    Y  A++ G Q
Sbjct:   87 LGVPGYDWGLNCVHGVQSTCV---NDT--CPTSFPNPNGLGATWNMSNVQWMGMKIGLEARALWRAGAREPSLWSGMAHIGLNCWSPNININRDPRWGRNQEVPSEDPLLAGDYAKAYTEGIQ 204          
BLAST of mRNA_M-pyrifera_M_contig70012.16756.1 vs. uniprot
Match: A0A7S4SLK6_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SLK6_9DINO)

HSP 1 Score: 118 bits (295), Expect = 2.340e-28
Identity = 60/125 (48.00%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    1 LGLPAYDYGLNALHGTQTLALTWPNGTSFAPTSFPMPVSLGMSWNSSVYRFVGSVIGVETRAMYLWGSEEFSAWSGQAHIGLDQWSPVLNLAHDPRWGRTQEVPSEDPLSLAAYTSAFSMGSQWG 375
            LG+P YD+G N +HG Q+   T     +  PTSFP P  LG S+N +V+R +G VIGVE R+++  G  E    SG    GLD WSP +N+  DPRWGR  E PSEDP  L A+  A + G QWG
Sbjct:   79 LGVPQYDWGGNCVHGVQSRCGTGTQNDTRCPTSFPNPNHLGASFNETVWRTMGRVIGVELRSLWRQGIGENHP-SGLPPFGLDCWSPNINVVRDPRWGRNMETPSEDPYLLGAFGVAVTEGLQWG 202          
BLAST of mRNA_M-pyrifera_M_contig70012.16756.1 vs. uniprot
Match: A0A7R9TXZ1_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TXZ1_9VIRI)

HSP 1 Score: 110 bits (274), Expect = 7.840e-28
Identity = 59/125 (47.20%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    1 LGLPAYDYGLNALHGTQTLALTWPNGTSFAPTSFPMPVSLGMSWNSSVYRFVGSVIGVETRAMYLWGSEEFSAWSGQAHIGLDQWSPVLNLAHDPRWGRTQEVPSEDPLSLAAYTSAFSMGSQWG 375
            LG+P YD+G N +HG Q+     P+G    PTSFP P +LG S++  ++  +  VIG E RA++  G  E  A SG   IGLD WSP +N+A DPRWGR  EVPSEDPL    + + +S G Q G
Sbjct:   32 LGVPQYDFGGNCIHGVQSRCA--PDGR--CPTSFPSPNALGASFDEGLWAAMAEVIGTELRALWRQGVGENRA-SGLPPIGLDCWSPNINIARDPRWGRVMEVPSEDPLVNGRFGAVYSRGLQEG 151          
BLAST of mRNA_M-pyrifera_M_contig70012.16756.1 vs. uniprot
Match: A0A0G4FH08_VITBC (Fn3_like domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FH08_VITBC)

HSP 1 Score: 111 bits (277), Expect = 6.230e-26
Identity = 54/123 (43.90%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 LGLPAYDYGLNALHGTQTLALTWPNGTSFAPTSFPMPVSLGMSWNSSVYRFVGSVIGVETRAMYLWGSEEFSAWSGQAHIGLDQWSPVLNLAHDPRWGRTQEVPSEDPLSLAAYTSAFSMGSQ 369
            +GLP YD+G N +HG Q+   +      + PTSFP P+ LG S++   +R +G++IG E RA+Y+ G  E +  S    IGLD WSPV+N+  DPRWGR  EVP EDP   + +  A++ G Q
Sbjct:   84 IGLPRYDWGANCVHGVQSRCTS----DGYCPTSFPNPIGLGASFDEPSWRKMGNIIGRELRALYMAGVGENNPQS-IPKIGLDCWSPVINIGRDPRWGRNSEVPGEDPYLTSRFGVAYTQGMQ 201          
BLAST of mRNA_M-pyrifera_M_contig70012.16756.1 vs. uniprot
Match: A0A813LHA7_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LHA7_POLGL)

HSP 1 Score: 109 bits (272), Expect = 2.960e-25
Identity = 56/125 (44.80%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    1 LGLPAYDYGLNALHGTQTLALTWPNGTSFAPTSFPMPVSLGMSWNSSVYRFVGSVIGVETRAMYLWGSEEFSAWSGQAHIGLDQWSPVLNLAHDPRWGRTQEVPSEDPLSLAAYTSAFSMGSQWG 375
            LG+P YD+G N +HG Q+   T  NG +  PTSFP P +LG ++N SV+  +G VIG E R+++  G  E    +    IGLD WSP +N+  DPRWGR  E  SEDP  L  +  A + G Q G
Sbjct:   81 LGVPQYDWGGNCVHGVQSRCGTGSNGETRCPTSFPNPNALGATFNESVWHGMGRVIGRELRSLWKQGVGEEHPPTELPPIGLDCWSPNINIVRDPRWGRNLETASEDPFLLGLFGVAVTQGLQVG 205          
BLAST of mRNA_M-pyrifera_M_contig70012.16756.1 vs. uniprot
Match: A0A813LQP5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LQP5_POLGL)

HSP 1 Score: 109 bits (272), Expect = 3.030e-25
Identity = 56/125 (44.80%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    1 LGLPAYDYGLNALHGTQTLALTWPNGTSFAPTSFPMPVSLGMSWNSSVYRFVGSVIGVETRAMYLWGSEEFSAWSGQAHIGLDQWSPVLNLAHDPRWGRTQEVPSEDPLSLAAYTSAFSMGSQWG 375
            LG+P YD+G N +HG Q+   T  NG +  PTSFP P +LG ++N SV+  +G VIG E R+++  G  E    +    IGLD WSP +N+  DPRWGR  E  SEDP  L  +  A + G Q G
Sbjct:   81 LGVPQYDWGGNCVHGVQSRCGTGSNGETRCPTSFPNPNALGATFNESVWHGMGRVIGRELRSLWKQGVGEEHPPTELPPIGLDCWSPNINIVRDPRWGRNLETASEDPFLLGLFGVAVTQGLQVG 205          
BLAST of mRNA_M-pyrifera_M_contig70012.16756.1 vs. uniprot
Match: A0A813FNJ4_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FNJ4_POLGL)

HSP 1 Score: 109 bits (272), Expect = 3.080e-25
Identity = 56/125 (44.80%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    1 LGLPAYDYGLNALHGTQTLALTWPNGTSFAPTSFPMPVSLGMSWNSSVYRFVGSVIGVETRAMYLWGSEEFSAWSGQAHIGLDQWSPVLNLAHDPRWGRTQEVPSEDPLSLAAYTSAFSMGSQWG 375
            LG+P YD+G N +HG Q+   T  NG +  PTSFP P +LG ++N SV+  +G VIG E R+++  G  E    +    IGLD WSP +N+  DPRWGR  E  SEDP  L  +  A + G Q G
Sbjct:   79 LGVPQYDWGGNCVHGVQSRCGTGSNGETRCPTSFPNPNALGATFNESVWHGMGRVIGRELRSLWKQGVGEEHPPTELPPIGLDCWSPNINIVRDPRWGRNLETASEDPFLLGLFGVAVTQGLQVG 203          
BLAST of mRNA_M-pyrifera_M_contig70012.16756.1 vs. uniprot
Match: A0A813GV54_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GV54_POLGL)

HSP 1 Score: 109 bits (272), Expect = 3.110e-25
Identity = 56/125 (44.80%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    1 LGLPAYDYGLNALHGTQTLALTWPNGTSFAPTSFPMPVSLGMSWNSSVYRFVGSVIGVETRAMYLWGSEEFSAWSGQAHIGLDQWSPVLNLAHDPRWGRTQEVPSEDPLSLAAYTSAFSMGSQWG 375
            LG+P YD+G N +HG Q+   T  NG +  PTSFP P +LG ++N SV+  +G VIG E R+++  G  E    +    IGLD WSP +N+  DPRWGR  E  SEDP  L  +  A + G Q G
Sbjct:   81 LGVPQYDWGGNCVHGVQSRCGTGSNGETRCPTSFPNPNALGATFNESVWHGMGRVIGRELRSLWKQGVGEEHPPTELPPIGLDCWSPNINIVRDPRWGRNLETASEDPFLLGLFGVAVTQGLQVG 205          
BLAST of mRNA_M-pyrifera_M_contig70012.16756.1 vs. uniprot
Match: A0A329S3M5_9STRA (Beta-xylosidase/alpha-L-arabinofuranosidase 2 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S3M5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.490e-25
Identity = 56/125 (44.80%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    1 LGLPAYDYGLNALHGTQTLALTWPNGTSFAPTSFPMPVSLGMSWNSSVYRFVGSVIGVETRAMYLWGSEEFSAWSGQAHIGLDQWSPVLNLAHDPRWGRTQEVPSEDPLSLAAYTSAFSMGSQWG 375
            +GLP Y++G N +HG Q+       GT+  PTSFP P++LG  ++  V   +  VIG E RA++L G+ E   + G  H+GLD WSP +N+  DPRWGR  E PSEDPL  + Y  A++ G Q G
Sbjct:   76 IGLPEYNWGANCVHGVQSTC-----GTN-CPTSFPNPINLGAIFDPQVVSDMAQVIGWELRALWLEGARE--NYKGGPHLGLDCWSPNININRDPRWGRNTETPSEDPLVNSKYGVAYTRGLQEG 192          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70012.16756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A9UXZ0_MONBE3.540e-3952.03Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A0S4INM3_BODSA1.690e-3352.03Glycoside hydrolase family 3, putative n=1 Tax=Bod... [more]
A0A7S4SLK6_9DINO2.340e-2848.00Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7R9TXZ1_9VIRI7.840e-2847.20Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A0G4FH08_VITBC6.230e-2643.90Fn3_like domain-containing protein n=1 Tax=Vitrell... [more]
A0A813LHA7_POLGL2.960e-2544.80Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A813LQP5_POLGL3.030e-2544.80Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813FNJ4_POLGL3.080e-2544.80Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A813GV54_POLGL3.110e-2544.80Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A329S3M5_9STRA5.490e-2544.80Beta-xylosidase/alpha-L-arabinofuranosidase 2 n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70012contigM-pyrifera_M_contig70012:801..1175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue3.2e-33
Seed eggNOG ortholog81824.XP_001745192.1
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.xylan 1,4-beta-xylosidase activity
EggNOG OGs2QQ55@2759,COG1472@1
EC3.2.1.37
COG Functional cat.G
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816593.6020079-CDS-M-pyrifera_M_contig70012:800..11751622816593.6020079-CDS-M-pyrifera_M_contig70012:800..1175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70012 801..1175 +
1692278066.5614514-CDS-M-pyrifera_M_contig70012:800..11751692278066.5614514-CDS-M-pyrifera_M_contig70012:800..1175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70012 801..1175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70012.16756.1prot_M-pyrifera_M_contig70012.16756.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70012 801..1175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70012.16756.1

>prot_M-pyrifera_M_contig70012.16756.1 ID=prot_M-pyrifera_M_contig70012.16756.1|Name=mRNA_M-pyrifera_M_contig70012.16756.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
LGLPAYDYGLNALHGTQTLALTWPNGTSFAPTSFPMPVSLGMSWNSSVYR
FVGSVIGVETRAMYLWGSEEFSAWSGQAHIGLDQWSPVLNLAHDPRWGRT
QEVPSEDPLSLAAYTSAFSMGSQWG
back to top

mRNA from alignment at M-pyrifera_M_contig70012:801..1175+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70012.16756.1 ID=mRNA_M-pyrifera_M_contig70012.16756.1|Name=mRNA_M-pyrifera_M_contig70012.16756.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig70012:801..1175+ (Macrocystis pyrifera P11B4 male)
TTGGGGCTGCCGGCGTACGACTACGGGCTGAACGCGCTGCACGGGACGCA GACTCTGGCGCTGACGTGGCCGAACGGGACGTCGTTCGCGCCCACCTCTT TTCCGATGCCGGTTTCGCTGGGGATGAGCTGGAACTCGAGCGTGTACCGG TTCGTGGGGTCCGTGATCGGTGTGGAGACGCGGGCCATGTACCTGTGGGG CTCCGAGGAGTTCAGCGCGTGGTCGGGCCAAGCACACATTGGGCTGGACC AGTGGTCGCCAGTGCTCAACTTGGCACACGACCCACGGTGGGGCAGGACC CAGGAGGTGCCTTCCGAGGACCCCCTCAGCCTCGCGGCCTACACGTCGGC CTTCTCCATGGGCTCCCAGTGGGGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig70012:801..1175+

>mRNA_M-pyrifera_M_contig70012.16756.1 ID=mRNA_M-pyrifera_M_contig70012.16756.1|Name=mRNA_M-pyrifera_M_contig70012.16756.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig70012:801..1175+ (Macrocystis pyrifera P11B4 male)
TTGGGGCTGCCGGCGTACGACTACGGGCTGAACGCGCTGCACGGGACGCA
GACTCTGGCGCTGACGTGGCCGAACGGGACGTCGTTCGCGCCCACCTCTT
TTCCGATGCCGGTTTCGCTGGGGATGAGCTGGAACTCGAGCGTGTACCGG
TTCGTGGGGTCCGTGATCGGTGTGGAGACGCGGGCCATGTACCTGTGGGG
CTCCGAGGAGTTCAGCGCGTGGTCGGGCCAAGCACACATTGGGCTGGACC
AGTGGTCGCCAGTGCTCAACTTGGCACACGACCCACGGTGGGGCAGGACC
CAGGAGGTGCCTTCCGAGGACCCCCTCAGCCTCGCGGCCTACACGTCGGC
CTTCTCCATGGGCTCCCAGTGGGGCTTGGGGCTGCCGGCGTACGACTACG
GGCTGAACGCGCTGCACGGGACGCAGACTCTGGCGCTGACGTGGCCGAAC
GGGACGTCGTTCGCGCCCACCTCTTTTCCGATGCCGGTTTCGCTGGGGAT
GAGCTGGAACTCGAGCGTGTACCGGTTCGTGGGGTCCGTGATCGGTGTGG
AGACGCGGGCCATGTACCTGTGGGGCTCCGAGGAGTTCAGCGCGTGGTCG
GGCCAAGCACACATTGGGCTGGACCAGTGGTCGCCAGTGCTCAACTTGGC
ACACGACCCACGGTGGGGCAGGACCCAGGAGGTGCCTTCCGAGGACCCCC
TCAGCCTCGCGGCCTACACGTCGGCCTTCTCCATGGGCTCCCAGTGGGGC
back to top