mRNA_M-pyrifera_M_contig68843.16549.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68843.16549.1
Unique NamemRNA_M-pyrifera_M_contig68843.16549.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68843.16549.1 vs. uniprot
Match: A0A7Y2DL51_9ACTN (Phenylalanine--tRNA ligase beta subunit n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DL51_9ACTN)

HSP 1 Score: 505 bits (1300), Expect = 3.360e-170
Identity = 266/414 (64.25%), Postives = 308/414 (74.40%), Query Frame = 1
Query:    1 GADLDGIVVAKVLELAPHPEADRIQVVQVDAGDGKPLQICCGAFNMAVGDLVPLATIGTTMPGGMEIAQRKLRGQTSNGMLCSSAELELAGDADGIMILDPTLGLGAPIADALGLDSDILFDIDVEGNRPDALSVLGVARDLAAKLGVEFTPPTPSVTESGVTASSLGSVEILDGDFCRRFGFRVLEGVTLGTSPDWMASRLTAAGMRPINTIVDISNYVMLELGQPNHTYDLDTVSEGGLRVRMASDGETIETLDGKTRTLTT----------ADGVITNKNDEAIGLAGVMGGASTEIGDSTTRVLLEAAIWDRMPIARTSRRLNLRSEASTRYERGVDFEGVERALDRFCELAIELCGATVASGAVVVDGTPLEPAVVRVRTERVNARLGSSLTTDEIAGLLTPIGFLNTP 1212
            G+  DGIVVA+V+ L PHPEAD+IQ+V V+AGDG P+Q+CCGAFNMAVGD VP ATIGT MP GMEIAQRKLRG+ SNGMLCS AELEL+ D DGIMILDP L LG P+A  LG+ ++ +FDIDVE NRP+ALSV+G+ARDLAAK GV F  P P+V  +G  A  + S+ I DGD C RF  RVL  VT   SP WM +RL AAGMRPI+TIVDISNYVMLE G PNHT+DLDTV +G L VR A +GET+ TLDG  R L             DGVI N++D+ I LAGVMGG  TEI D+TT VLLEAA+WDRM IA TSRRLNLRSEASTR+ERGVD  GVERALDRFCELA EL GA +A G VV +  P+E  VV  R  RVN  LG+ L  D++  LL+PIGF  +P
Sbjct:   39 GSSWDGIVVARVVALRPHPEADKIQLVDVEAGDGAPVQVCCGAFNMAVGDKVPFATIGTVMPNGMEIAQRKLRGEMSNGMLCSGAELELSDDHDGIMILDPDLALGQPLATVLGVTAETVFDIDVEPNRPEALSVIGIARDLAAKQGVPFALPEPAVPAAGTDAGDVCSIRIQDGDLCPRFAMRVLRNVTNAQSPAWMQARLDAAGMRPISTIVDISNYVMLETGHPNHTFDLDTVPDGQLIVRRAREGETLTTLDGVERHLLVPDGSGIGRGLGDGVIANRDDDPISLAGVMGGFDTEISDATTNVLLEAAVWDRMSIAHTSRRLNLRSEASTRFERGVDPLGVERALDRFCELAAELTGAQIAPGVVVAEPHPIEATVVSTRVHRVNHLLGTDLAADKMIDLLSPIGFDCSP 452          
BLAST of mRNA_M-pyrifera_M_contig68843.16549.1 vs. uniprot
Match: A0A6B1BWQ0_9ACTN (Phenylalanine--tRNA ligase beta subunit n=6 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1BWQ0_9ACTN)

HSP 1 Score: 497 bits (1280), Expect = 2.350e-167
Identity = 263/407 (64.62%), Postives = 304/407 (74.69%), Query Frame = 1
Query:    1 GADLDGIVVAKVLELAPHPEADRIQVVQVDAGDGKPLQICCGAFNMAVGDLVPLATIGTTMPGGMEIAQRKLRGQTSNGMLCSSAELELAGDADGIMILDPTLGLGAPIADALGLDSDILFDIDVEGNRPDALSVLGVARDLAAKLGVEFTPPTPSVTESGVTASSLGSVEILDGDFCRRFGFRVLEGVTLGTSPDWMASRLTAAGMRPINTIVDISNYVMLELGQPNHTYDLDTVSEGGLRVRMASDGETIETLDGKTRTLTTADGVITNKNDEAIGLAGVMGGASTEIGDSTTRVLLEAAIWDRMPIARTSRRLNLRSEASTRYERGVDFEGVERALDRFCELAIELCGATVASGAVVVDGTPLEPAVVRVRTERVNARLGSSLTTDEIAGLLTPIGFLNTPDGD 1221
            G  LDGIVVA+VL   PHP+ADRI +V VDAGDG+ LQ+CCGAFNMAVGDLVPLAT+GTTMPGGMEIA+RK+RG+ SNGMLCS AE+ +  D +GI+ILD  L LGAP+ +ALG+  D+LFD++V  NRPDA+SV+GVARDLAA+LGV F    P V E+G  A+   +V I   DFCRRFG RVL+ V  G SP WMA+RL A G RPIN +VD+SNYVM ELGQPNHTYDLD V EG L VRMA  GE + TLDG  RTLT+ DGVI N++DEAIGLAGVMGGASTEI   T  VLLEAA WD M IART+RRL LRSEAS R+ERG D E +  ALDRF ELA  L GAT + G +   G    P  VRVRT RVNA LG+ L+TDE+  LL PIGF     GD
Sbjct:   40 GQGLDGIVVAEVLSTRPHPDADRIHLVDVDAGDGEALQVCCGAFNMAVGDLVPLATVGTTMPGGMEIARRKMRGEWSNGMLCSGAEIGMGDDHEGILILDQGLSLGAPLTEALGIHPDVLFDLEVNPNRPDAMSVMGVARDLAARLGVAFAVTAPGVEEAGQPAAERAAVSIAAPDFCRRFGVRVLDNVPSGPSPRWMANRLLAVGQRPINAVVDLSNYVMFELGQPNHTYDLDLVPEGELGVRMAHKGEQLTTLDGVERTLTSYDGVIVNRDDEAIGLAGVMGGASTEISAGTRSVLLEAAWWDPMTIARTARRLGLRSEASARFERGADPEIIPMALDRFVELAAAL-GATTSPGMIDATGNRPAPITVRVRTPRVNAILGTELSTDEMTALLEPIGFACEAGGD 445          
BLAST of mRNA_M-pyrifera_M_contig68843.16549.1 vs. uniprot
Match: A0A7Y2IG78_9ACTN (Phenylalanine--tRNA ligase beta subunit n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IG78_9ACTN)

HSP 1 Score: 497 bits (1279), Expect = 4.730e-167
Identity = 261/411 (63.50%), Postives = 307/411 (74.70%), Query Frame = 1
Query:    1 GADLDGIVVAKVLELAPHPEADRIQVVQVDAGDGKPLQICCGAFNMAVGDLVPLATIGTTMPGGMEIAQRKLRGQTSNGMLCSSAELEL-AGDADGIMILDPTLGLGAPIADALGLDSDILFDIDVEGNRPDALSVLGVARDLAAKLGVEFTPPTPSVTESGVTASSLGSVEILDGDFCRRFGFRVLEGVTLGTSPDWMASRLTAAGMRPINTIVDISNYVMLELGQPNHTYDLDTVSEGGLRVRMASDGETIETLDGKTRTLTT----------ADGVITNKNDEAIGLAGVMGGASTEIGDSTTRVLLEAAIWDRMPIARTSRRLNLRSEASTRYERGVDFEGVERALDRFCELAIELCGATVASGAVVVDGTPLEPAVVRVRTERVNARLGSSLTTDEIAGLLTPIGF 1200
            GAD DGIVVA+VL+L  HPEAD+IQ+V VD GDG+ LQICCGAFNM VGD V LAT+GTTMP G+EIA+RKLRG+ SNGM+CSS+EL+L A D+ GIMIL+    LG P++ ALG  +DI+FDIDVEGNRPDALSV+G+ RDLAAK GV F  P+P V E G+ A+++ S EI+D D C RFG RVL  V  G SP WM +RL AAGMRPI+T+VDISNYVMLE G PNHT+DLDT+  G LR+R A  GE++ TLDG  R+L             DGVI N +DEAI LAGVMGG +TEI D+TT VLLEAA+WDRM IA TSRRLNLRSEASTR+ERGVD  G+ERALDRFCELA EL  A +A G V  D  P+ P +V  RT  VN  LG+ L    + GLL PIGF
Sbjct:   39 GADWDGIVVARVLDLRSHPEADKIQLVDVDIGDGEALQICCGAFNMNVGDKVALATLGTTMPDGLEIARRKLRGEWSNGMICSSSELKLEASDSHGIMILETDAELGTPLSKALGAVTDIVFDIDVEGNRPDALSVIGITRDLAAKQGVPFVVPSPKVLEGGMPAAAVCSAEIVDLDLCPRFGLRVLRNVVNGPSPVWMQNRLIAAGMRPISTVVDISNYVMLETGHPNHTFDLDTIPGGALRIRRAKPGESLRTLDGTDRSLVAPDGSGIGRGLGDGVIANASDEAISLAGVMGGFTTEISDATTNVLLEAAVWDRMSIANTSRRLNLRSEASTRFERGVDHAGLERALDRFCELAAELADAEIAPGRVFADAPPVAPVIVTTRTSMVNQLLGTDLDAAAMVGLLNPIGF 449          
BLAST of mRNA_M-pyrifera_M_contig68843.16549.1 vs. uniprot
Match: A0A2E5P161_9ACTN (Phenylalanine--tRNA ligase beta subunit n=2 Tax=root TaxID=1 RepID=A0A2E5P161_9ACTN)

HSP 1 Score: 483 bits (1243), Expect = 8.450e-162
Identity = 253/408 (62.01%), Postives = 306/408 (75.00%), Query Frame = 1
Query:    1 GADLDGIVVAKVLELAPHPEADRIQVVQVDAGDGKPLQICCGAFNMAVGDLVPLATIGTTMPGGMEIAQRKLRGQTSNGMLCSSAELELAGDADGIMILDPTLGLGAPIADALGLDSDILFDIDVEGNRPDALSVLGVARDLAAKLGVEFTPPTPSVTESGVTASSLGSVEILDGDFCRRFGFRVLEGVTLGTSPDWMASRLTAAGMRPINTIVDISNYVMLELGQPNHTYDLDTVSEGGLRVRMASDGETIETLDGKTRTLTTADGVITNKNDEAIGLAGVMGGASTEIGDSTTRVLLEAAIWDRMPIARTSRRLNLRSEASTRYERGVDFEGVERALDRFCELAIELCGATVASGAVVVDGTPLEPAVVRVRTERVNARLGSSLTTDEIAGLLTPIGFLNTPDGDD 1224
            GA LDG+VVA+VL+L PHP+ADRIQ+V VD GDG+ LQICCGAFNM+ GDLVPLAT+GTTMP GMEIA+RK+RG+ SNGMLC++ E+ L  D +GI+ILD    LG P+A+AL L  D+L+D++V  NRPDA+SV GVARDLAA+ GV F  P PS  E+G  A+   +V++LD D C RF  RVL+GV++G SP WMA+RLTA GMRPIN +VD+SNYVMLELGQPNHTYDLD V  G LRVR A++GET+ETLDG  RTL+  DGVI + NDEAIG+AG+MGGASTEI +STT V LE A WD + I R++RRL LRSEAS R+ERG D E  + A+ RF EL  E  GAT+  G V V G       +RVRT+RVN  LG+ L  DEIAGLL  I F   P  DD
Sbjct:   39 GAGLDGVVVARVLDLRPHPDADRIQLVDVDVGDGEALQICCGAFNMSAGDLVPLATLGTTMPNGMEIARRKMRGEWSNGMLCAADEIGLGADDEGILILDDDHELGRPLAEALELRPDVLYDLEVNPNRPDAMSVAGVARDLAARQGVPFARPEPSPDEAGEDAARRLTVDVLDLDLCGRFAVRVLDGVSIGPSPRWMANRLTALGMRPINRVVDVSNYVMLELGQPNHTYDLDAVQGGALRVRRATEGETVETLDGVVRTLSATDGVIADGNDEAIGIAGIMGGASTEISESTTSVALEMAWWDPISITRSARRLGLRSEASARFERGADPEVADLAMRRFAELLAE-SGATLTPGMVDVRGNTPARETIRVRTDRVNGLLGTGLERDEIAGLLESIEFSTRPADDD 445          
BLAST of mRNA_M-pyrifera_M_contig68843.16549.1 vs. uniprot
Match: A0A3D5K4M9_9ACTN (Phenylalanine--tRNA ligase beta subunit n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D5K4M9_9ACTN)

HSP 1 Score: 475 bits (1222), Expect = 2.040e-158
Identity = 255/419 (60.86%), Postives = 310/419 (73.99%), Query Frame = 1
Query:    1 GADLDGIVVAKVLELAPHPEADRIQVVQVDAGDGKPLQICCGAFNMAVGDLVPLATIGTTMPGGMEIAQRKLRGQTSNGMLCSSAELELAGDADGIMILD-------PTLGLGAPIADALGLDSDILFDIDVEGNRPDALSVLGVARDLAAKLGVEFTPPTPSVTESGVTASSLGSVEILDGDFCRRFGFRVLEGVTLGTSPDWMASRLTAAGMRPINTIVDISNYVMLELGQPNHTYDLDTVSEGG----LRVRMASDGETIETLDGKTRTLTTADGVITNKNDEAIGLAGVMGGASTEIGDSTTRVLLEAAIWDRMPIARTSRRLNLRSEASTRYERGVDFEGVERALDRFCELAIELCGATVASGAVVVDGTPLEPAVVRVRTERVNARLGSSLTTDEIAGLLTPIGFLNTPDGDD 1224
            G  LDG+VVA+VL+L PHP+ADRIQ+V VDAGDG+ LQICCGAFNM+VGDLVPLAT+GTTM  GMEIA+RK+RG+ SNGMLC++ E+ L  D DGIM+L+       PT G   P+A+AL L  D+L+D++V  NRPDA+S+ GVARDLAA+ GV F  P P  TE+G  A     VE+LD D C RF  RV++G+ +G SP W+A+RLTA GMRPIN +VD SNYVMLELGQPNHTYDL  + +GG    LRVR A +GE +ETLDG+ RTLT +DGVI +  D AIG+AG+MGGASTE+ D+TT +LLE A WD M I  +SRRL LRSEAS R+ERG D E  ERA+ RF EL  +  GAT+A G V V G   + + VRVRT RVNA LG+ LT DE+A LLT I F NTP GDD
Sbjct:   39 GGGLDGVVVARVLDLRPHPDADRIQLVDVDAGDGEALQICCGAFNMSVGDLVPLATLGTTMANGMEIARRKMRGEWSNGMLCAAEEIGLGDDQDGIMVLEGSSADDGPTPG--TPLAEALELVPDVLYDLEVNPNRPDAMSIAGVARDLAARQGVAFALPVPDATETGEDAVGRIGVEVLDPDLCGRFVARVVDGIRVGPSPRWLANRLTALGMRPINNVVDASNYVMLELGQPNHTYDLAALGDGGGAVALRVRRAIEGEALETLDGEVRTLTASDGVIADGTDTAIGIAGIMGGASTEVSDNTTSILLEMAWWDPMTITTSSRRLGLRSEASARFERGSDPEVAERAMRRFVELLAD-AGATLAPGVVDVRGNLPDRSPVRVRTSRVNALLGTDLTRDEMADLLTSIEFTNTPVGDD 454          
BLAST of mRNA_M-pyrifera_M_contig68843.16549.1 vs. uniprot
Match: A0A2E5ZL13_9ACTN (Phenylalanine--tRNA ligase beta subunit n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5ZL13_9ACTN)

HSP 1 Score: 474 bits (1219), Expect = 5.290e-158
Identity = 252/409 (61.61%), Postives = 304/409 (74.33%), Query Frame = 1
Query:    1 GADLDGIVVAKVLELAPHPEADRIQVVQVDAGDGKPLQICCGAFNMAVGDLVPLATIGTTMPGGMEIAQRKLRGQTSNGMLCSSAELELAGDADGIMILDPTLGLGAPIADALGLDSDILFDIDVEGNRPDALSVLGVARDLAAKLGVEFTPPTPSVTESGVTASSLGSVEILDGDFCRRFGFRVLEGVTLGTSPDWMASRLTAAGMRPINTIVDISNYVMLELGQPNHTYDLDTV-----SEGGLRVRMASDGETIETLDGKTRTLTTADGVITNKNDEAIGLAGVMGGASTEIGDSTTRVLLEAAIWDRMPIARTSRRLNLRSEASTRYERGVDFEGVERALDRFCELAIELCGATVASGAVVVDGTPLEPAVVRVRTERVNARLGSSLTTDEIAGLLTPIGFLNTP 1212
            G  LDGIVVA+VL+L PHP+ADRIQ+V VD GDG+ LQICCGAFNM+VGDLVPLAT+GTTMP GMEIA+RK+RG+ SNGMLCSS E+ L  D DGIM+L+  L LG P+ +AL +  D+L+D++V  NRPDA+SV GVARDLAA+ G  F+ P PS  E G  A+   SVE+LD   C RF  RVL+G+ +G SP W+A+RLTA GMRPIN +VD+SNYVMLELGQPNHTYDLD +     S   LRVR A+DGET+ETLDG  RTL+  DGVI +  D A+G+AG+MGGASTEIGD+T  V LE A WD   I+ +SRRL LRSEAS R+ERG D E  + A+ RF EL  E  GAT+A G V V G   + + VRVRT RVNA LG+ L+ DE+AGLL PIGF   P
Sbjct:   39 GGGLDGIVVARVLDLRPHPDADRIQLVDVDLGDGEALQICCGAFNMSVGDLVPLATLGTTMPNGMEIARRKMRGEWSNGMLCSSQEIGLGDDHDGIMLLESRLDLGTPLVEALEIRPDVLYDLEVNPNRPDAMSVAGVARDLAARQGAPFSLPDPSPGEVGDDATGRLSVEVLDPVLCGRFVARVLDGIAIGPSPRWLANRLTALGMRPINNVVDVSNYVMLELGQPNHTYDLDALAARSGSGAVLRVRRAADGETVETLDGVVRTLSATDGVIADAEDVAVGIAGIMGGASTEIGDATVSVALEMAWWDPQVISTSSRRLGLRSEASARFERGADPEAADLAMRRFAELLSE-AGATLAPGTVDVRGEVPDRSPVRVRTGRVNALLGTDLSRDEMAGLLQPIGFTAEP 446          
BLAST of mRNA_M-pyrifera_M_contig68843.16549.1 vs. uniprot
Match: A0A2E8LIW8_9ACTN (Phenylalanine--tRNA ligase beta subunit n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LIW8_9ACTN)

HSP 1 Score: 471 bits (1213), Expect = 2.740e-157
Identity = 254/408 (62.25%), Postives = 301/408 (73.77%), Query Frame = 1
Query:    1 GADLDGIVVAKVLELAPHPEADRIQVVQVDAGDGKPLQICCGAFNMAVGDLVPLATIGTTMPGGMEIAQRKLRGQTSNGMLCSSAELELAGDADGIMILDPTLGLGAPIADALGLDSDILFDIDVEGNRPDALSVLGVARDLAAKLGVEFTPPTPSVTESGVTASSLGSVEILDGDFCRRFGFRVLEGVTLGTSPDWMASRLTAAGMRPINTIVDISNYVMLELGQPNHTYDLDTVSEGGLRVRMASDGETIETLDGKTRTLTTADGVITNKNDEAIGLAGVMGGASTEIGDSTTRVLLEAAIWDRMPIARTSRRLNLRSEASTRYERGVDFEGVERALDRFCELAIELCGATVASGAVVVDGTPLEPAVVRVRTERVNARLGSSLTTDEIAGLLTPIGFLNTPDGDD 1224
            G  LDGIVVA+VL+L  HP+ADRIQ+V VDAGDG+ LQICCGAFNM+VGDLVPLAT+G  MPGG+EIA+RKLRG+ SNGMLCS  E+ L  DADGI++LD     G P+ +AL L  D+L+D++V  NRPDA+SV GVARDLAA+ GV F  P P+V ESG  A+   +VEILD D C RFG RVL+GV +GTSP W+A+RLTA G RPIN++VD+SNYVMLELGQPNHTYDLD V+    RVR A+DGE IETLDG  RTLT ADGVI + +D AIG+AG+MGGA+TEI DSTT V LE A WD M IA + RRL LRSEAS R+ERG D E V+ A+ RF EL +   GAT+A   V   G       +RVRT RVNA LG+ L    IA +L  IGF  T  GDD
Sbjct:   39 GEGLDGIVVARVLDLRRHPDADRIQLVDVDAGDGEALQICCGAFNMSVGDLVPLATLGAVMPGGLEIARRKLRGEWSNGMLCSPTEIGLGDDADGILLLDGDPTPGTPLTEALDLRPDVLYDLEVNPNRPDAMSVAGVARDLAARQGVPFAIPEPAVAESGDGAAGRATVEILDEDLCGRFGLRVLDGVVVGTSPRWLANRLTALGQRPINSVVDVSNYVMLELGQPNHTYDLDRVAGAAFRVRRAADGEVIETLDGVERTLTAADGVIADGDDTAIGIAGIMGGANTEIDDSTTSVALEMAWWDPMTIATSGRRLGLRSEASARFERGCDPEVVDLAMRRFAEL-LAPSGATLAPDLVDARGNLPAREAIRVRTGRVNALLGTDLGRGRIAEVLQSIGFGVTEAGDD 445          
BLAST of mRNA_M-pyrifera_M_contig68843.16549.1 vs. uniprot
Match: A0A520XTH1_9ACTN (Phenylalanine--tRNA ligase beta subunit n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XTH1_9ACTN)

HSP 1 Score: 471 bits (1211), Expect = 7.730e-157
Identity = 248/412 (60.19%), Postives = 303/412 (73.54%), Query Frame = 1
Query:    1 GADLDGIVVAKVLELAPHPEADRIQVVQVDAGDGKPLQICCGAFNMAVGDLVPLATIGTTMPGGMEIAQRKLRGQTSNGMLCSSAELELAGDADGIMILDPTLG---LGAPIADALGLDSDILFDIDVEGNRPDALSVLGVARDLAAKLGVEFTPPTPSVTESGVTASSLGSVEILDGDFCRRFGFRVLEGVTLGTSPDWMASRLTAAGMRPINTIVDISNYVMLELGQPNHTYDLDTVSEGGLRVRMASDGETIETLDGKTRTLTTADGVITNKNDEAIGLAGVMGGASTEIGDSTTRVLLEAAIWDRMPIARTSRRLNLRSEASTRYERGVDF-EGVERALDRFCELAIELCGATVASGAVVVDGTPLEPAVVRVRTERVNARLGSSLTTDEIAGLLTPIGFLNTPDGDD 1224
            G  LDG+V+AKVLEL+PHP+AD+IQ+VQVDAGDG+PLQ+CCGAFNMAVGDLVP ATIGT MP GMEIAQRK+RGQ SNGM CS+ E+ +  DADGIMIL        LG PIAD LG++ D+L+D++V  NRPDA+SV GVARDLAA LGV F  P  +V  SG  A+S   +EI+D   C RF  R+L  V +G SP W+ +RL A GMRPIN++VDISNYVMLELGQPNH +DLDT+  G LRVR A++GET+ TLDG  RTL + DGVI N +DEAI LAGVMGG  TE+ DSTT VLLE A WD   I+RT +R NL SEASTR+ RG D+ E ++RA+DRFCEL I   GAT+A G + V GT  +      R  ++N+ LG+ +T +E+ G L+ IGF  T  GDD
Sbjct:   40 GEGLDGVVLAKVLELSPHPDADKIQLVQVDAGDGEPLQVCCGAFNMAVGDLVPFATIGTVMPNGMEIAQRKMRGQMSNGMCCSAIEIGMGEDADGIMILTEQADESQLGQPIADVLGVEQDVLYDLEVNANRPDAMSVAGVARDLAAALGVPFAFPDRTVERSGEDAASQAQIEIIDPVLCGRFVARILHNVIVGESPQWIQNRLIALGMRPINSVVDISNYVMLELGQPNHVFDLDTIPNGHLRVRRATEGETMVTLDGAERTLISLDGVIANGSDEAISLAGVMGGHDTEVTDSTTSVLLEMAWWDPPSISRTIKRHNLPSEASTRFRRGADWGENIDRAMDRFCEL-IAQTGATIAPGQIDVPGTTPQQGHSTARVSKMNSLLGTDMTAEEMVGHLSSIGFTTTAAGDD 450          
BLAST of mRNA_M-pyrifera_M_contig68843.16549.1 vs. uniprot
Match: A0A2E9W2C2_9ACTN (Phenylalanine--tRNA ligase beta subunit n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A2E9W2C2_9ACTN)

HSP 1 Score: 470 bits (1210), Expect = 7.750e-157
Identity = 253/409 (61.86%), Postives = 314/409 (76.77%), Query Frame = 1
Query:    1 GADLDGIVVAKVLELAPHPEADRIQVVQVDAGDGKPLQICCGAFNMAVGDLVPLATIGTTMPGGMEIAQRKLRGQTSNGMLCSSAELELAGDADGIMILDPTLGLGAPIADALGLDSDILFDIDVEGNRPDALSVLGVARDLAAKLGVEFTPPTPSVTESGVTASSLGSVEILDGDFCRRFGFRVLEGVTLGTSPDWMASRLTAAGMRPINTIVDISNYVMLELGQPNHTYDLDTVSEGGLRVRMASDGETIETLDGKTRTLTTADGVITNKNDEAIGLAGVMGGASTEIGDSTTRVLLEAAIWDRMPIARTSRRLNLRSEASTRYERGVDFEGVERALDRFCELAIELCGATVASGAVVVDG-TPLEPAVVRVRTERVNARLGSSLTTDEIAGLLTPIGFLN-TPDGD 1221
            G  LDGIVVA+V+E+ PHP+ADRIQ+VQVD GDG+ LQICCGAFNM+VGDLVPLAT+GT MP GMEIA+RK+RG+ SNGMLCS  E+ +  D DGI++LD +L +G P+A+A+GL SD+LFD++V  NRPDA+SV GVARDLAA  G+ FT P+P+V ESG+ A+   SVEILD   C RF  RVL+G+T+G+SP WMA+RLT+ GMRPIN++VD+SNYVMLELGQP+HTYDLD V+    RVR A  GE++ TLDG  RTLT ADGV+ + +D AIG+AGVMGGASTEI D T+ V LE A WD M IA ++RRL LRSEAS R+E+G D E  + A+ RF EL  E  GA++A GAV V G TP+  ++ RVRT+RVN  LG+ L+ D IA LL  I F N   DGD
Sbjct:   39 GEGLDGIVVARVIEVGPHPDADRIQLVQVDVGDGEALQICCGAFNMSVGDLVPLATLGTVMPDGMEIARRKMRGEWSNGMLCSPTEIAMGDDHDGILLLDGSLEVGRPLAEAMGLASDVLFDLEVNPNRPDAMSVAGVARDLAACQGMPFTLPSPNVAESGIDAAERLSVEILDPVLCGRFVARVLDGITIGSSPAWMANRLTSLGMRPINSVVDVSNYVMLELGQPSHTYDLDMVAGSTFRVRRALPGESLVTLDGVERTLTEADGVVADVDDTAIGIAGVMGGASTEIHDGTSSVALEMAWWDPMSIATSARRLGLRSEASARFEKGADPEVADLAMRRFAELLGE-AGASLAPGAVDVRGDTPVRESI-RVRTDRVNRILGTDLSRDRIAELLGSIEFANHVVDGD 445          
BLAST of mRNA_M-pyrifera_M_contig68843.16549.1 vs. uniprot
Match: A0A3D5GH28_9ACTN (Phenylalanine--tRNA ligase beta subunit n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D5GH28_9ACTN)

HSP 1 Score: 467 bits (1202), Expect = 3.330e-155
Identity = 249/408 (61.03%), Postives = 303/408 (74.26%), Query Frame = 1
Query:    1 GADLDGIVVAKVLELAPHPEADRIQVVQVDAGDGKPLQICCGAFNMAVGDLVPLATIGTTMPGGMEIAQRKLRGQTSNGMLCSSAELELAGDADGIMILDPTLGLGAPIADALGLDSDILFDIDVEGNRPDALSVLGVARDLAAKLGVEFTPPTPSVTESGVTASSLGSVEILDGDFCRRFGFRVLEGVTLGTSPDWMASRLTAAGMRPINTIVDISNYVMLELGQPNHTYDLDTVSEGGLRVRMASDGETIETLDGKTRTLTTADGVITNKNDEAIGLAGVMGGASTEIGDSTTRVLLEAAIWDRMPIARTSRRLNLRSEASTRYERGVDFEGVERALDRFCELAIELCGATVASGAVVVDGTPLEPAVVRVRTERVNARLGSSLTTDEIAGLLTPIGFLNTPDGDD 1224
            G  LDGIVVA+VLEL PHP+ADRIQ+V VDAGDG+ LQICCGAFNM+ GDLVPLAT+GTTMP GMEIA+RK+RGQ SNGMLCS  E+ L    DGI++L   L +GAP+ +AL L  DIL+D++V  NRPDA+SV GVARDLAA+ GV F  P P   E G +A    +VE+LD   C RF  RVL+ +T+G SP+W+ +RLTA GMRPIN +VD+SNYVMLELGQP+HTYDLD V    LRVR A DGETIETLDG  RTL + DGVI + +++AIG+AG+MGGASTE+ +STT V LE A WD   I+ +SRRL LRSEAS R+ERG D E  + A+ RF EL +   GAT+A G V V G+      VRVRT RVN  LG++L+ DE+A LL PIGF++ P G D
Sbjct:   69 GGGLDGIVVARVLELRPHPDADRIQLVDVDAGDGEVLQICCGAFNMSAGDLVPLATLGTTMPDGMEIARRKMRGQWSNGMLCSPEEIGLGEGQDGILLLGSELEVGAPLVEALELQPDILYDLEVNPNRPDAMSVAGVARDLAARQGVPFVLPDPRPAEVGESAGGRLTVEVLDPVLCGRFVARVLDQITIGPSPNWLVNRLTALGMRPINNVVDVSNYVMLELGQPSHTYDLDAVVGSKLRVRRAVDGETIETLDGVDRTLGSTDGVIADGDNQAIGIAGIMGGASTEVSESTTSVALEMAWWDPQSISTSSRRLGLRSEASARFERGADPEVADLAMRRFAELLVG-AGATLAPGVVDVRGSVPNRLPVRVRTARVNDLLGTALSRDEMAALLGPIGFISEPAGGD 475          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68843.16549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2DL51_9ACTN3.360e-17064.25Phenylalanine--tRNA ligase beta subunit n=1 Tax=Ac... [more]
A0A6B1BWQ0_9ACTN2.350e-16764.62Phenylalanine--tRNA ligase beta subunit n=6 Tax=Ac... [more]
A0A7Y2IG78_9ACTN4.730e-16763.50Phenylalanine--tRNA ligase beta subunit n=1 Tax=Ac... [more]
A0A2E5P161_9ACTN8.450e-16262.01Phenylalanine--tRNA ligase beta subunit n=2 Tax=ro... [more]
A0A3D5K4M9_9ACTN2.040e-15860.86Phenylalanine--tRNA ligase beta subunit n=1 Tax=Ac... [more]
A0A2E5ZL13_9ACTN5.290e-15861.61Phenylalanine--tRNA ligase beta subunit n=1 Tax=Ac... [more]
A0A2E8LIW8_9ACTN2.740e-15762.25Phenylalanine--tRNA ligase beta subunit n=1 Tax=Ac... [more]
A0A520XTH1_9ACTN7.730e-15760.19Phenylalanine--tRNA ligase beta subunit n=1 Tax=Ac... [more]
A0A2E9W2C2_9ACTN7.750e-15761.86Phenylalanine--tRNA ligase beta subunit n=3 Tax=Ac... [more]
A0A3D5GH28_9ACTN3.330e-15561.03Phenylalanine--tRNA ligase beta subunit n=3 Tax=Ac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68843contigM-pyrifera_M_contig68843:2..1225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score408.7
Seed ortholog evalue3.2e-111
Seed eggNOG ortholog1229780.BN381_290127
Preferred namepheT
KEGG rclassRC00055,RC00523
KEGG koko:K01890
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0019538,GO:0019752,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494
EggNOG free text desc.Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
EggNOG OGs2GMFD@201174,3UW7Y@52018,COG0072@1,COG0072@2
EC6.1.1.20
COG Functional cat.J
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons1
Model size1224
Cds size1224
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.6860943-CDS-M-pyrifera_M_contig68843:1..12251622816580.6860943-CDS-M-pyrifera_M_contig68843:1..1225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68843 2..1225 +
1692278058.770255-CDS-M-pyrifera_M_contig68843:1..12251692278058.770255-CDS-M-pyrifera_M_contig68843:1..1225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68843 2..1225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68843.16549.1prot_M-pyrifera_M_contig68843.16549.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68843 2..1225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68843.16549.1

>prot_M-pyrifera_M_contig68843.16549.1 ID=prot_M-pyrifera_M_contig68843.16549.1|Name=mRNA_M-pyrifera_M_contig68843.16549.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=408bp
GADLDGIVVAKVLELAPHPEADRIQVVQVDAGDGKPLQICCGAFNMAVGD
LVPLATIGTTMPGGMEIAQRKLRGQTSNGMLCSSAELELAGDADGIMILD
PTLGLGAPIADALGLDSDILFDIDVEGNRPDALSVLGVARDLAAKLGVEF
TPPTPSVTESGVTASSLGSVEILDGDFCRRFGFRVLEGVTLGTSPDWMAS
RLTAAGMRPINTIVDISNYVMLELGQPNHTYDLDTVSEGGLRVRMASDGE
TIETLDGKTRTLTTADGVITNKNDEAIGLAGVMGGASTEIGDSTTRVLLE
AAIWDRMPIARTSRRLNLRSEASTRYERGVDFEGVERALDRFCELAIELC
GATVASGAVVVDGTPLEPAVVRVRTERVNARLGSSLTTDEIAGLLTPIGF
LNTPDGDD
back to top

mRNA from alignment at M-pyrifera_M_contig68843:2..1225+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68843.16549.1 ID=mRNA_M-pyrifera_M_contig68843.16549.1|Name=mRNA_M-pyrifera_M_contig68843.16549.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at M-pyrifera_M_contig68843:2..1225+ (Macrocystis pyrifera P11B4 male)
GGTGCCGACCTCGACGGGATCGTCGTCGCCAAGGTGCTCGAGTTGGCGCC TCATCCCGAAGCCGACCGGATCCAGGTGGTCCAGGTCGATGCCGGCGACG GCAAGCCACTGCAGATCTGTTGTGGTGCGTTCAACATGGCAGTCGGCGAT CTGGTGCCCTTGGCCACGATCGGCACGACCATGCCCGGCGGTATGGAGAT CGCCCAGCGCAAGCTCCGGGGGCAGACCTCCAACGGGATGCTCTGCTCGT CGGCCGAGCTCGAGCTCGCAGGTGACGCCGACGGCATCATGATCCTCGAC CCGACGCTGGGACTCGGCGCCCCGATCGCCGATGCGCTCGGGCTCGACTC CGACATCCTCTTCGACATCGACGTCGAGGGCAATCGCCCCGATGCGCTGT CGGTGCTCGGCGTTGCTCGTGACCTCGCGGCGAAGCTCGGTGTCGAGTTC ACCCCGCCCACCCCGAGCGTCACCGAATCAGGGGTCACAGCCTCGTCGCT CGGCTCGGTCGAGATCCTCGACGGCGACTTCTGTCGCCGCTTCGGGTTCC GAGTGCTCGAGGGCGTCACGCTCGGTACGTCACCCGACTGGATGGCCTCA CGCCTGACCGCCGCCGGGATGCGGCCGATCAACACCATCGTCGACATCTC GAACTACGTGATGCTCGAGCTCGGCCAGCCGAACCACACCTACGACCTCG ACACCGTGTCCGAGGGTGGGCTCCGGGTGCGTATGGCATCCGATGGCGAG ACCATCGAGACGCTCGACGGCAAGACCCGAACTCTGACCACCGCCGACGG CGTCATCACGAACAAGAACGACGAGGCCATCGGCCTTGCCGGCGTCATGG GAGGAGCGTCCACCGAGATCGGTGATTCGACCACCCGAGTCCTGCTCGAA GCAGCCATCTGGGACCGGATGCCGATCGCCCGAACCTCTCGGCGGCTCAA CCTGCGCTCCGAGGCCTCCACTCGCTACGAGCGAGGTGTCGACTTCGAGG GCGTCGAACGGGCATTGGACCGGTTCTGCGAACTGGCGATCGAACTCTGC GGCGCTACCGTGGCGAGCGGTGCGGTCGTGGTCGACGGCACCCCCCTCGA GCCGGCGGTCGTGCGTGTTCGGACCGAGCGTGTGAACGCACGCCTCGGGT CAAGCCTCACCACCGACGAGATCGCCGGGCTGCTGACCCCGATCGGATTC CTCAACACGCCCGACGGCGATGAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig68843:2..1225+

>mRNA_M-pyrifera_M_contig68843.16549.1 ID=mRNA_M-pyrifera_M_contig68843.16549.1|Name=mRNA_M-pyrifera_M_contig68843.16549.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2448bp|location=Sequence derived from alignment at M-pyrifera_M_contig68843:2..1225+ (Macrocystis pyrifera P11B4 male)
GGTGCCGACCTCGACGGGATCGTCGTCGCCAAGGTGCTCGAGTTGGCGCC
TCATCCCGAAGCCGACCGGATCCAGGTGGTCCAGGTCGATGCCGGCGACG
GCAAGCCACTGCAGATCTGTTGTGGTGCGTTCAACATGGCAGTCGGCGAT
CTGGTGCCCTTGGCCACGATCGGCACGACCATGCCCGGCGGTATGGAGAT
CGCCCAGCGCAAGCTCCGGGGGCAGACCTCCAACGGGATGCTCTGCTCGT
CGGCCGAGCTCGAGCTCGCAGGTGACGCCGACGGCATCATGATCCTCGAC
CCGACGCTGGGACTCGGCGCCCCGATCGCCGATGCGCTCGGGCTCGACTC
CGACATCCTCTTCGACATCGACGTCGAGGGCAATCGCCCCGATGCGCTGT
CGGTGCTCGGCGTTGCTCGTGACCTCGCGGCGAAGCTCGGTGTCGAGTTC
ACCCCGCCCACCCCGAGCGTCACCGAATCAGGGGTCACAGCCTCGTCGCT
CGGCTCGGTCGAGATCCTCGACGGCGACTTCTGTCGCCGCTTCGGGTTCC
GAGTGCTCGAGGGCGTCACGCTCGGTACGTCACCCGACTGGATGGCCTCA
CGCCTGACCGCCGCCGGGATGCGGCCGATCAACACCATCGTCGACATCTC
GAACTACGTGATGCTCGAGCTCGGCCAGCCGAACCACACCTACGACCTCG
ACACCGTGTCCGAGGGTGGGCTCCGGGTGCGTATGGCATCCGATGGCGAG
ACCATCGAGACGCTCGACGGCAAGACCCGAACTCTGACCACCGCCGACGG
CGTCATCACGAACAAGAACGACGAGGCCATCGGCCTTGCCGGCGTCATGG
GAGGAGCGTCCACCGAGATCGGTGATTCGACCACCCGAGTCCTGCTCGAA
GCAGCCATCTGGGACCGGATGCCGATCGCCCGAACCTCTCGGCGGCTCAA
CCTGCGCTCCGAGGCCTCCACTCGCTACGAGCGAGGTGTCGACTTCGAGG
GCGTCGAACGGGCATTGGACCGGTTCTGCGAACTGGCGATCGAACTCTGC
GGCGCTACCGTGGCGAGCGGTGCGGTCGTGGTCGACGGCACCCCCCTCGA
GCCGGCGGTCGTGCGTGTTCGGACCGAGCGTGTGAACGCACGCCTCGGGT
CAAGCCTCACCACCGACGAGATCGCCGGGCTGCTGACCCCGATCGGATTC
CTCAACACGCCCGACGGCGATGACGGTGCCGACCTCGACGGGATCGTCGT
CGCCAAGGTGCTCGAGTTGGCGCCTCATCCCGAAGCCGACCGGATCCAGG
TGGTCCAGGTCGATGCCGGCGACGGCAAGCCACTGCAGATCTGTTGTGGT
GCGTTCAACATGGCAGTCGGCGATCTGGTGCCCTTGGCCACGATCGGCAC
GACCATGCCCGGCGGTATGGAGATCGCCCAGCGCAAGCTCCGGGGGCAGA
CCTCCAACGGGATGCTCTGCTCGTCGGCCGAGCTCGAGCTCGCAGGTGAC
GCCGACGGCATCATGATCCTCGACCCGACGCTGGGACTCGGCGCCCCGAT
CGCCGATGCGCTCGGGCTCGACTCCGACATCCTCTTCGACATCGACGTCG
AGGGCAATCGCCCCGATGCGCTGTCGGTGCTCGGCGTTGCTCGTGACCTC
GCGGCGAAGCTCGGTGTCGAGTTCACCCCGCCCACCCCGAGCGTCACCGA
ATCAGGGGTCACAGCCTCGTCGCTCGGCTCGGTCGAGATCCTCGACGGCG
ACTTCTGTCGCCGCTTCGGGTTCCGAGTGCTCGAGGGCGTCACGCTCGGT
ACGTCACCCGACTGGATGGCCTCACGCCTGACCGCCGCCGGGATGCGGCC
GATCAACACCATCGTCGACATCTCGAACTACGTGATGCTCGAGCTCGGCC
AGCCGAACCACACCTACGACCTCGACACCGTGTCCGAGGGTGGGCTCCGG
GTGCGTATGGCATCCGATGGCGAGACCATCGAGACGCTCGACGGCAAGAC
CCGAACTCTGACCACCGCCGACGGCGTCATCACGAACAAGAACGACGAGG
CCATCGGCCTTGCCGGCGTCATGGGAGGAGCGTCCACCGAGATCGGTGAT
TCGACCACCCGAGTCCTGCTCGAAGCAGCCATCTGGGACCGGATGCCGAT
CGCCCGAACCTCTCGGCGGCTCAACCTGCGCTCCGAGGCCTCCACTCGCT
ACGAGCGAGGTGTCGACTTCGAGGGCGTCGAACGGGCATTGGACCGGTTC
TGCGAACTGGCGATCGAACTCTGCGGCGCTACCGTGGCGAGCGGTGCGGT
CGTGGTCGACGGCACCCCCCTCGAGCCGGCGGTCGTGCGTGTTCGGACCG
AGCGTGTGAACGCACGCCTCGGGTCAAGCCTCACCACCGACGAGATCGCC
GGGCTGCTGACCCCGATCGGATTCCTCAACACGCCCGACGGCGATGAC
back to top