mRNA_M-pyrifera_M_contig68697.16516.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68697.16516.1
Unique NamemRNA_M-pyrifera_M_contig68697.16516.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68697.16516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68697contigM-pyrifera_M_contig68697:5..1150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1146
Cds size1146
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816578.7216141-CDS-M-pyrifera_M_contig68697:4..11501622816578.7216141-CDS-M-pyrifera_M_contig68697:4..1150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68697 5..1150 +
1692278057.8340187-CDS-M-pyrifera_M_contig68697:4..11501692278057.8340187-CDS-M-pyrifera_M_contig68697:4..1150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68697 5..1150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68697.16516.1prot_M-pyrifera_M_contig68697.16516.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68697 5..1150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68697.16516.1

>prot_M-pyrifera_M_contig68697.16516.1 ID=prot_M-pyrifera_M_contig68697.16516.1|Name=mRNA_M-pyrifera_M_contig68697.16516.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=382bp
LQQAQLGKSKALCALNKKREAQKILRNYCKNYPQDGEGLSLYSHLLFDVG
NYKDALRKILKAIELKYVLSASRLFKVEILLKANNMSAAKEELSDLFAVK
EISESSQFFYLQGNYYEQNNEFEKAKSAYEKGLEIEPRNVAMRWRLATLC
YSKQSYKDCLQILNNINKVERDDKFYELRAKAHFAQEMHEKANEDFSKFI
NLDEAVEDELLYMYAACLDTLDNTEMALLIINQLLNVDPSHFKALLMRVS
LLTKLGKYSEVLDSCDQALKQKPENLVAISSKISAYIILENYEQAAELCN
KFFAKNEKSIDNIKVIRLFALIEYHQSNFKLAIDNFLLLEQFSVSISADY
EKCSESYYNLGMYEKALLTSVKIENSKTKEDM
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mRNA from alignment at M-pyrifera_M_contig68697:5..1150+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68697.16516.1 ID=mRNA_M-pyrifera_M_contig68697.16516.1|Name=mRNA_M-pyrifera_M_contig68697.16516.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at M-pyrifera_M_contig68697:5..1150+ (Macrocystis pyrifera P11B4 male)
CTTCAGCAAGCACAATTGGGGAAGAGTAAAGCATTGTGCGCTTTGAATAA
GAAAAGAGAAGCTCAGAAAATATTAAGAAATTATTGTAAAAATTATCCAC
AAGATGGAGAGGGGCTGAGCCTATATTCACATTTATTATTCGATGTAGGA
AATTATAAAGATGCATTGCGAAAAATATTAAAAGCAATCGAATTGAAATA
CGTTTTGTCTGCAAGCAGATTATTCAAAGTAGAAATTTTATTAAAAGCAA
ATAATATGAGTGCTGCTAAAGAAGAGCTGTCTGATCTTTTTGCTGTAAAA
GAAATATCGGAAAGCAGTCAGTTTTTCTATTTACAAGGTAATTATTATGA
ACAGAATAACGAGTTTGAAAAAGCCAAAAGTGCGTACGAGAAAGGGCTAG
AGATTGAACCTAGAAATGTTGCAATGCGATGGAGACTTGCGACACTTTGT
TATAGCAAGCAATCTTACAAAGATTGCTTGCAAATATTAAATAATATAAA
CAAAGTTGAACGTGATGATAAGTTTTATGAATTGCGTGCAAAAGCTCATT
TTGCACAAGAGATGCATGAAAAGGCAAATGAGGACTTTTCTAAATTTATT
AATCTTGATGAAGCTGTAGAAGATGAGCTGTTGTATATGTATGCAGCCTG
TCTGGATACATTAGATAATACTGAAATGGCATTGTTAATTATTAATCAGT
TGCTGAATGTGGACCCTAGTCATTTTAAAGCTCTTTTAATGCGTGTGAGT
TTATTAACAAAGCTGGGCAAATATTCTGAAGTATTAGATTCTTGTGATCA
AGCGCTGAAACAAAAGCCAGAGAATCTAGTGGCAATCTCAAGTAAAATTT
CTGCGTATATTATACTTGAAAATTACGAGCAGGCAGCTGAATTGTGCAAT
AAGTTTTTTGCTAAAAATGAGAAGTCTATTGATAATATTAAGGTTATTAG
ACTGTTTGCGCTGATTGAATATCATCAATCTAATTTTAAATTGGCTATCG
ATAATTTTTTGTTATTAGAACAATTTTCGGTATCGATATCAGCTGATTAT
GAAAAATGTTCTGAGTCTTATTATAACTTAGGTATGTACGAAAAAGCATT
GCTAACATCTGTAAAAATTGAAAATTCAAAAACCAAAGAAGATATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68697:5..1150+

>mRNA_M-pyrifera_M_contig68697.16516.1 ID=mRNA_M-pyrifera_M_contig68697.16516.1|Name=mRNA_M-pyrifera_M_contig68697.16516.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2292bp|location=Sequence derived from alignment at M-pyrifera_M_contig68697:5..1150+ (Macrocystis pyrifera P11B4 male)
CTTCAGCAAGCACAATTGGGGAAGAGTAAAGCATTGTGCGCTTTGAATAA
GAAAAGAGAAGCTCAGAAAATATTAAGAAATTATTGTAAAAATTATCCAC
AAGATGGAGAGGGGCTGAGCCTATATTCACATTTATTATTCGATGTAGGA
AATTATAAAGATGCATTGCGAAAAATATTAAAAGCAATCGAATTGAAATA
CGTTTTGTCTGCAAGCAGATTATTCAAAGTAGAAATTTTATTAAAAGCAA
ATAATATGAGTGCTGCTAAAGAAGAGCTGTCTGATCTTTTTGCTGTAAAA
GAAATATCGGAAAGCAGTCAGTTTTTCTATTTACAAGGTAATTATTATGA
ACAGAATAACGAGTTTGAAAAAGCCAAAAGTGCGTACGAGAAAGGGCTAG
AGATTGAACCTAGAAATGTTGCAATGCGATGGAGACTTGCGACACTTTGT
TATAGCAAGCAATCTTACAAAGATTGCTTGCAAATATTAAATAATATAAA
CAAAGTTGAACGTGATGATAAGTTTTATGAATTGCGTGCAAAAGCTCATT
TTGCACAAGAGATGCATGAAAAGGCAAATGAGGACTTTTCTAAATTTATT
AATCTTGATGAAGCTGTAGAAGATGAGCTGTTGTATATGTATGCAGCCTG
TCTGGATACATTAGATAATACTGAAATGGCATTGTTAATTATTAATCAGT
TGCTGAATGTGGACCCTAGTCATTTTAAAGCTCTTTTAATGCGTGTGAGT
TTATTAACAAAGCTGGGCAAATATTCTGAAGTATTAGATTCTTGTGATCA
AGCGCTGAAACAAAAGCCAGAGAATCTAGTGGCAATCTCAAGTAAAATTT
CTGCGTATATTATACTTGAAAATTACGAGCAGGCAGCTGAATTGTGCAAT
AAGTTTTTTGCTAAAAATGAGAAGTCTATTGATAATATTAAGGTTATTAG
ACTGTTTGCGCTGATTGAATATCATCAATCTAATTTTAAATTGGCTATCG
ATAATTTTTTGTTATTAGAACAATTTTCGGTATCGATATCAGCTGATTAT
GAAAAATGTTCTGAGTCTTATTATAACTTAGGTATGTACGAAAAAGCATT
GCTAACATCTGTAAAAATTGAAAATTCAAAAACCAAAGAAGATATGCTTC
AGCAAGCACAATTGGGGAAGAGTAAAGCATTGTGCGCTTTGAATAAGAAA
AGAGAAGCTCAGAAAATATTAAGAAATTATTGTAAAAATTATCCACAAGA
TGGAGAGGGGCTGAGCCTATATTCACATTTATTATTCGATGTAGGAAATT
ATAAAGATGCATTGCGAAAAATATTAAAAGCAATCGAATTGAAATACGTT
TTGTCTGCAAGCAGATTATTCAAAGTAGAAATTTTATTAAAAGCAAATAA
TATGAGTGCTGCTAAAGAAGAGCTGTCTGATCTTTTTGCTGTAAAAGAAA
TATCGGAAAGCAGTCAGTTTTTCTATTTACAAGGTAATTATTATGAACAG
AATAACGAGTTTGAAAAAGCCAAAAGTGCGTACGAGAAAGGGCTAGAGAT
TGAACCTAGAAATGTTGCAATGCGATGGAGACTTGCGACACTTTGTTATA
GCAAGCAATCTTACAAAGATTGCTTGCAAATATTAAATAATATAAACAAA
GTTGAACGTGATGATAAGTTTTATGAATTGCGTGCAAAAGCTCATTTTGC
ACAAGAGATGCATGAAAAGGCAAATGAGGACTTTTCTAAATTTATTAATC
TTGATGAAGCTGTAGAAGATGAGCTGTTGTATATGTATGCAGCCTGTCTG
GATACATTAGATAATACTGAAATGGCATTGTTAATTATTAATCAGTTGCT
GAATGTGGACCCTAGTCATTTTAAAGCTCTTTTAATGCGTGTGAGTTTAT
TAACAAAGCTGGGCAAATATTCTGAAGTATTAGATTCTTGTGATCAAGCG
CTGAAACAAAAGCCAGAGAATCTAGTGGCAATCTCAAGTAAAATTTCTGC
GTATATTATACTTGAAAATTACGAGCAGGCAGCTGAATTGTGCAATAAGT
TTTTTGCTAAAAATGAGAAGTCTATTGATAATATTAAGGTTATTAGACTG
TTTGCGCTGATTGAATATCATCAATCTAATTTTAAATTGGCTATCGATAA
TTTTTTGTTATTAGAACAATTTTCGGTATCGATATCAGCTGATTATGAAA
AATGTTCTGAGTCTTATTATAACTTAGGTATGTACGAAAAAGCATTGCTA
ACATCTGTAAAAATTGAAAATTCAAAAACCAAAGAAGATATG
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