mRNA_M-pyrifera_M_contig6833.16444.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6833.16444.1
Unique NamemRNA_M-pyrifera_M_contig6833.16444.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6833.16444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6833contigM-pyrifera_M_contig6833:9952..10730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size779
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.504508-CDS-M-pyrifera_M_contig6833:9951..104101622816574.504508-CDS-M-pyrifera_M_contig6833:9951..10410Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6833 9952..10410 +
1692278055.251858-CDS-M-pyrifera_M_contig6833:9951..104101692278055.251858-CDS-M-pyrifera_M_contig6833:9951..10410Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6833 9952..10410 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.5225816-UTR-M-pyrifera_M_contig6833:10410..107301622816574.5225816-UTR-M-pyrifera_M_contig6833:10410..10730Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6833 10411..10730 +
1692278055.2695742-UTR-M-pyrifera_M_contig6833:10410..107301692278055.2695742-UTR-M-pyrifera_M_contig6833:10410..10730Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6833 10411..10730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6833.16444.1prot_M-pyrifera_M_contig6833.16444.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6833 9952..10410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6833.16444.1

>prot_M-pyrifera_M_contig6833.16444.1 ID=prot_M-pyrifera_M_contig6833.16444.1|Name=mRNA_M-pyrifera_M_contig6833.16444.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
LQITGYHINHGSLLSFYQVYIRILWASSLRTSRNIIPDILLTPGTQHIGV
RLSHQASQILEIVSSACIKQPTYSKWPTRVNQINEKKRPSSLDQTGAHTT
HNILTAPAPNARICFSDKTREPSHVQATKLSLPPQITRQPQSPPIPSPCL
ST*
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mRNA from alignment at M-pyrifera_M_contig6833:9952..10730+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6833.16444.1 ID=mRNA_M-pyrifera_M_contig6833.16444.1|Name=mRNA_M-pyrifera_M_contig6833.16444.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=779bp|location=Sequence derived from alignment at M-pyrifera_M_contig6833:9952..10730+ (Macrocystis pyrifera P11B4 male)
CTACAAATCACAGGGTATCATATAAATCATGGATCATTACTCTCGTTCTA
CCAGGTATATATCCGGATATTGTGGGCATCATCCCTACGCACATCACGTA
ATATAATACCAGATATACTATTAACACCAGGTACCCAGCATATAGGCGTA
CGGTTGTCACACCAAGCATCACAAATACTCGAGATTGTCAGCTCTGCATG
TATCAAACAACCCACGTACAGTAAGTGGCCGACGAGAGTCAACCAAATAA
ACGAAAAAAAACGACCTTCTAGTCTAGACCAAACGGGTGCTCATACAACA
CACAACATCTTGACGGCACCCGCACCAAACGCACGCATTTGTTTCTCGGA
CAAGACAAGAGAGCCATCGCACGTGCAGGCAACTAAGCTCTCGCTGCCGC
CGCAAATAACCCGCCAGCCTCAGTCACCGCCCATCCCCTCTCCTTGCCTA
TCCACCTAGTCTAATACAGGAGGGAGGTGTGTCCATTATATCTACGCAAA
TACCGGTGCCTGGTACCCATCCCAAGGGTTATACACCACACAGCTGCAGA
AGTACTACAACAGTAGAGCGAAACTTTGTGCGCTTCATGTATGCCACGTA
CGTACACGTCGAAGTTCCGAGCCCTGCCGTGAGAAGGGCGAAGACAAGTC
TACCGGTAGTCTCGTCCAGGTTGGTTGCGCCGTGAGCAATAAAAGCAACT
CTTTAGCGAGTACTCACGACCCGTGCGCGTGTACCCTTTTCGATTCCAGT
GCAAGCCTGTGGCGTCCCCACGGCCGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6833:9952..10730+

>mRNA_M-pyrifera_M_contig6833.16444.1 ID=mRNA_M-pyrifera_M_contig6833.16444.1|Name=mRNA_M-pyrifera_M_contig6833.16444.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig6833:9952..10730+ (Macrocystis pyrifera P11B4 male)
CTACAAATCACAGGGTATCATATAAATCATGGATCATTACTCTCGTTCTA
CCAGGTATATATCCGGATATTGTGGGCATCATCCCTACGCACATCACGTA
ATATAATACCAGATATACTATTAACACCAGGTACCCAGCATATAGGCGTA
CGGTTGTCACACCAAGCATCACAAATACTCGAGATTGTCAGCTCTGCATG
TATCAAACAACCCACGTACAGTAAGTGGCCGACGAGAGTCAACCAAATAA
ACGAAAAAAAACGACCTTCTAGTCTAGACCAAACGGGTGCTCATACAACA
CACAACATCTTGACGGCACCCGCACCAAACGCACGCATTTGTTTCTCGGA
CAAGACAAGAGAGCCATCGCACGTGCAGGCAACTAAGCTCTCGCTGCCGC
CGCAAATAACCCGCCAGCCTCAGTCACCGCCCATCCCCTCTCCTTGCCTA
TCCACCTAGCTACAAATCACAGGGTATCATATAAATCATGGATCATTACT
CTCGTTCTACCAGGTATATATCCGGATATTGTGGGCATCATCCCTACGCA
CATCACGTAATATAATACCAGATATACTATTAACACCAGGTACCCAGCAT
ATAGGCGTACGGTTGTCACACCAAGCATCACAAATACTCGAGATTGTCAG
CTCTGCATGTATCAAACAACCCACGTACAGTAAGTGGCCGACGAGAGTCA
ACCAAATAAACGAAAAAAAACGACCTTCTAGTCTAGACCAAACGGGTGCT
CATACAACACACAACATCTTGACGGCACCCGCACCAAACGCACGCATTTG
TTTCTCGGACAAGACAAGAGAGCCATCGCACGTGCAGGCAACTAAGCTCT
CGCTGCCGCCGCAAATAACCCGCCAGCCTCAGTCACCGCCCATCCCCTCT
CCTTGCCTATCCACCTAG
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