mRNA_M-pyrifera_M_contig6833.16442.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6833.16442.1
Unique NamemRNA_M-pyrifera_M_contig6833.16442.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6833.16442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6833contigM-pyrifera_M_contig6833:806..1358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size553
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6833.16442.1prot_M-pyrifera_M_contig6833.16442.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6833 961..1323 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.442742-UTR-M-pyrifera_M_contig6833:805..9601622816574.442742-UTR-M-pyrifera_M_contig6833:805..960Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6833 806..960 +
1692278055.2115877-UTR-M-pyrifera_M_contig6833:805..9601692278055.2115877-UTR-M-pyrifera_M_contig6833:805..960Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6833 806..960 +
1622816574.4707444-UTR-M-pyrifera_M_contig6833:1323..13581622816574.4707444-UTR-M-pyrifera_M_contig6833:1323..1358Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6833 1324..1358 +
1692278055.2330499-UTR-M-pyrifera_M_contig6833:1323..13581692278055.2330499-UTR-M-pyrifera_M_contig6833:1323..1358Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6833 1324..1358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.4597757-CDS-M-pyrifera_M_contig6833:960..13231622816574.4597757-CDS-M-pyrifera_M_contig6833:960..1323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6833 961..1323 +
1692278055.2221117-CDS-M-pyrifera_M_contig6833:960..13231692278055.2221117-CDS-M-pyrifera_M_contig6833:960..1323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6833 961..1323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6833.16442.1

>prot_M-pyrifera_M_contig6833.16442.1 ID=prot_M-pyrifera_M_contig6833.16442.1|Name=mRNA_M-pyrifera_M_contig6833.16442.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MRSAIIIEHHRACIECAETTHGDILDKKKSENSLRTPSFLPSFLPSLFPS
FPLSFRSLSHLLSSLFPGGRTSNLAHKQILLFKVFPSLLSTSLSTKNRPR
TPSTLPTNKSCSSKFSHIFL*
back to top

mRNA from alignment at M-pyrifera_M_contig6833:806..1358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6833.16442.1 ID=mRNA_M-pyrifera_M_contig6833.16442.1|Name=mRNA_M-pyrifera_M_contig6833.16442.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=553bp|location=Sequence derived from alignment at M-pyrifera_M_contig6833:806..1358+ (Macrocystis pyrifera P11B4 male)
TTTTGGGGGAAAAAAAAAGTTTTTCTTGTTTTCTTCTTGAAACCACGACA
AGCGCATGGAGGTGGCTCCGAGCAGGGACCGCAAAAAAATACGCGCGGTC
AAAACCGACCGACCGACCAAACACGCACACACAAAAGCAGACAAGACGAT
CGCGCATGAGATCTGCCATCATCATCGAGCATCATCGTGCATGTATCGAA
TGTGCCGAAACAACACACGGCGACATCCTTGACAAAAAAAAGAGCGAAAA
CTCGCTTCGTACTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCCTCTTTC
CTTCTTTCCCTCTTTCCTTCCGTTCTCTCTCACACCTTTTGTCCTCTCTC
TTTCCTGGCGGCCGGACGAGCAACCTTGCCCACAAACAAATCCTGCTCTT
CAAAGTTTTCCCTTCTCTTCTTTCAACTTCTCTCTCCACCAAAAACCGCC
CAAGAACCCCCTCAACCTTGCCCACAAACAAATCCTGCTCTTCAAAGTTT
TCCCATATTTTCTTGTAACTTCTCTCTCCACCAAAAACCGCCCAAGAACC
CCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig6833:806..1358+

>mRNA_M-pyrifera_M_contig6833.16442.1 ID=mRNA_M-pyrifera_M_contig6833.16442.1|Name=mRNA_M-pyrifera_M_contig6833.16442.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig6833:806..1358+ (Macrocystis pyrifera P11B4 male)
ATGAGATCTGCCATCATCATCGAGCATCATCGTGCATGTATCGAATGTGC
CGAAACAACACACGGCGACATCCTTGACAAAAAAAAGAGCGAAAACTCGC
TTCGTACTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCCTCTTTCCTTCT
TTCCCTCTTTCCTTCCGTTCTCTCTCACACCTTTTGTCCTCTCTCTTTCC
TGGCGGCCGGACGAGCAACCTTGCCCACAAACAAATCCTGCTCTTCAAAG
TTTTCCCTTCTCTTCTTTCAACTTCTCTCTCCACCAAAAACCGCCCAAGA
ACCCCCTCAACCTTGCCCACAAACAAATCCTGCTCTTCAAAGTTTTCCCA
TATTTTCTTGTAAATGAGATCTGCCATCATCATCGAGCATCATCGTGCAT
GTATCGAATGTGCCGAAACAACACACGGCGACATCCTTGACAAAAAAAAG
AGCGAAAACTCGCTTCGTACTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CCTCTTTCCTTCTTTCCCTCTTTCCTTCCGTTCTCTCTCACACCTTTTGT
CCTCTCTCTTTCCTGGCGGCCGGACGAGCAACCTTGCCCACAAACAAATC
CTGCTCTTCAAAGTTTTCCCTTCTCTTCTTTCAACTTCTCTCTCCACCAA
AAACCGCCCAAGAACCCCCTCAACCTTGCCCACAAACAAATCCTGCTCTT
CAAAGTTTTCCCATATTTTCTTGTAA
back to top