mRNA_M-pyrifera_M_contig6811.16415.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6811.16415.1
Unique NamemRNA_M-pyrifera_M_contig6811.16415.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig6811.16415.1 vs. uniprot
Match: D8LKP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP5_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 3.970e-45
Identity = 80/89 (89.89%), Postives = 82/89 (92.13%), Query Frame = 2 
Query:    2 GIGDRHLENFLLDTTTGTVVGIDFGAAFGFGSSELPVPELIPFRLTNQFQNLLQPLDSVGLLKGHMVSTLQALRGGWEVLLATMDVFLN 268
            GIGDRHL+NFLLDT TGTVVGIDFGAAFG   +EL VPELIPFRLTNQFQNLLQPLDSVGLLKGHMVSTLQALR G EVLLATMDVFLN
Sbjct:  185 GIGDRHLDNFLLDTMTGTVVGIDFGAAFGIAHTELGVPELIPFRLTNQFQNLLQPLDSVGLLKGHMVSTLQALRAGREVLLATMDVFLN 273
[Close]
BLAST of mRNA_M-pyrifera_M_contig6811.16415.1 vs. uniprot
Match: A0A836CRJ1_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRJ1_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.950e-32
Identity = 61/89 (68.54%), Postives = 70/89 (78.65%), Query Frame = 2 
Query:    2 GIGDRHLENFLLDTTTGTVVGIDFGAAFGFGSSELPVPELIPFRLTNQFQNLLQPLDSVGLLKGHMVSTLQALRGGWEVLLATMDVFLN 268
            GIGDRHL+NFLLD TTG VVGIDFGAAFGF +S LPVPELIPFRLT Q +  L PLD+VGL++ HM +  +ALR   E LL  MDVFL+
Sbjct:  138 GIGDRHLDNFLLDLTTGAVVGIDFGAAFGFATSHLPVPELIPFRLTRQLRGALAPLDAVGLMRDHMCAAARALRAAGEGLLNAMDVFLH 226
[Close]
BLAST of mRNA_M-pyrifera_M_contig6811.16415.1 vs. uniprot
Match: W7TGX1_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGX1_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.000e-28
Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = 2 
Query:    2 GIGDRHLENFLLDTTTGTVVGIDFGAAFGFGSSELPVPELIPFRLTNQFQNLLQPLDSVGLLKGHMVSTLQALRGGWEVLLATMDVFLN 268
            G+GDRHLENFLLDT +  VVGIDFG AFG G+S LPVPELIPFRLT Q  N+L+PLDS GLL+  M   L ALR G ++LL TM++F+ 
Sbjct: 1168 GVGDRHLENFLLDTRSACVVGIDFGVAFGIGASALPVPELIPFRLTRQMLNVLRPLDSEGLLQIAMQKVLHALRRGEDLLLPTMELFVR 1256
[Close]
BLAST of mRNA_M-pyrifera_M_contig6811.16415.1 vs. uniprot
Match: A0A4D9D184_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D184_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.030e-28
Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = 2 
Query:    2 GIGDRHLENFLLDTTTGTVVGIDFGAAFGFGSSELPVPELIPFRLTNQFQNLLQPLDSVGLLKGHMVSTLQALRGGWEVLLATMDVFLN 268
            G+GDRHLENFLLDT +  VVGIDFG AFG G+S LPVPELIPFRLT Q  N+L+PLDS GLL+  M   L ALR G ++LL TM++F+ 
Sbjct: 5046 GVGDRHLENFLLDTRSACVVGIDFGVAFGIGASALPVPELIPFRLTRQMLNVLRPLDSEGLLQIAMQKVLHALRRGEDLLLPTMELFVR 5134
[Close]
BLAST of mRNA_M-pyrifera_M_contig6811.16415.1 vs. uniprot
Match: A0A6B2L2W0_9EUKA (Non-specific serine/threonine protein kinase n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L2W0_9EUKA)

HSP 1 Score: 113 bits (282), Expect = 1.500e-27
Identity = 55/89 (61.80%), Postives = 69/89 (77.53%), Query Frame = 2 
Query:    2 GIGDRHLENFLLDTTTGTVVGIDFGAAFGFGSSELPVPELIPFRLTNQFQNLLQPLDSVGLLKGHMVSTLQALRGGWEVLLATMDVFLN 268
            GIGDRHL+NFLL+ T G+++GIDFG AFG  +  LP+PEL+PFRLT QF N L PLDS GLLK +MV +L AL+   ++LL TMDVF+ 
Sbjct:  275 GIGDRHLDNFLLNYTNGSLIGIDFGHAFGTATQFLPIPELMPFRLTRQFTNFLLPLDSEGLLKHNMVYSLDALQKNQDILLNTMDVFVK 363
[Close]
BLAST of mRNA_M-pyrifera_M_contig6811.16415.1 vs. uniprot
Match: A0A7S2G9H0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G9H0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.980e-27
Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 2 
Query:    2 GIGDRHLENFLLDTTTGTVVGIDFGAAFGFGSSELPVPELIPFRLTNQFQNLLQPLDSVGLLKGHMVSTLQALRGGWEVLLATMDVFLN 268
            GIGDRHL+NFL+D T+G VV IDFG AFG G++ LPVPEL+PFRLT Q   +L+PL++ GL + H   TL+AL      ++ TMDVFLN
Sbjct:   33 GIGDRHLDNFLVDVTSGAVVPIDFGMAFGMGTAVLPVPELLPFRLTPQLLGVLRPLNTKGLFEHHATMTLKALVKSRYDIMRTMDVFLN 121
[Close]
BLAST of mRNA_M-pyrifera_M_contig6811.16415.1 vs. uniprot
Match: A0A7S3UTP8_HETAK (Non-specific serine/threonine protein kinase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTP8_HETAK)

HSP 1 Score: 112 bits (279), Expect = 5.540e-27
Identity = 53/89 (59.55%), Postives = 68/89 (76.40%), Query Frame = 2 
Query:    2 GIGDRHLENFLLDTTTGTVVGIDFGAAFGFGSSELPVPELIPFRLTNQFQNLLQPLDSVGLLKGHMVSTLQALRGGWEVLLATMDVFLN 268
            GIGDRHL+NFLLD T+G ++GIDFG AFG G+S LPVPEL+PFRL+      L+PLD+ GLL  HM+  + ALR G + L +T+DVFL+
Sbjct:  308 GIGDRHLDNFLLDLTSGQLIGIDFGYAFGIGASHLPVPELLPFRLSPNLLGPLRPLDARGLLVAHMIHAMAALREGADTLTSTLDVFLH 396
[Close]
BLAST of mRNA_M-pyrifera_M_contig6811.16415.1 vs. uniprot
Match: A7SPT8_NEMVE (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SPT8_NEMVE)

HSP 1 Score: 110 bits (276), Expect = 2.130e-26
Identity = 53/89 (59.55%), Postives = 66/89 (74.16%), Query Frame = 2 
Query:    2 GIGDRHLENFLLDTTTGTVVGIDFGAAFGFGSSELPVPELIPFRLTNQFQNLLQPLDSVGLLKGHMVSTLQALRGGWEVLLATMDVFLN 268
            GIGDRHL NFL+D  TG ++GIDFG +FG  +  LPVPEL+PFRLT QF NLL PL   GL++  M+  ++ALRG  E+LL TMDVF+ 
Sbjct: 1652 GIGDRHLSNFLVDMRTGGLIGIDFGHSFGSATQFLPVPELVPFRLTRQFTNLLLPLKESGLVRNTMIHVMRALRGNHELLLNTMDVFVK 1740
[Close]
BLAST of mRNA_M-pyrifera_M_contig6811.16415.1 vs. uniprot
Match: A0A2P6MVV9_9EUKA (DNA-dependent protein kinase catalytic subunit n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MVV9_9EUKA)

HSP 1 Score: 110 bits (276), Expect = 2.150e-26
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 2 
Query:    2 GIGDRHLENFLLDTTTGTVVGIDFGAAFGFGSSELPVPELIPFRLTNQFQNLLQPLDSVGLLKGHMVSTLQALRGGWEVLLATMDVFLN 268
            GIGDRHLENFL   T G+++GIDFG AFG  +  LP+PEL+PFRLT QF  LL PLD+ G LK +M  TL+AL+ G E LL TMDVF+ 
Sbjct: 3799 GIGDRHLENFLFSFTDGSLIGIDFGHAFGTATQFLPIPELMPFRLTRQFIGLLSPLDADGFLKFNMTYTLEALQNGKEKLLNTMDVFIR 3887
[Close]
BLAST of mRNA_M-pyrifera_M_contig6811.16415.1 vs. uniprot
Match: UPI0013902A4B (DNA-dependent protein kinase catalytic subunit isoform X1 n=3 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013902A4B)

HSP 1 Score: 110 bits (276), Expect = 2.150e-26
Identity = 53/89 (59.55%), Postives = 66/89 (74.16%), Query Frame = 2 
Query:    2 GIGDRHLENFLLDTTTGTVVGIDFGAAFGFGSSELPVPELIPFRLTNQFQNLLQPLDSVGLLKGHMVSTLQALRGGWEVLLATMDVFLN 268
            GIGDRHL NFL+D  TG ++GIDFG +FG  +  LPVPEL+PFRLT QF NLL PL   GL++  M+  ++ALRG  E+LL TMDVF+ 
Sbjct: 3929 GIGDRHLSNFLVDMRTGGLIGIDFGHSFGSATQFLPVPELVPFRLTRQFTNLLLPLKESGLVRNTMIHVMRALRGNHELLLNTMDVFVK 4017
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6811.16415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKP5_ECTSI3.970e-4589.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CRJ1_9STRA1.950e-3268.54Non-specific serine/threonine protein kinase n=1 T... [more]
W7TGX1_9STRA2.000e-2865.17Non-specific serine/threonine protein kinase n=1 T... [more]
A0A4D9D184_9STRA2.030e-2865.17Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6B2L2W0_9EUKA1.500e-2761.80Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S2G9H0_9STRA3.980e-2758.43Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3UTP8_HETAK5.540e-2759.55Non-specific serine/threonine protein kinase n=1 T... [more]
A7SPT8_NEMVE2.130e-2659.55Non-specific serine/threonine protein kinase (Frag... [more]
A0A2P6MVV9_9EUKA2.150e-2661.80DNA-dependent protein kinase catalytic subunit n=1... [more]
UPI0013902A4B2.150e-2659.55DNA-dependent protein kinase catalytic subunit iso... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6811contigM-pyrifera_M_contig6811:10443..12557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size271
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6811.16415.1prot_M-pyrifera_M_contig6811.16415.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6811 10444..12557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.1090913-CDS-M-pyrifera_M_contig6811:10443..105211622816572.1090913-CDS-M-pyrifera_M_contig6811:10443..10521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6811 10444..10521 -
1692278053.904076-CDS-M-pyrifera_M_contig6811:10443..105211692278053.904076-CDS-M-pyrifera_M_contig6811:10443..10521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6811 10444..10521 -
1622816572.1198027-CDS-M-pyrifera_M_contig6811:11349..114901622816572.1198027-CDS-M-pyrifera_M_contig6811:11349..11490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6811 11350..11490 -
1692278053.9137042-CDS-M-pyrifera_M_contig6811:11349..114901692278053.9137042-CDS-M-pyrifera_M_contig6811:11349..11490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6811 11350..11490 -
1622816572.1333456-CDS-M-pyrifera_M_contig6811:12506..125571622816572.1333456-CDS-M-pyrifera_M_contig6811:12506..12557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6811 12507..12557 -
1692278053.9230027-CDS-M-pyrifera_M_contig6811:12506..125571692278053.9230027-CDS-M-pyrifera_M_contig6811:12506..12557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6811 12507..12557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6811.16415.1

>prot_M-pyrifera_M_contig6811.16415.1 ID=prot_M-pyrifera_M_contig6811.16415.1|Name=mRNA_M-pyrifera_M_contig6811.16415.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
RDRRPALGELPAGHDDRDCRGDRLWSGVRVRLVGASRSRTDPLPPDKPVS
EPAAASGQRGTAEGAYGVDAASPPRRVGGSASNDGRVFER
back to top

mRNA from alignment at M-pyrifera_M_contig6811:10443..12557-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6811.16415.1 ID=mRNA_M-pyrifera_M_contig6811.16415.1|Name=mRNA_M-pyrifera_M_contig6811.16415.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2115bp|location=Sequence derived from alignment at M-pyrifera_M_contig6811:10443..12557- (Macrocystis pyrifera P11B4 male)
CGGGATCGGCGACCGGCACTTGGAGAACTTCCTGCTGGACACGACGACAG
GGTGAGGTCGCGGTGTGGTTGGGGTTTACAACAAAAAAATCGGTCAAAAT
AGATGACGATATATCTATCTGTAGATCAGATATATCATCTAGGCCCTAAC
CTGCCGTTGTGCGGTGGTTGTGCAGAGGATCTGTATAGAACACAGGAGGC
GTGTCCTACGAGATGATGCAGGCTGTACGACTCCCACCGCGGCACCTCGG
CAACATGAACTACAGTAGATGTTACAGATAAGAGATGTATCTGCCCTGAA
AGATCTAGCCATGATCTATCTGTAGACGATCGGTATATCCAAGGCACGTT
GCTCACTGACGGAGGGAGCTCCTCGACGGAGAAGCTACCGAATCATTCCG
TACCCCATGTACCTAGTATACTTGAAAACGTTTTCGTTGGATATTAGACC
ATGGGATGGGGCATTGCGGTTTAAGCTACATGTGTTTTCTCAAAGTGGAT
CGTTGGGTGAGGTCTAATAGACCTTTCCCTGGAGTGAGGAGCCTCGTGTT
GTTTAGGTGCTCTACTTCTTCCGTAAGACGGGTTGTAAGCGAGAGCTTGT
TTCCCTCGCGTGACGCTGTTTTTGTTGTTGTCACGAATGGTGGTGGTGGT
GCTTATGATGGTAGTGGTTATAGTGACGATGGTGGCGATGGTAGTCGTGG
TTGTGGTTGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGCCGCTTGGTA
TTGACATTCGTCCTGTTAGGGGTTATAAACAAGCGTGTTGGGTAGTTCCG
TCGCTACGAAAGAAGACGGTGATGGCGATTTTTTTGTGGTTTCGTGCGAT
TTTGAGACCCCCTGCATGGTTGGCGTATGTTCACACAGTCCAGGCTCCAG
GTTGTCCTGCCTTGTTCGTGGTTGCGCGGAATGATATGATCGCACTGCTC
AATCAAAGACGAATTCAGCAACCCGCGACATACCTTTGCAACCGAGCTAT
CGAATCAATCACTCGGTTGACGACCTCGACTTTTATTTTGACATCCGGCG
TGATTTTATCCAACCAGGACTGTCGTGGGGATCGACTTTGGAGCGGCGTT
CGGGTTCGGCTCGTCGGAGCTTCCCGTTCCAGAACTGATCCCCTTCCGCC
TGACAAACCAGTTTCAGAACCTGCTGCAGCCTCTGGACAGCGTGGGACTG
CTGAAGGGGTGAGGACCCCCATGCTTGCCTTATAGGGCTAGCGTCTAACT
TTTCTGAGGCTCCTCACTCGAGGAGCTCTCTACCTCACCGAGCAATCAAG
TTTTGATGAGAACCGCAAATATACTCAATCTTGTACAACAAGCAAGCCCT
TTTGTTTTGTTTTTTGCTTCTCTCCTTTACGTATCTGTTTCGATTTGTTT
TCGTTTTCTCTCATAGAATATGTATGTCGTGCCTGCCATATCCAGAACCT
GGTATGGTGACATAACATTGCATTGTGTACTGTCGTGCTTATACCTACGT
AACAATGTAGTATCTCTGTGGCGTATTTTTGTGACCACAGAACATGTATC
TCTCTAGGATTGAAGAATCAGCACGGACACTGGTTGTGCTGGATGTCGAC
GGTTAGAAAGAACGGTTTAATGTGAAGAACACACACGTTGGCCATTTATT
TGTCCAACAATTTTTGCTCTAGACGCGAGTGCACATCAGACATAAAAAAA
ATGTGGGTCCACATGATACCTCCTGGGTTTCTGAGGAGATCGTAAATGTT
TTGGGCTCGAAAGGGCAACCTCCCTATCGTATAGCCTGCTTCTGAAGGTT
TTGCAATCGTACCTTCTGGTCCTGTGTGACTGTCGGTCCCCATCCACCCA
TGGAATCCTGCACAAATGTTGCTCTCTTTACAGAGCTTTGGTCTCGTCGA
TACACGCGAGGAAAAGTCTTAGACCACGTATTTTCCTCAGTCCCAGAAAC
GCCTTTTTTTCACCGTCTTACGGCCTCACTGTCCCTTTCAAATAATGGGT
ACGAGCTGTTTCCCCTACCTCCGCGTTTGCGAATAGGCATATGGTGTCGA
CGCTGCAAGCCCTCCGAGGCGGGTGGGAGGTTCTGCTAGCAACGATGGAC
GTGTTTTTGAACGAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig6811:10443..12557-

>mRNA_M-pyrifera_M_contig6811.16415.1 ID=mRNA_M-pyrifera_M_contig6811.16415.1|Name=mRNA_M-pyrifera_M_contig6811.16415.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig6811:10443..12557- (Macrocystis pyrifera P11B4 male)
CGGGATCGGCGACCGGCACTTGGAGAACTTCCTGCTGGACACGACGACAG
GCGGGATCGGCGACCGGCACTTGGAGAACTTCCTGCTGGACACGACGACA
GGGACTGTCGTGGGGATCGACTTTGGAGCGGCGTTCGGGTTCGGCTCGTC
GGAGCTTCCCGTTCCAGAACTGATCCCCTTCCGCCTGACAAACCAGTTTC
AGAACCTGCTGCAGCCTCTGGACAGCGTGGGACTGCTGAAGGGGACTGTC
GTGGGGATCGACTTTGGAGCGGCGTTCGGGTTCGGCTCGTCGGAGCTTCC
CGTTCCAGAACTGATCCCCTTCCGCCTGACAAACCAGTTTCAGAACCTGC
TGCAGCCTCTGGACAGCGTGGGACTGCTGAAGGGGCATATGGTGTCGACG
CTGCAAGCCCTCCGAGGCGGGTGGGAGGTTCTGCTAGCAACGATGGACGT
GTTTTTGAACGAGCATATGGTGTCGACGCTGCAAGCCCTCCGAGGCGGGT
GGGAGGTTCTGCTAGCAACGATGGACGTGTTTTTGAACGA
back to top