mRNA_M-pyrifera_M_contig67938.16392.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67938.16392.1
Unique NamemRNA_M-pyrifera_M_contig67938.16392.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67938.16392.1 vs. uniprot
Match: A0A0Q3Q473_AMAAE (Acyl-CoA-binding protein n=2 Tax=Amazona TaxID=12929 RepID=A0A0Q3Q473_AMAAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.890e-21
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 VLQVYALYKQATLGDVNTERPGGFFDWEAQAKWDAWNALKGTSKEDAMKAYIEEVEAQKAEF 186
            +L VY+LYKQAT+GDVNT+RPG   D++ +AKWDAWNALKG SKEDAMKAYI +VE  K+++
Sbjct:   25 MLDVYSLYKQATVGDVNTDRPG-MLDFKGKAKWDAWNALKGMSKEDAMKAYIAKVEELKSKY 85
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BLAST of mRNA_M-pyrifera_M_contig67938.16392.1 vs. uniprot
Match: A0A2Y9QM90_TRIMA (acyl-CoA-binding protein n=1 Tax=Trichechus manatus latirostris TaxID=127582 RepID=A0A2Y9QM90_TRIMA)

HSP 1 Score: 85.9 bits (211), Expect = 8.170e-21
Identity = 40/62 (64.52%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 VLQVYALYKQATLGDVNTERPGGFFDWEAQAKWDAWNALKGTSKEDAMKAYIEEVEAQKAEF 186
            +L +Y+ YKQAT+GD+NTERPG   D++ +AKWDAWN LKGTSKEDAMKAYI++VE  K ++
Sbjct:    1 MLFIYSRYKQATVGDINTERPG-MLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELKKKY 61
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BLAST of mRNA_M-pyrifera_M_contig67938.16392.1 vs. uniprot
Match: A0A8B9GK91_9PSIT (ACB domain-containing protein n=3 Tax=Neognathae TaxID=8825 RepID=A0A8B9GK91_9PSIT)

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-20
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 VLQVYALYKQATLGDVNTERPGGFFDWEAQAKWDAWNALKGTSKEDAMKAYIEEVEAQKAEF 186
            +L VY+LYKQAT+GDVNT+RPG   D++ +AKWDAWNALKG SKEDAMKAYI +VE  K+++
Sbjct:   91 MLDVYSLYKQATVGDVNTDRPG-MLDFKGKAKWDAWNALKGMSKEDAMKAYIAKVEELKSKY 151
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BLAST of mRNA_M-pyrifera_M_contig67938.16392.1 vs. uniprot
Match: UPI000529A397 (acyl-CoA-binding protein n=1 Tax=Colius striatus TaxID=57412 RepID=UPI000529A397)

HSP 1 Score: 85.5 bits (210), Expect = 1.160e-20
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 VLQVYALYKQATLGDVNTERPGGFFDWEAQAKWDAWNALKGTSKEDAMKAYIEEVEAQKAEF 186
            +L VY+ YKQAT+GDVNT+RPG   D++ +AKWDAW+ALKGTSKEDAMKAYI +VE  K ++
Sbjct:    1 MLDVYSHYKQATVGDVNTDRPG-MLDFKGKAKWDAWSALKGTSKEDAMKAYIAKVEELKGKY 61
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BLAST of mRNA_M-pyrifera_M_contig67938.16392.1 vs. uniprot
Match: L5LHM2_MYODS (Acyl-CoA-binding protein n=4 Tax=Eutheria TaxID=9347 RepID=L5LHM2_MYODS)

HSP 1 Score: 85.9 bits (211), Expect = 1.550e-20
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 VLQVYALYKQATLGDVNTERPGGFFDWEAQAKWDAWNALKGTSKEDAMKAYIEEVEAQKAEF 186
            +L +Y+ YKQAT+GDVNTERPG   D + +AKWDAWNALKGTSKEDAMKAY+ +VE  K ++
Sbjct:   25 MLFIYSRYKQATVGDVNTERPG-MLDLKGKAKWDAWNALKGTSKEDAMKAYVNKVEELKKKY 85
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BLAST of mRNA_M-pyrifera_M_contig67938.16392.1 vs. uniprot
Match: A0A7J7XTZ2_PIPKU (Diazepam binding inhibitor, acyl-CoA binding protein n=1 Tax=Pipistrellus kuhlii TaxID=59472 RepID=A0A7J7XTZ2_PIPKU)

HSP 1 Score: 86.3 bits (212), Expect = 2.150e-20
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 VLQVYALYKQATLGDVNTERPGGFFDWEAQAKWDAWNALKGTSKEDAMKAYIEEVEAQKAEF 186
            +L +Y+ YKQAT+GDVNTERPG   D + +AKWDAWNALKGTSKEDAMKAY+ +VE  K ++
Sbjct:   50 MLFIYSRYKQATVGDVNTERPG-MLDLKGKAKWDAWNALKGTSKEDAMKAYVNKVEELKTKY 110
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BLAST of mRNA_M-pyrifera_M_contig67938.16392.1 vs. uniprot
Match: ACBP_BOVIN (Acyl-CoA-binding protein n=12 Tax=Eutheria TaxID=9347 RepID=ACBP_BOVIN)

HSP 1 Score: 85.5 bits (210), Expect = 2.200e-20
Identity = 40/62 (64.52%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 VLQVYALYKQATLGDVNTERPGGFFDWEAQAKWDAWNALKGTSKEDAMKAYIEEVEAQKAEF 186
            +L +Y+ YKQAT+GD+NTERPG   D++ +AKWDAWN LKGTSKEDAMKAYI++VE  K ++
Sbjct:   25 MLFIYSHYKQATVGDINTERPG-MLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELKKKY 85
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BLAST of mRNA_M-pyrifera_M_contig67938.16392.1 vs. uniprot
Match: A0A452EQX6_CAPHI (Diazepam binding inhibitor, acyl-CoA binding protein n=5 Tax=Eutheria TaxID=9347 RepID=A0A452EQX6_CAPHI)

HSP 1 Score: 85.5 bits (210), Expect = 2.200e-20
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 VLQVYALYKQATLGDVNTERPGGFFDWEAQAKWDAWNALKGTSKEDAMKAYIEEVEAQKAEF 186
            +L +Y+ YKQAT+GD+NTERPG   D++ +AKWDAWN LKGTSKEDAMKAY+++VE  K ++
Sbjct:   25 MLFIYSRYKQATVGDINTERPG-MLDFKGKAKWDAWNELKGTSKEDAMKAYVDKVEELKKKY 85
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BLAST of mRNA_M-pyrifera_M_contig67938.16392.1 vs. uniprot
Match: UPI0003EADDCA (acyl-CoA-binding protein n=1 Tax=Lepisosteus oculatus TaxID=7918 RepID=UPI0003EADDCA)

HSP 1 Score: 85.5 bits (210), Expect = 2.200e-20
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 VLQVYALYKQATLGDVNTERPGGFFDWEAQAKWDAWNALKGTSKEDAMKAYIEEVEAQKAEF 186
            VL++Y LYKQAT+GDVNT+RPG   D+  +AKWDAW+A KG SKEDAMK YIE+VE  KA++
Sbjct:   25 VLEIYGLYKQATVGDVNTQRPG-MLDFTGKAKWDAWDANKGMSKEDAMKKYIEKVEELKAKY 85
[Close]
BLAST of mRNA_M-pyrifera_M_contig67938.16392.1 vs. uniprot
Match: UPI0004BD7577 (acyl-CoA-binding protein isoform X1 n=1 Tax=Equus przewalskii TaxID=9798 RepID=UPI0004BD7577)

HSP 1 Score: 85.5 bits (210), Expect = 2.810e-20
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 VLQVYALYKQATLGDVNTERPGGFFDWEAQAKWDAWNALKGTSKEDAMKAYIEEVEAQKAEF 186
            +L +Y+ YKQAT+GDVNTERPG   D + +AKWDAWNALKGTSKEDAMKAYI +VE  K ++
Sbjct:   34 MLFIYSHYKQATVGDVNTERPG-MLDLKGKAKWDAWNALKGTSKEDAMKAYINKVEDLKKKY 94
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67938.16392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0Q3Q473_AMAAE1.890e-2167.74Acyl-CoA-binding protein n=2 Tax=Amazona TaxID=129... [more]
A0A2Y9QM90_TRIMA8.170e-2164.52acyl-CoA-binding protein n=1 Tax=Trichechus manatu... [more]
A0A8B9GK91_9PSIT1.100e-2067.74ACB domain-containing protein n=3 Tax=Neognathae T... [more]
UPI000529A3971.160e-2066.13acyl-CoA-binding protein n=1 Tax=Colius striatus T... [more]
L5LHM2_MYODS1.550e-2066.13Acyl-CoA-binding protein n=4 Tax=Eutheria TaxID=93... [more]
A0A7J7XTZ2_PIPKU2.150e-2066.13Diazepam binding inhibitor, acyl-CoA binding prote... [more]
ACBP_BOVIN2.200e-2064.52Acyl-CoA-binding protein n=12 Tax=Eutheria TaxID=9... [more]
A0A452EQX6_CAPHI2.200e-2062.90Diazepam binding inhibitor, acyl-CoA binding prote... [more]
UPI0003EADDCA2.200e-2066.13acyl-CoA-binding protein n=1 Tax=Lepisosteus ocula... [more]
UPI0004BD75772.810e-2067.74acyl-CoA-binding protein isoform X1 n=1 Tax=Equus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67938contigM-pyrifera_M_contig67938:856..1187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score87.4
Seed ortholog evalue2.7e-15
Seed eggNOG ortholog225400.XP_006769726.1
Preferred nameDBI
KEGG koko:K08762
KEGG Pathwayko03320,map03320
Hectar predicted targeting categoryother localisation
GOsGO:0000062,GO:0000166,GO:0001662,GO:0001942,GO:0002209,GO:0003008,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005794,GO:0005886,GO:0006139,GO:0006163,GO:0006629,GO:0006637,GO:0006638,GO:0006639,GO:0006641,GO:0006644,GO:0006650,GO:0006694,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0006952,GO:0007154,GO:0007204,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007584,GO:0007586,GO:0007589,GO:0007610,GO:0007611,GO:0008021,GO:0008150,GO:0008152,GO:0008202,GO:0008283,GO:0008544,GO:0008610,GO:0009058,GO:0009117,GO:0009150,GO:0009259,GO:0009605,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0009991,GO:0010522,GO:0010524,GO:0010565,GO:0010646,GO:0010647,GO:0010959,GO:0012505,GO:0014009,GO:0016020,GO:0017076,GO:0019216,GO:0019217,GO:0019222,GO:0019637,GO:0019693,GO:0019725,GO:0021537,GO:0021591,GO:0021670,GO:0022008,GO:0022404,GO:0022405,GO:0022600,GO:0023051,GO:0023056,GO:0030003,GO:0030133,GO:0030154,GO:0030156,GO:0030157,GO:0030554,GO:0030900,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031982,GO:0031998,GO:0031999,GO:0032228,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032941,GO:0033218,GO:0033555,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035383,GO:0036042,GO:0036094,GO:0036151,GO:0042063,GO:0042221,GO:0042303,GO:0042592,GO:0042596,GO:0042633,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043269,GO:0043270,GO:0043292,GO:0043588,GO:0043603,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0045202,GO:0045833,GO:0045834,GO:0045922,GO:0046320,GO:0046322,GO:0046470,GO:0046483,GO:0046486,GO:0046889,GO:0046890,GO:0046903,GO:0046983,GO:0048037,GO:0048167,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050662,GO:0050789,GO:0050794,GO:0050801,GO:0050804,GO:0050806,GO:0050877,GO:0050878,GO:0050890,GO:0050896,GO:0050994,GO:0050995,GO:0051049,GO:0051050,GO:0051179,GO:0051186,GO:0051234,GO:0051279,GO:0051281,GO:0051282,GO:0051480,GO:0051716,GO:0051924,GO:0051928,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055086,GO:0060291,GO:0060322,GO:0060341,GO:0060429,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0070382,GO:0070887,GO:0071496,GO:0071704,GO:0071944,GO:0072503,GO:0072507,GO:0072521,GO:0080090,GO:0097038,GO:0097159,GO:0097164,GO:0097367,GO:0097458,GO:0097708,GO:0098771,GO:0098773,GO:0098793,GO:0099080,GO:0099081,GO:0099177,GO:0099503,GO:0099512,GO:1901135,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901567,GO:1901576,GO:1901681,GO:1903169,GO:1904062,GO:1904064,GO:1904427
EggNOG free text desc.acyl-CoA-binding
EggNOG OGs3A885@33154,3BU5A@33208,3DAMM@33213,3JHEE@40674,48FBH@7711,49C6Y@7742,4M4WY@9397,COG4281@1,KOG0817@2759
Ec32 ortholog descriptionAcyl-CoA binding protein
Ec32 orthologEc-05_006740.1
COG Functional cat.I
Best tax levelChiroptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.753947-CDS-M-pyrifera_M_contig67938:855..9171622816570.753947-CDS-M-pyrifera_M_contig67938:855..917Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67938 856..917 +
1692278053.1018183-CDS-M-pyrifera_M_contig67938:855..9171692278053.1018183-CDS-M-pyrifera_M_contig67938:855..917Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67938 856..917 +
1622816570.7680047-CDS-M-pyrifera_M_contig67938:1051..11871622816570.7680047-CDS-M-pyrifera_M_contig67938:1051..1187Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67938 1052..1187 +
1692278053.1233037-CDS-M-pyrifera_M_contig67938:1051..11871692278053.1233037-CDS-M-pyrifera_M_contig67938:1051..1187Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67938 1052..1187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67938.16392.1prot_M-pyrifera_M_contig67938.16392.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67938 856..1187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67938.16392.1

>prot_M-pyrifera_M_contig67938.16392.1 ID=prot_M-pyrifera_M_contig67938.16392.1|Name=mRNA_M-pyrifera_M_contig67938.16392.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
VLQVYALYKQATLGDVNTERPGGFFDWEAQAKWDAWNALKGTSKEDAMKA
YIEEVEAQKAEFVDE*
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mRNA from alignment at M-pyrifera_M_contig67938:856..1187+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67938.16392.1 ID=mRNA_M-pyrifera_M_contig67938.16392.1|Name=mRNA_M-pyrifera_M_contig67938.16392.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=332bp|location=Sequence derived from alignment at M-pyrifera_M_contig67938:856..1187+ (Macrocystis pyrifera P11B4 male)
GTTTTGCAGGTTTATGCCTTGTACAAGCAAGCTACTTTGGGAGATGTGAA
CACTGAGAGACCGTAGGTGAAAAGGTTGAGGGGAAATGGAGAGGTGGGGG
TGAGGGAGAGATTGATACAATATTGCTGAGCGCTGGTTTGGGTGTTCCTG
TACGGGATTGAGGAGAGGAGATGATTTTGGTTCCTTTGATTTGCAGAGGA
GGTTTCTTTGATTGGGAAGCTCAAGCAAAATGGGACGCGTGGAACGCGCT
CAAAGGGACAAGCAAAGAAGATGCCATGAAAGCGTACATTGAAGAAGTTG
AAGCACAAAAGGCAGAGTTTGTGGATGAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67938:856..1187+

>mRNA_M-pyrifera_M_contig67938.16392.1 ID=mRNA_M-pyrifera_M_contig67938.16392.1|Name=mRNA_M-pyrifera_M_contig67938.16392.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig67938:856..1187+ (Macrocystis pyrifera P11B4 male)
GTTTTGCAGGTTTATGCCTTGTACAAGCAAGCTACTTTGGGAGATGTGAA
CACTGAGAGACCGTTTTGCAGGTTTATGCCTTGTACAAGCAAGCTACTTT
GGGAGATGTGAACACTGAGAGACCAGGAGGTTTCTTTGATTGGGAAGCTC
AAGCAAAATGGGACGCGTGGAACGCGCTCAAAGGGACAAGCAAAGAAGAT
GCCATGAAAGCGTACATTGAAGAAGTTGAAGCACAAAAGGCAGAGTTTGT
GGATGAGTAAAGGAGGTTTCTTTGATTGGGAAGCTCAAGCAAAATGGGAC
GCGTGGAACGCGCTCAAAGGGACAAGCAAAGAAGATGCCATGAAAGCGTA
CATTGAAGAAGTTGAAGCACAAAAGGCAGAGTTTGTGGATGAGTAA
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