mRNA_M-pyrifera_M_contig6759.16312.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig6759.16312.1 vs. uniprot
Match: A0A6H5KTV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV5_9PHAE) HSP 1 Score: 335 bits (860), Expect = 8.130e-104 Identity = 244/457 (53.39%), Postives = 279/457 (61.05%), Query Frame = 1
Query: 757 MAISLMMCSGPVIAPLLEAVFWGGRGGIGHGGGTVVGVPVHAVAFCGVVLGLYLLAVVSRHFPNSRTGRRSATALLLASMAALALQPALKDGSAVATDPSRGTGVGDSGGGGDYWREYLGQICGVAMAGMGVLALTGVASPTKTLTTRAAYASAIGAPLGAWSALAAMPLADPAAVAWSALGAVGTYSCAMMILLEAAHPR-ASVLSRSAMRSGREGGGKA-GRKRGAPAVAAGSVLLELYVAVAAIMPVAAVAQ-----------GVQLLVFGPVGRRLMGFP---------SRGGVSAEGAARFALATAATGHAVIAVALKFV----GGASSGGIXXXXXXXXXXXXXXRRGEGFGSAWMAGSSASRAASEARWIPVMGNASACLAAAGAFLCCWAHLPGEGARALAAVPCCALLLLLQEDGRLLRG-AGYVAAVPLGALSGAWAGSAAYYVLLK 2046
MA +L +CS PVI+PLL + GG + +V P H++AFCGV+L LY LAVVSRHFP+SR CGVA+AG+GVL LTG+ASPTKTL RAA+A A+ P+G WSALA+MP AD A V+WSALGA GTYSCA+M+LLEAA PR A+VLSR S GGG A GR R GSV++ELYVAV A MP A +AQ G+QLL+ GPVGR LMG S GG +A+GAARFALATAATGHAVIAVALK + GGA XXXXXXXXXXXX RR G A S SRA EARWIP MGNASA +A GAF CCW HLPGE ARAL A+PCCALLLLLQEDGRL RG G+ AAVP GALS WAGSA +Y++LK
Sbjct: 1 MASALYICSRPVISPLLRELLSGGSHVVSASASSVDS-PAHSLAFCGVILALYALAVVSRHFPDSR------------------------------------------------------MACGVAVAGVGVLTLTGLASPTKTLARRAAFAVAVAVPVGVWSALASMPGADAAIVSWSALGAAGTYSCALMVLLEAALPRPAAVLSRRGSGSRAGGGGPAVGRAR-----RVGSVVIELYVAVVAFMPAAGIAQASQGAGWKEIKGLQLLILGPVGRNLMGLAPPTGHNNDGSGGGTNAQGAARFALATAATGHAVIAVALKLLEERTGGAXXXXXXXXXXXXXXXXXFGRRRGVQGPA-----SISRAFGEARWIPSMGNASAIFSAVGAFFCCWRHLPGESARALTAIPCCALLLLLQEDGRLFRGDTGFGAAVPAGALSATWAGSAVFYIILK 392
BLAST of mRNA_M-pyrifera_M_contig6759.16312.1 vs. uniprot
Match: D8LKN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN1_ECTSI) HSP 1 Score: 269 bits (688), Expect = 2.860e-78 Identity = 141/245 (57.55%), Postives = 174/245 (71.02%), Query Frame = 1
Query: 1 VGIAGLSSFMLWFSWQTVWHLSFRFYLQMGPQPWQAVGGGGNGERTPSLSLQQVSVCCAALSLGVLAVPGLAAFGVQQAVIGVVFGLHAVILLLVEMTLIGAEERDPWQLKGLFPLPLAAATGFLGAWMAVRLMQDRGVNPLFLWLPGSVNVAKVLACVVAGLAPINQESSALSYLTTAFPLAAVVMATTAPFALFEQYPATATAASDTHPSVESRVGYGVGVGGGVAATGTPAGDWSGPMLPFE 735
VG+AG+SSF+LWFSWQTVWHLSF F L +GP+ W+ + + SLSLQQVS CCAALS GVL VPG+ AFGV+Q IGVVFGLHAV+L+L+E+ L+GAE RDPWQL GL+PLPL A TG LG WMA RL++D GV+PLFLW+PGS+ AK+LA +A L P + ES +SYL T P+ ++ MA APFALF + P T A V +R+G G VG G+A DWSGPM+P E
Sbjct: 318 VGVAGVSSFILWFSWQTVWHLSFSFALPLGPRHWEGGATSSSPPLSSSLSLQQVSACCAALSFGVLLVPGMVAFGVRQVAIGVVFGLHAVVLMLLEIVLVGAEARDPWQLDGLYPLPLVALTGVLGIWMAFRLVRDHGVDPLFLWVPGSIGAAKMLAYFLAVLVPTDGESPEMSYLFTVVPIVSLAMAAAAPFALFRRTPPTQAA-------VGTRLGSGEPVGSGIAE------DWSGPMVPLE 549
BLAST of mRNA_M-pyrifera_M_contig6759.16312.1 vs. uniprot
Match: D8LKN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN2_ECTSI) HSP 1 Score: 250 bits (638), Expect = 3.540e-73 Identity = 169/320 (52.81%), Postives = 202/320 (63.12%), Query Frame = 1
Query: 757 MAISLMMCSGPVIAPLLEAVFWGGRGGIGHGGGTVVGVPVHAVAFCGVVLGLYLLAVVSRHFPNSRTGRRSATALLLASMAALALQPALKDGSAVATDPSRGTGVGDSGGGGDYW---REYLGQICGVAMAGMGVLALTGVASPTKTLTTRAAYASAIGAPLGAWSALAAMPLADPAAVAWSALGAVGTYSCAMMILLEAAHPR-ASVLSRSAMRSGREGGGKA-GRKRGAPAVAAGSVLLELYVAVAAIMPVAAVAQGVQLLVFGPVGRRLMGFPSRGGVSAEGAARFALAT------------AATGHAVIAVALKFV 1665
MA +L +CS PVI+PLL + GGR + ++V P H++AFCGVVL LY LAVVSRHFP+SR RRS ALL+ SMA L LQP+ G G+ GG G W REY+ Q CGVA+AG+GVL LTG+ SPTKTL +AA+A A+G P+G WSALA+MP A A V+WSALGA GTYSCA+M+LLEAA PR A+VLSR S GGG A GR R GSV++ELYVAV A MP A +AQG+QLL+ GPVGR LMG G + G AATGHAVI VALK +
Sbjct: 1 MASALYICSRPVISPLLRELLSGGRH-VASASASLVDSPAHSLAFCGVVLALYALAVVSRHFPDSRVARRSGAALLVTSMALLVLQPSALSGVV----------EGEHGGVGRSWKSRREYVEQACGVAVAGVGVLTLTGLTSPTKTLARKAAFAVAVGVPVGIWSALASMPGAAAAIVSWSALGAAGTYSCALMVLLEAALPRPAAVLSRRGSGSRAGGGGPAVGRAR-----RVGSVVVELYVAVVAFMPAAGIAQGLQLLILGPVGRNLMGLAPPTGHNDGGXXXXXXXXXXXXXXXXXXXXAATGHAVITVALKLL 304
BLAST of mRNA_M-pyrifera_M_contig6759.16312.1 vs. uniprot
Match: D8LKN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN3_ECTSI) HSP 1 Score: 118 bits (295), Expect = 2.250e-26 Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 1
Query: 1816 MGNASACLAAAGAFLCCWAHLPGEGARALAAVPCCALLLLLQEDGRLLRG-AGYVAAVPLGALSGAWAGSAAYYVLLK 2046
MGNASA +A GAF CCW HLPGE ARALAA+PCCALLLLLQEDGR+LRG G+ AAVP GALS WAGSAA+Y+LLK
Sbjct: 1 MGNASAIFSAVGAFFCCWRHLPGESARALAAIPCCALLLLLQEDGRILRGDTGFGAAVPAGALSATWAGSAAFYILLK 78
BLAST of mRNA_M-pyrifera_M_contig6759.16312.1 vs. uniprot
Match: A0A6H5KUT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT8_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.270e-23 Identity = 56/86 (65.12%), Postives = 65/86 (75.58%), Query Frame = 1
Query: 1 VGIAGLSSFMLWFSWQTVWHLSFRFYLQMGPQPWQAVGGGGNGERTPSLSLQQVSVCCAALSLGVLAVPGLAAFGVQQAVIGVVFG 258
VG+AG+SSF LWFSWQTVWHLSF F L +GP+ W+ G + + SLSLQQVS CCAAL GVL VPG+ AFGV+Q IGVVFG
Sbjct: 141 VGVAGVSSFTLWFSWQTVWHLSFSFALPLGPRHWEG-GATSSPPLSSSLSLQQVSACCAALCFGVLLVPGMVAFGVRQVAIGVVFG 225 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6759.16312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig6759.16312.1 >prot_M-pyrifera_M_contig6759.16312.1 ID=prot_M-pyrifera_M_contig6759.16312.1|Name=mRNA_M-pyrifera_M_contig6759.16312.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=673bp MLWFSWQTVWHLSFRFYLQMGPQPWQAVGGGGNGERTPSLSLQQVSVCCAback to top mRNA from alignment at M-pyrifera_M_contig6759:1867..12819+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig6759.16312.1 ID=mRNA_M-pyrifera_M_contig6759.16312.1|Name=mRNA_M-pyrifera_M_contig6759.16312.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=10953bp|location=Sequence derived from alignment at M-pyrifera_M_contig6759:1867..12819+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig6759:1867..12819+ >mRNA_M-pyrifera_M_contig6759.16312.1 ID=mRNA_M-pyrifera_M_contig6759.16312.1|Name=mRNA_M-pyrifera_M_contig6759.16312.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=4038bp|location=Sequence derived from alignment at M-pyrifera_M_contig6759:1867..12819+ (Macrocystis pyrifera P11B4 male)back to top |