mRNA_M-pyrifera_M_contig67535.16303.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67535.16303.1
Unique NamemRNA_M-pyrifera_M_contig67535.16303.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67535.16303.1 vs. uniprot
Match: A0A6H5K3X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X8_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.360e-21
Identity = 116/224 (51.79%), Postives = 127/224 (56.70%), Query Frame = 1 
Query:  322 GEEAAAFPVVGQTGTRNVPGCGTFSSARGAGGKESGARSXXXXXXGIARSGSEKERSMGAGKGGGGFAAERGGGR-----GGY--DGGPVLVASGQGRSMYDVKGFLSSWVLAGGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSWVFRSESSTAGDGGVMCSXXXXXXXXXXXXSGDSGQAR-MLITGGKDNVLREWRVEHGQPRLMAEISG 969
            G E    PV+  TG  NVPGCG  SS  G                   R G     +  A +G   FA E GGG      G Y  DGGPVLVA GQG+SMY VKG +SSWVL G       XXXXXXXXXXXXXXXXXXXXXXXXXXXXX     SW  RSE + AGDGGVMCS               SGQ+   LITGGKD+VLREW +  G+PRL+A ISG
Sbjct:  139 GGEGTYMPVMTHTGMHNVPGCGIASSTGGR------------------RFGEGAPATTAAARGAP-FALEGGGGSLPMKDGDYVADGGPVLVACGQGKSMYKVKGCISSWVLVG-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSNQSWALRSEDNPAGDGGVMCSACVPSIA--------SGQSSGTLITGGKDSVLREWEIAEGRPRLVAHISG 328
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BLAST of mRNA_M-pyrifera_M_contig67535.16303.1 vs. uniprot
Match: D7G1I6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I6_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 9.230e-5
Identity = 47/109 (43.12%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:  340 FPVVGQTGTRNVPGCGTFSSARGAGGKESGARSXXXXXXGIARSGSEKERSMGAGKGG-----GGFAAERGGGRGGYDGGPVLVASGQGRSMYDVKGFLSSWVLAGGIG 651
             PV+  TGT+NVPGCGT SS    GG+  G  +    XX                 G      G + A         DGGPVLVA GQG+SMY+VKG +SSWVL GG G
Sbjct:    1 MPVMTHTGTKNVPGCGTASST---GGRRFGEGAPATTXXXXXXXXXXXXXXXXXXXGSLPMKDGDYVA---------DGGPVLVACGQGKSMYNVKGCMSSWVLVGGGG 97
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67535.16303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3X8_9PHAE3.360e-2151.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1I6_ECTSI9.230e-543.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67535contigM-pyrifera_M_contig67535:97..1068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue2e-10
Seed eggNOG ortholog2880.D7G1I6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size972
Cds size972
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816565.7102025-CDS-M-pyrifera_M_contig67535:96..10681622816565.7102025-CDS-M-pyrifera_M_contig67535:96..1068Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67535 97..1068 -
1692278050.1417956-CDS-M-pyrifera_M_contig67535:96..10681692278050.1417956-CDS-M-pyrifera_M_contig67535:96..1068Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67535 97..1068 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67535.16303.1prot_M-pyrifera_M_contig67535.16303.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67535 97..1068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67535.16303.1

>prot_M-pyrifera_M_contig67535.16303.1 ID=prot_M-pyrifera_M_contig67535.16303.1|Name=mRNA_M-pyrifera_M_contig67535.16303.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=324bp
DRGGGNDGGKDEDICVVVGQRVPDPSAVVVAATVVTSDRSSPLAVATARP
SSFTSTSTVAGTGTWNVPGSGAGGGGGGGGGISTSERGASGRWGSGTSWQ
GYGSTRGGEEAAAFPVVGQTGTRNVPGCGTFSSARGAGGKESGARSGGGG
EGGIARSGSEKERSMGAGKGGGGFAAERGGGRGGYDGGPVLVASGQGRSM
YDVKGFLSSWVLAGGIGGGGGNAVGGGGGENSLLGGGNDIIGGGGYIDEQ
ERGGTSWVFRSESSTAGDGGVMCSACVPAAAAAAAASGDSGQARMLITGG
KDNVLREWRVEHGQPRLMAEISG*
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mRNA from alignment at M-pyrifera_M_contig67535:97..1068-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67535.16303.1 ID=mRNA_M-pyrifera_M_contig67535.16303.1|Name=mRNA_M-pyrifera_M_contig67535.16303.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig67535:97..1068- (Macrocystis pyrifera P11B4 male)
GACCGGGGCGGCGGCAACGATGGTGGGAAAGACGAAGACATATGCGTCGT
CGTGGGACAGCGCGTCCCCGACCCCTCGGCGGTAGTCGTTGCCGCGACGG
TTGTCACATCAGACCGCTCATCCCCCCTCGCCGTCGCCACCGCGAGACCT
TCCTCCTTCACCTCTACCTCCACCGTCGCCGGGACTGGTACGTGGAACGT
TCCTGGCAGCGGCGCCGGTGGCGGTGGAGGGGGAGGGGGAGGGATTTCCA
CAAGCGAGAGAGGCGCGTCGGGAAGGTGGGGTTCGGGGACGAGCTGGCAA
GGTTACGGGTCGACGAGAGGCGGGGAGGAAGCTGCTGCTTTCCCTGTGGT
TGGCCAGACCGGCACGAGGAACGTTCCGGGATGCGGTACCTTCAGCAGCG
CCCGCGGAGCTGGAGGCAAGGAGAGTGGGGCCAGGAGCGGGGGGGGCGGG
GAGGGCGGTATCGCCCGCTCGGGATCGGAGAAGGAGAGGTCCATGGGGGC
GGGAAAGGGTGGGGGTGGGTTTGCTGCGGAAAGGGGTGGTGGCCGCGGTG
GTTATGACGGAGGGCCGGTGCTTGTAGCGAGCGGGCAGGGGCGATCGATG
TACGACGTGAAAGGCTTCTTATCGTCGTGGGTATTAGCTGGCGGCATTGG
CGGTGGTGGTGGTAATGCCGTCGGGGGCGGGGGCGGTGAAAATTCGCTGT
TGGGCGGTGGAAATGACATTATTGGGGGTGGCGGTTACATCGACGAACAG
GAACGCGGGGGAACTTCCTGGGTGTTTAGGTCCGAGAGCAGCACAGCCGG
CGACGGAGGAGTGATGTGCTCGGCGTGCGTGCCCGCCGCCGCTGCCGCCG
CTGCTGCGTCCGGCGACTCCGGACAGGCGCGCATGCTGATAACCGGCGGC
AAGGATAACGTGTTGAGGGAGTGGAGGGTGGAGCACGGGCAGCCCCGCTT
GATGGCCGAGATTTCAGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67535:97..1068-

>mRNA_M-pyrifera_M_contig67535.16303.1 ID=mRNA_M-pyrifera_M_contig67535.16303.1|Name=mRNA_M-pyrifera_M_contig67535.16303.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1944bp|location=Sequence derived from alignment at M-pyrifera_M_contig67535:97..1068- (Macrocystis pyrifera P11B4 male)
GACCGGGGCGGCGGCAACGATGGTGGGAAAGACGAAGACATATGCGTCGT
CGTGGGACAGCGCGTCCCCGACCCCTCGGCGGTAGTCGTTGCCGCGACGG
TTGTCACATCAGACCGCTCATCCCCCCTCGCCGTCGCCACCGCGAGACCT
TCCTCCTTCACCTCTACCTCCACCGTCGCCGGGACTGGTACGTGGAACGT
TCCTGGCAGCGGCGCCGGTGGCGGTGGAGGGGGAGGGGGAGGGATTTCCA
CAAGCGAGAGAGGCGCGTCGGGAAGGTGGGGTTCGGGGACGAGCTGGCAA
GGTTACGGGTCGACGAGAGGCGGGGAGGAAGCTGCTGCTTTCCCTGTGGT
TGGCCAGACCGGCACGAGGAACGTTCCGGGATGCGGTACCTTCAGCAGCG
CCCGCGGAGCTGGAGGCAAGGAGAGTGGGGCCAGGAGCGGGGGGGGCGGG
GAGGGCGGTATCGCCCGCTCGGGATCGGAGAAGGAGAGGTCCATGGGGGC
GGGAAAGGGTGGGGGTGGGTTTGCTGCGGAAAGGGGTGGTGGCCGCGGTG
GTTATGACGGAGGGCCGGTGCTTGTAGCGAGCGGGCAGGGGCGATCGATG
TACGACGTGAAAGGCTTCTTATCGTCGTGGGTATTAGCTGGCGGCATTGG
CGGTGGTGGTGGTAATGCCGTCGGGGGCGGGGGCGGTGAAAATTCGCTGT
TGGGCGGTGGAAATGACATTATTGGGGGTGGCGGTTACATCGACGAACAG
GAACGCGGGGGAACTTCCTGGGTGTTTAGGTCCGAGAGCAGCACAGCCGG
CGACGGAGGAGTGATGTGCTCGGCGTGCGTGCCCGCCGCCGCTGCCGCCG
CTGCTGCGTCCGGCGACTCCGGACAGGCGCGCATGCTGATAACCGGCGGC
AAGGATAACGTGTTGAGGGAGTGGAGGGTGGAGCACGGGCAGCCCCGCTT
GATGGCCGAGATTTCAGGGTGAGACCGGGGCGGCGGCAACGATGGTGGGA
AAGACGAAGACATATGCGTCGTCGTGGGACAGCGCGTCCCCGACCCCTCG
GCGGTAGTCGTTGCCGCGACGGTTGTCACATCAGACCGCTCATCCCCCCT
CGCCGTCGCCACCGCGAGACCTTCCTCCTTCACCTCTACCTCCACCGTCG
CCGGGACTGGTACGTGGAACGTTCCTGGCAGCGGCGCCGGTGGCGGTGGA
GGGGGAGGGGGAGGGATTTCCACAAGCGAGAGAGGCGCGTCGGGAAGGTG
GGGTTCGGGGACGAGCTGGCAAGGTTACGGGTCGACGAGAGGCGGGGAGG
AAGCTGCTGCTTTCCCTGTGGTTGGCCAGACCGGCACGAGGAACGTTCCG
GGATGCGGTACCTTCAGCAGCGCCCGCGGAGCTGGAGGCAAGGAGAGTGG
GGCCAGGAGCGGGGGGGGCGGGGAGGGCGGTATCGCCCGCTCGGGATCGG
AGAAGGAGAGGTCCATGGGGGCGGGAAAGGGTGGGGGTGGGTTTGCTGCG
GAAAGGGGTGGTGGCCGCGGTGGTTATGACGGAGGGCCGGTGCTTGTAGC
GAGCGGGCAGGGGCGATCGATGTACGACGTGAAAGGCTTCTTATCGTCGT
GGGTATTAGCTGGCGGCATTGGCGGTGGTGGTGGTAATGCCGTCGGGGGC
GGGGGCGGTGAAAATTCGCTGTTGGGCGGTGGAAATGACATTATTGGGGG
TGGCGGTTACATCGACGAACAGGAACGCGGGGGAACTTCCTGGGTGTTTA
GGTCCGAGAGCAGCACAGCCGGCGACGGAGGAGTGATGTGCTCGGCGTGC
GTGCCCGCCGCCGCTGCCGCCGCTGCTGCGTCCGGCGACTCCGGACAGGC
GCGCATGCTGATAACCGGCGGCAAGGATAACGTGTTGAGGGAGTGGAGGG
TGGAGCACGGGCAGCCCCGCTTGATGGCCGAGATTTCAGGGTGA
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