mRNA_M-pyrifera_M_contig6738.16280.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6738.16280.1
Unique NamemRNA_M-pyrifera_M_contig6738.16280.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6738.16280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6738contigM-pyrifera_M_contig6738:3907..4537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size632
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816564.0493913-CDS-M-pyrifera_M_contig6738:3906..42841622816564.0493913-CDS-M-pyrifera_M_contig6738:3906..4284Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6738 3907..4284 +
1692278049.0742197-CDS-M-pyrifera_M_contig6738:3906..42841692278049.0742197-CDS-M-pyrifera_M_contig6738:3906..4284Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6738 3907..4284 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816564.0603774-UTR-M-pyrifera_M_contig6738:4284..45371622816564.0603774-UTR-M-pyrifera_M_contig6738:4284..4537Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6738 4285..4537 +
1692278049.0840638-UTR-M-pyrifera_M_contig6738:4284..45371692278049.0840638-UTR-M-pyrifera_M_contig6738:4284..4537Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6738 4285..4537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6738.16280.1prot_M-pyrifera_M_contig6738.16280.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6738 3907..4284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6738.16280.1

>prot_M-pyrifera_M_contig6738.16280.1 ID=prot_M-pyrifera_M_contig6738.16280.1|Name=mRNA_M-pyrifera_M_contig6738.16280.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
SLPYCRAYTGIKPPHLGSAKVIPTQKHYYYGYRLFLAVLYLSGRGYSPRS
ILTSESKRVLFLPPERYEVTRKLTKQYQALQTELPSLSFSPIISSPPCPI
CRAYTEINRPHLGLMDDRFSHDLHL*
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mRNA from alignment at M-pyrifera_M_contig6738:3907..4537+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6738.16280.1 ID=mRNA_M-pyrifera_M_contig6738.16280.1|Name=mRNA_M-pyrifera_M_contig6738.16280.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=631bp|location=Sequence derived from alignment at M-pyrifera_M_contig6738:3907..4537+ (Macrocystis pyrifera P11B4 male)
TCCCTGCCCTATTGTCGCGCGTATACAGGAATAAAGCCTCCACACCTCGG
TAGTGCGAAGGTCATTCCAACACAGAAACACTATTACTACGGGTATCGCT
TGTTTTTGGCGGTACTGTACCTCTCTGGACGGGGATATAGTCCCCGTTCG
ATACTCACATCAGAGTCCAAACGGGTACTGTTTCTGCCGCCAGAGAGGTA
CGAAGTTACGCGAAAGCTGACGAAACAATACCAGGCACTACAAACCGAGT
TGCCGTCACTCTCGTTTAGTCCCATTATCTCCTCCCCTCCCTGCCCTATA
TGTCGCGCGTATACAGAAATAAACCGTCCACACCTCGGATTGATGGATGA
TCGATTCTCACATGATCTACATCTTTGAGAGCAGATAGATAGATCCCTGA
CCTTGTATGATCTAGCTCACGTTGCCCGGTGGGAGTCGTGCAATCTGCAC
AATCTACTATAATAATAGGACACGTGTCCGGTGTTGGATACGTGCTATAC
AGATCCTGCATAACATCTAAAAAAGGACAAGTTGGGATCTAGATGATCTC
TACCGTAGATTTAGATCTATCCGACGTGTGAAAGCTTCGGCGGTACTGTA
GGTGATGCGAAAACTCGCAGGCTATTACACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6738:3907..4537+

>mRNA_M-pyrifera_M_contig6738.16280.1 ID=mRNA_M-pyrifera_M_contig6738.16280.1|Name=mRNA_M-pyrifera_M_contig6738.16280.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig6738:3907..4537+ (Macrocystis pyrifera P11B4 male)
TCCCTGCCCTATTGTCGCGCGTATACAGGAATAAAGCCTCCACACCTCGG
TAGTGCGAAGGTCATTCCAACACAGAAACACTATTACTACGGGTATCGCT
TGTTTTTGGCGGTACTGTACCTCTCTGGACGGGGATATAGTCCCCGTTCG
ATACTCACATCAGAGTCCAAACGGGTACTGTTTCTGCCGCCAGAGAGGTA
CGAAGTTACGCGAAAGCTGACGAAACAATACCAGGCACTACAAACCGAGT
TGCCGTCACTCTCGTTTAGTCCCATTATCTCCTCCCCTCCCTGCCCTATA
TGTCGCGCGTATACAGAAATAAACCGTCCACACCTCGGATTGATGGATGA
TCGATTCTCACATGATCTACATCTTTGATCCCTGCCCTATTGTCGCGCGT
ATACAGGAATAAAGCCTCCACACCTCGGTAGTGCGAAGGTCATTCCAACA
CAGAAACACTATTACTACGGGTATCGCTTGTTTTTGGCGGTACTGTACCT
CTCTGGACGGGGATATAGTCCCCGTTCGATACTCACATCAGAGTCCAAAC
GGGTACTGTTTCTGCCGCCAGAGAGGTACGAAGTTACGCGAAAGCTGACG
AAACAATACCAGGCACTACAAACCGAGTTGCCGTCACTCTCGTTTAGTCC
CATTATCTCCTCCCCTCCCTGCCCTATATGTCGCGCGTATACAGAAATAA
ACCGTCCACACCTCGGATTGATGGATGATCGATTCTCACATGATCTACAT
CTTTGA
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