mRNA_M-pyrifera_M_contig67172.16251.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67172.16251.1
Unique NamemRNA_M-pyrifera_M_contig67172.16251.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67172.16251.1 vs. uniprot
Match: A0A6H5JPT0_9PHAE (Decapping nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT0_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.550e-44
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:   22 KVFKEGGVIYLEVVMVDRNKGKMDRTSYWGRRFETLCVLGVEGARLDELQRGPDDPPRPSYCALYRSRIGNHNVLMG-EGDAC 267
            KVFKEGGVIYLEVVM +RN+GK+DRTSYWGRRFETLCVLGVEGARLDELQRGP D PRPSYC LYRSR+G+HN+LMG E DAC
Sbjct:   79 KVFKEGGVIYLEVVMTNRNQGKLDRTSYWGRRFETLCVLGVEGARLDELQRGPGDLPRPSYCGLYRSRLGSHNLLMGAEIDAC 161
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BLAST of mRNA_M-pyrifera_M_contig67172.16251.1 vs. uniprot
Match: D8LT56_ECTSI (Decapping nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT56_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 4.250e-43
Identity = 70/84 (83.33%), Postives = 78/84 (92.86%), Query Frame = 1 
Query:   19 LKVFKEGGVIYLEVVMVDRNKGKMDRTSYWGRRFETLCVLGVEGARLDELQRGPDDPPRPSYCALYRSRIGNHNVLMG-EGDAC 267
            ++VFKEGGVIYLEVVM +RN+GK+DRTSYWGRRFETLCVLGVEGARLDELQRGP D PRPSYC LYRSR+G+HN+LMG E DAC
Sbjct:  202 MEVFKEGGVIYLEVVMTNRNQGKLDRTSYWGRRFETLCVLGVEGARLDELQRGPGDLPRPSYCGLYRSRLGSHNLLMGAEIDAC 285
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BLAST of mRNA_M-pyrifera_M_contig67172.16251.1 vs. uniprot
Match: UPI001CB947C1 (NAD-capped RNA hydrolase DXO1 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB947C1)

HSP 1 Score: 60.1 bits (144), Expect = 1.450e-8
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:   13 PW-LKVFKEGGVIYLEV-VMVDRNKGKMDRT-SYWGRRFETLCVLGVEGARLDELQRGPDDPPRPSYCALYRSRIGNHNVLMG-EGDAC 267
            PW + V K  GV+YL+V  + +R +G  DR  SYWG  FETL     E  R D+ +   D      YCA+ ++++G H +LMG E D C
Sbjct:  310 PWEMGVHKRKGVVYLDVHKLPERPRGDRDRLMSYWGYCFETLAT---EDPRRDDGEGIHDVDANVEYCAVIKTKLGAHRILMGAEMDCC 395
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BLAST of mRNA_M-pyrifera_M_contig67172.16251.1 vs. uniprot
Match: A0A251VAT4_HELAN (Decapping nuclease n=2 Tax=Heliantheae alliance TaxID=911341 RepID=A0A251VAT4_HELAN)

HSP 1 Score: 55.8 bits (133), Expect = 4.500e-7
Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:   13 PW-LKVFKEGGVIYLEV-VMVDRNKGKMDRT-SYWGRRFETLCVLGVEGARLDELQRGPDDPPRPSYCALYRSRIGNHNVLMG-EGDAC 267
            PW + V K  GV+YL+V  + +R + + DR  SYWG  FETL     E  R D+ +          YCA+ ++++G H +LMG E D C
Sbjct:  330 PWEMGVHKRKGVVYLDVHKLPERPRSERDRRMSYWGYCFETLAT---EDPRRDDGEGIHHVDANVEYCAVIKTKLGAHRILMGAEMDCC 415
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BLAST of mRNA_M-pyrifera_M_contig67172.16251.1 vs. uniprot
Match: UPI00125D723C (decapping nuclease DXO homolog, chloroplastic n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125D723C)

HSP 1 Score: 55.1 bits (131), Expect = 8.380e-7
Identity = 34/89 (38.20%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:   13 PW-LKVFKEGGVIYLEV-VMVDRNKGKMDRTS-YWGRRFETLCVLGVEGARLDELQRGPDDPPRPSYCALYRSRIGNHNVLMG-EGDAC 267
            PW + V K  GV+YL+V  + +R K ++DR   YWG  FE+L     E     +  R  D      YCA+ +++IG H +LMG E D C
Sbjct:  301 PWEMGVHKRKGVVYLDVHKLPERPKSELDRRRCYWGYCFESLAT---EDPGRSDGDRIHDIDANVEYCAVIKTKIGAHRILMGAEMDCC 386
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BLAST of mRNA_M-pyrifera_M_contig67172.16251.1 vs. uniprot
Match: UPI00053FCBA2 (decapping nuclease DXO homolog, chloroplastic n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FCBA2)

HSP 1 Score: 53.5 bits (127), Expect = 2.930e-6
Identity = 34/89 (38.20%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:   13 PW-LKVFKEGGVIYLEV-VMVDRNKGKMDRTS-YWGRRFETLCVLGVEGARLDELQRGPDDPPRPSYCALYRSRIGNHNVLMG-EGDAC 267
            PW + V K  GV+YL+V  + +R + +MDR   YWG  FETL     E  R D  +          YCA+ ++++G H +LMG E D C
Sbjct:  327 PWEMGVHKRKGVVYLDVHKLPERPQTEMDRRRCYWGYCFETLAT---EDPRRDGGEGIHHIDANVEYCAVIKTKLGAHRILMGAEMDCC 412
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BLAST of mRNA_M-pyrifera_M_contig67172.16251.1 vs. uniprot
Match: A0A0K9QDR8_SPIOL (Decapping nuclease n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QDR8_SPIOL)

HSP 1 Score: 53.5 bits (127), Expect = 2.940e-6
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:   13 PW-LKVFKEGGVIYLEV-VMVDRNKGKMDRTS-YWGRRFETLCVLGVEGARLDELQRGPDDPPRPSYCALYRSRIGNHNVLMG-EGDAC 267
            PW + V K  GV+YL+V  + +R + ++DR   YWG  FETL     E  R D+ +          YCA+ ++++G H +LMG E D C
Sbjct:  325 PWEMGVHKRKGVVYLDVHKLPERPQTEIDRRRCYWGYCFETLAT---EDPRRDDGEGIHHIDSNVEYCAVIKTKLGAHRILMGAEMDCC 410
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BLAST of mRNA_M-pyrifera_M_contig67172.16251.1 vs. uniprot
Match: A0A6I9SLE6_SESIN (Decapping nuclease n=2 Tax=Lamiales TaxID=4143 RepID=A0A6I9SLE6_SESIN)

HSP 1 Score: 52.4 bits (124), Expect = 7.460e-6
Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:   13 PW-LKVFKEGGVIYLEV-VMVDRNKGKMDRTS-YWGRRFETLCVLGVEGARLDELQRGPDDPPRPSYCALYRSRIGNHNVLMG-EGDAC 267
            PW + V K  GV+YL+V  + +R + ++DR   YWG  FETL     E  R  + +          YCA+ ++++G H +LMG E D C
Sbjct:  308 PWEMGVHKRNGVVYLDVHKLPERPQSELDRRRCYWGYCFETLAT---EDPRRADGEGIHHVDANVEYCAVIKTKLGAHRILMGAEMDCC 393
[Close]
BLAST of mRNA_M-pyrifera_M_contig67172.16251.1 vs. uniprot
Match: A0A2G3DC96_CAPCH (Decapping nuclease n=6 Tax=Capsicum TaxID=4071 RepID=A0A2G3DC96_CAPCH)

HSP 1 Score: 52.4 bits (124), Expect = 7.460e-6
Identity = 33/89 (37.08%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:   13 PW-LKVFKEGGVIYLEV-VMVDRNKGKMDRTS-YWGRRFETLCVLGVEGARLDELQRGPDDPPRPSYCALYRSRIGNHNVLMG-EGDAC 267
            PW + V K  GV+YL+V  + +R K  MDR   YWG  FE+L     E  R  + +          YCA+ ++++G H +LMG E D C
Sbjct:  309 PWEMGVHKRKGVVYLDVHKLPERPKSVMDRKRCYWGYCFESLAT---EDPRRSDGEGIHHVDANVEYCAVVKTKLGAHRILMGAEMDCC 394
[Close]
BLAST of mRNA_M-pyrifera_M_contig67172.16251.1 vs. uniprot
Match: A0A803LUB8_CHEQI (Decapping nuclease n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LUB8_CHEQI)

HSP 1 Score: 52.0 bits (123), Expect = 9.830e-6
Identity = 32/88 (36.36%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:   13 PW-LKVFKEGGVIYLEV-VMVDRNKGKMDRTS-YWGRRFETLCVLGVEGARLDELQRGPDDPPRPSYCALYRSRIGNHNVLMGEGDAC 267
            PW + V K  GVIYL+V  + +R K ++DR   YWG  FETL     E    D+ +          YCA+ ++++G H +LMG    C
Sbjct:  142 PWEMGVHKRKGVIYLDVHKLPERPKTELDRRMCYWGYCFETLAT---EDPTRDDGEGIHHIDANVEYCAVIKTKLGAHRILMGAEMDC 226
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67172.16251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JPT0_9PHAE1.550e-4485.54Decapping nuclease n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D8LT56_ECTSI4.250e-4383.33Decapping nuclease n=1 Tax=Ectocarpus siliculosus ... [more]
UPI001CB947C11.450e-840.45NAD-capped RNA hydrolase DXO1 n=1 Tax=Erigeron can... [more]
A0A251VAT4_HELAN4.500e-738.20Decapping nuclease n=2 Tax=Heliantheae alliance Ta... [more]
UPI00125D723C8.380e-738.20decapping nuclease DXO homolog, chloroplastic n=2 ... [more]
UPI00053FCBA22.930e-638.20decapping nuclease DXO homolog, chloroplastic n=1 ... [more]
A0A0K9QDR8_SPIOL2.940e-637.08Decapping nuclease n=2 Tax=Spinacia oleracea TaxID... [more]
A0A6I9SLE6_SESIN7.460e-635.96Decapping nuclease n=2 Tax=Lamiales TaxID=4143 Rep... [more]
A0A2G3DC96_CAPCH7.460e-637.08Decapping nuclease n=6 Tax=Capsicum TaxID=4071 Rep... [more]
A0A803LUB8_CHEQI9.830e-636.36Decapping nuclease n=1 Tax=Chenopodium quinoa TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67172contigM-pyrifera_M_contig67172:394..660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue2.4e-35
Seed eggNOG ortholog2880.D8LT56
Preferred nameRAI1
KEGG koko:K14845,ko:K18404
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000291,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006364,GO:0006366,GO:0006369,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016891,GO:0016893,GO:0017076,GO:0018130,GO:0019001,GO:0019003,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0030234,GO:0030846,GO:0031086,GO:0031087,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032774,GO:0032991,GO:0034353,GO:0034428,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0036094,GO:0042254,GO:0042273,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0043633,GO:0043634,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050790,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0071025,GO:0071027,GO:0071029,GO:0071035,GO:0071046,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090730,GO:0097159,GO:0097367,GO:0097659,GO:0098772,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902555,GO:1902911,GO:1905348,GO:1905354,GO:1990174,GO:1990234
EggNOG free text desc.decapping
EggNOG OGsKOG1982@1,KOG1982@2759
Ec32 ortholog descriptionRAI1-like
Ec32 orthologEc-08_004300.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03019,ko03021,ko03036
Exons1
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.2782264-CDS-M-pyrifera_M_contig67172:393..6601622816562.2782264-CDS-M-pyrifera_M_contig67172:393..660Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67172 394..660 -
1692278048.1274493-CDS-M-pyrifera_M_contig67172:393..6601692278048.1274493-CDS-M-pyrifera_M_contig67172:393..660Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67172 394..660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67172.16251.1prot_M-pyrifera_M_contig67172.16251.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67172 394..660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67172.16251.1

>prot_M-pyrifera_M_contig67172.16251.1 ID=prot_M-pyrifera_M_contig67172.16251.1|Name=mRNA_M-pyrifera_M_contig67172.16251.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MHALPWLKVFKEGGVIYLEVVMVDRNKGKMDRTSYWGRRFETLCVLGVEG
ARLDELQRGPDDPPRPSYCALYRSRIGNHNVLMGEGDAC
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mRNA from alignment at M-pyrifera_M_contig67172:394..660-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67172.16251.1 ID=mRNA_M-pyrifera_M_contig67172.16251.1|Name=mRNA_M-pyrifera_M_contig67172.16251.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig67172:394..660- (Macrocystis pyrifera P11B4 male)
ATGCACGCCCTGCCCTGGTTGAAGGTGTTCAAGGAAGGAGGCGTTATCTA
CCTGGAGGTGGTGATGGTGGACCGGAACAAGGGGAAGATGGACCGCACCA
GCTATTGGGGTCGGCGGTTCGAGACCCTGTGCGTGCTGGGTGTGGAAGGT
GCTCGCCTGGACGAGCTGCAGCGGGGGCCGGACGACCCGCCGAGGCCGAG
CTACTGCGCGCTGTACAGATCTAGGATTGGCAACCACAACGTCTTGATGG
GTGAGGGAGACGCGTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67172:394..660-

>mRNA_M-pyrifera_M_contig67172.16251.1 ID=mRNA_M-pyrifera_M_contig67172.16251.1|Name=mRNA_M-pyrifera_M_contig67172.16251.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig67172:394..660- (Macrocystis pyrifera P11B4 male)
ATGCACGCCCTGCCCTGGTTGAAGGTGTTCAAGGAAGGAGGCGTTATCTA
CCTGGAGGTGGTGATGGTGGACCGGAACAAGGGGAAGATGGACCGCACCA
GCTATTGGGGTCGGCGGTTCGAGACCCTGTGCGTGCTGGGTGTGGAAGGT
GCTCGCCTGGACGAGCTGCAGCGGGGGCCGGACGACCCGCCGAGGCCGAG
CTACTGCGCGCTGTACAGATCTAGGATTGGCAACCACAACGTCTTGATGG
GTGAGGGAGACGCGTGCATGCACGCCCTGCCCTGGTTGAAGGTGTTCAAG
GAAGGAGGCGTTATCTACCTGGAGGTGGTGATGGTGGACCGGAACAAGGG
GAAGATGGACCGCACCAGCTATTGGGGTCGGCGGTTCGAGACCCTGTGCG
TGCTGGGTGTGGAAGGTGCTCGCCTGGACGAGCTGCAGCGGGGGCCGGAC
GACCCGCCGAGGCCGAGCTACTGCGCGCTGTACAGATCTAGGATTGGCAA
CCACAACGTCTTGATGGGTGAGGGAGACGCGTGC
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