mRNA_M-pyrifera_M_contig67077.16232.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67077.16232.1
Unique NamemRNA_M-pyrifera_M_contig67077.16232.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67077.16232.1 vs. uniprot
Match: A0A096P8W2_OSTTA (Transmembrane receptor, eukaryota n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096P8W2_OSTTA)

HSP 1 Score: 58.5 bits (140), Expect = 3.890e-7
Identity = 46/142 (32.39%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:    1 YFVAALLLEVLFIQAAAGDDDANARTALFLLVTLLDGVFLFSIYYSLQHTRFALAQANQNVKKAM---FDRLYAVLAAFAILWLALALLLLLVRTQLIRDFPWKYDWVFEAFFQVLTWCVLATAAWLWKPGEATQRYSSYAE 417
            Y  +A + +V+    +  D    AR  L L +++ + VFL  I+ SL  T   LA   Q  K A+   F    A+ AA +++WLA  +      T +I D  W+  W+  AF+ VL++ +LA   +LWKP  A+ +Y+ Y+E
Sbjct:  349 YLCSAAVKDVVEHVGSVDDLRPGARLFLVLPISVFETVFLLWIFSSLSRTLTQLALRRQTQKLALYRAFTNALALSAALSVVWLAYEMWF--KSTDMI-DEKWESVWMLSAFWNVLSFGLLAVMCFLWKPSGASSQYA-YSE 486
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BLAST of mRNA_M-pyrifera_M_contig67077.16232.1 vs. uniprot
Match: A4S8K7_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S8K7_OSTLU)

HSP 1 Score: 53.9 bits (128), Expect = 1.550e-5
Identity = 47/148 (31.76%), Postives = 72/148 (48.65%), Query Frame = 1 
Query:    1 YFVAALLLEVLFIQAAAGDDDANARTALFLLVTLLDGVFLFSIYYSLQHTRFALAQANQNVKKAMFDRLYAVLAAFAIL---WLALALLLLLVRTQLIRDFPWKYDWVFEAFFQVLTWCVLATAAWLWKPG-EATQ-RYSSYAEGIGE 429
            Y  +  + +V+    +  D    AR  L L V++ D VFL  I+ SL  T   L    Q  K +++     +LAA  +L   WLA  +      T +I +  W+  W+  AF+Q L++ +LA   +LW+P  E+TQ  YS  A  I E
Sbjct:  343 YLFSTAVKDVVEHVGSVDDLKPGARLFLVLPVSVFDSVFLIWIFNSLSRTLTQLVLRQQKQKLSLYRAFTNLLAANVVLSVGWLAYEMWF--KSTDMIEE-KWESVWMLTAFWQALSFGLLAGICFLWRPASESTQYAYSELANDISE 487
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BLAST of mRNA_M-pyrifera_M_contig67077.16232.1 vs. uniprot
Match: A0A6I9S5K3_ELAGV (transmembrane protein 87A n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9S5K3_ELAGV)

HSP 1 Score: 51.6 bits (122), Expect = 9.620e-5
Identity = 43/143 (30.07%), Postives = 63/143 (44.06%), Query Frame = 1 
Query:    1 YFVAALLLEVLFIQAAAGDDDANARTALFLLVTLLDGVFLFSIYYSLQHTRFALAQANQNVKKAMFDRLYAVLAAFAILWLALALLLLLVRTQLIRDFPWKYDWVFEAFFQVLTWCVLATAAWLWKPGEATQRYSSYAEGIGE 429
            YFVA+  LE++       D    A   L L V LLD  F+  I+ SL  T   L       K  ++ +    LA F +L +A     L           W+  W+  AF+ VL++ +LA    LW P +   RY+ Y+E  G+
Sbjct:  329 YFVASEALELVEHLGNINDFAGKATLFLVLPVVLLDATFIVWIFSSLSKTLEKLQLRRSMAKLELYRKFTNSLAIFVLLSVAWIGYELYFNAMDPLSELWQRAWIIPAFWNVLSYALLAIICILWAPSQNPTRYA-YSEDTGD 470
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67077.16232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A096P8W2_OSTTA3.890e-732.39Transmembrane receptor, eukaryota n=2 Tax=Ostreoco... [more]
A4S8K7_OSTLU1.550e-531.76Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A6I9S5K3_ELAGV9.620e-530.07transmembrane protein 87A n=3 Tax=Arecaceae TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67077contigM-pyrifera_M_contig67077:820..1275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.9
Seed ortholog evalue7.3e-08
Seed eggNOG ortholog4155.Migut.I01101.1.p
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0012505,GO:0016020,GO:0031090,GO:0031984,GO:0031985,GO:0032580,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098791
EggNOG free text desc.Lung seven transmembrane receptor
EggNOG OGs37HZU@33090,3G99J@35493,44B4B@71274,KOG2568@1,KOG2568@2759
COG Functional cat.S
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816561.0283508-CDS-M-pyrifera_M_contig67077:819..12751622816561.0283508-CDS-M-pyrifera_M_contig67077:819..1275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67077 820..1275 -
1692278047.4143713-CDS-M-pyrifera_M_contig67077:819..12751692278047.4143713-CDS-M-pyrifera_M_contig67077:819..1275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67077 820..1275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67077.16232.1prot_M-pyrifera_M_contig67077.16232.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67077 820..1275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67077.16232.1

>prot_M-pyrifera_M_contig67077.16232.1 ID=prot_M-pyrifera_M_contig67077.16232.1|Name=mRNA_M-pyrifera_M_contig67077.16232.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
YFVAALLLEVLFIQAAAGDDDANARTALFLLVTLLDGVFLFSIYYSLQHT
RFALAQANQNVKKAMFDRLYAVLAAFAILWLALALLLLLVRTQLIRDFPW
KYDWVFEAFFQVLTWCVLATAAWLWKPGEATQRYSSYAEGIGEHDNDVTL
DI
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mRNA from alignment at M-pyrifera_M_contig67077:820..1275-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67077.16232.1 ID=mRNA_M-pyrifera_M_contig67077.16232.1|Name=mRNA_M-pyrifera_M_contig67077.16232.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig67077:820..1275- (Macrocystis pyrifera P11B4 male)
TACTTTGTCGCCGCTCTCCTCCTCGAAGTGCTCTTCATCCAAGCAGCTGC
AGGAGATGACGATGCCAATGCACGCACAGCGCTCTTTCTCCTCGTGACTC
TGCTCGATGGCGTGTTCCTCTTCTCCATCTACTACAGCCTCCAACACACG
CGGTTCGCGCTCGCACAGGCCAACCAGAACGTGAAGAAGGCCATGTTCGA
CCGGCTCTATGCCGTCTTGGCAGCCTTCGCCATTCTCTGGCTCGCCCTCG
CCCTCCTCCTCCTCCTCGTACGAACGCAGCTCATTCGAGACTTCCCCTGG
AAATACGACTGGGTCTTCGAAGCCTTCTTCCAAGTCCTCACCTGGTGTGT
CCTTGCCACAGCCGCCTGGCTCTGGAAACCCGGAGAAGCGACACAGCGGT
ACTCAAGCTACGCAGAGGGCATAGGGGAACACGACAACGACGTCACACTA
GACATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67077:820..1275-

>mRNA_M-pyrifera_M_contig67077.16232.1 ID=mRNA_M-pyrifera_M_contig67077.16232.1|Name=mRNA_M-pyrifera_M_contig67077.16232.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig67077:820..1275- (Macrocystis pyrifera P11B4 male)
TACTTTGTCGCCGCTCTCCTCCTCGAAGTGCTCTTCATCCAAGCAGCTGC
AGGAGATGACGATGCCAATGCACGCACAGCGCTCTTTCTCCTCGTGACTC
TGCTCGATGGCGTGTTCCTCTTCTCCATCTACTACAGCCTCCAACACACG
CGGTTCGCGCTCGCACAGGCCAACCAGAACGTGAAGAAGGCCATGTTCGA
CCGGCTCTATGCCGTCTTGGCAGCCTTCGCCATTCTCTGGCTCGCCCTCG
CCCTCCTCCTCCTCCTCGTACGAACGCAGCTCATTCGAGACTTCCCCTGG
AAATACGACTGGGTCTTCGAAGCCTTCTTCCAAGTCCTCACCTGGTGTGT
CCTTGCCACAGCCGCCTGGCTCTGGAAACCCGGAGAAGCGACACAGCGGT
ACTCAAGCTACGCAGAGGGCATAGGGGAACACGACAACGACGTCACACTA
GACATCTACTTTGTCGCCGCTCTCCTCCTCGAAGTGCTCTTCATCCAAGC
AGCTGCAGGAGATGACGATGCCAATGCACGCACAGCGCTCTTTCTCCTCG
TGACTCTGCTCGATGGCGTGTTCCTCTTCTCCATCTACTACAGCCTCCAA
CACACGCGGTTCGCGCTCGCACAGGCCAACCAGAACGTGAAGAAGGCCAT
GTTCGACCGGCTCTATGCCGTCTTGGCAGCCTTCGCCATTCTCTGGCTCG
CCCTCGCCCTCCTCCTCCTCCTCGTACGAACGCAGCTCATTCGAGACTTC
CCCTGGAAATACGACTGGGTCTTCGAAGCCTTCTTCCAAGTCCTCACCTG
GTGTGTCCTTGCCACAGCCGCCTGGCTCTGGAAACCCGGAGAAGCGACAC
AGCGGTACTCAAGCTACGCAGAGGGCATAGGGGAACACGACAACGACGTC
ACACTAGACATC
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